Clone Sequence Records
BO14303.3prime Sequence
867 bp (727 high quality bases) assembled on 2006-05-29
> BO14303.3prime
ATGGTCTAGAAAGCTTGCATCGGCAACAAAATCGTCCGATTTTATCTTCC
TTGTGCTGCAACAGTCAATCTTTTTACTCGGGTCCTGAAATATCACCTGA
GACCAGTGATCTTTGGAGCATTGTTGTAATTCCGAAAGGTAATCCTCGAA
GTGTTTGAAACGAATTTCCCGGGTATTGGGACAACCGACGCCGTGATAAT
AGCTGCACAAGCTATCGCATATCCAGTTTCGCTGTCCGGAATCACTTGCG
TATTCCTCACTCTGTGCGTCATTGCCCTCCAAGGCATCCTCGTACATGCG
CGACGTTATTCTCGATATGGATTCGTCGATCTTGTACTCCACCTCCGGGT
TGAAAATCAGCTTCATCACCAACGGGTGATCCTCCTCCCGTCGCGCATAT
AGTAGATACCACAATGGCATCAGGTTGAATCGAATACAGGACATTAAACG
ACGTACGTGCACTTTCCTCTTGTTCCAATCGTGACCCAGCCATCGAACAG
CTATAAAGAAAACCTCAATCTCGGTGTTCACACAGATTTGATCGGATTCG
AGCAAAAAAATCAGATGGGAGGTCGGCAGATCGAGGAAATCCCTGGTGGC
CACAAAGGTGAGCAGAAACTTGCGGATCCTAGTCAGCATCAAATTGCGAA
CTACATCCATGGCGGGATTGTCCTTCGACTCGACGTATAGGACACATGCC
GTATCCTCGTTGTAGTATTCCTCATCATCGAAATATTTCCAACAATGCGC
CGCCCGACCAGAGATCCTCAAATAAGTGGCGGCCACATAGACCTCCACAA
TGTGAGCCAGCTCCAGGGACGGGCTCATCGCTCAGCATCCATTTGTAAGA
AAGCATAAAGGCCTTCT
BO14303.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-PA | 1323 | CG12857-RA | 522..1320 | 817..19 | 3970 | 99.8 | Minus |
CG12857-PA | 1323 | CG12857-RA | 473..523 | 867..817 | 205 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-RA | 1584 | CG12857-RA | 519..1366 | 867..19 | 4175 | 99.5 | Minus |
CG12857-RB | 1571 | CG12857-RB | 519..1353 | 867..19 | 3970 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14758125..14758621 | 19..515 | 2485 | 100 | Plus |
2R | 25286936 | 2R | 14758673..14759027 | 512..867 | 1685 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:44:54 has no hits.
BO14303.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:47 Download gff for
BO14303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-PA | 473..1323 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:00 Download gff for
BO14303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-PA | 473..1323 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:44:18 Download gff for
BO14303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 519..1371 | 12..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:42 Download gff for
BO14303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 519..1371 | 12..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:42 Download gff for
BO14303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14758120..14758619 | 12..513 | 99 | <- | Plus |
2R | 14758675..14759027 | 514..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:44:18 Download gff for
BO14303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10645625..10646124 | 12..513 | 99 | <- | Plus |
arm_2R | 10646180..10646532 | 514..867 | 98 | | Plus |
BO14303.5prime Sequence
917 bp (824 high quality bases) assembled on 2006-05-29
> BO14303.5prime
GAAGTTATCAGTCGACATGGAGGAGCTAATGAGGCAGAACGGACAGAAAT
GCGAGAGGCAGGAACTCACCTGCAGCGTTTTATTTACCAATCCCAAGCTT
AGTGCCGAGAAGTTATCCTCCAATGATGAAATAAACTCCATTGCGAGATT
CGTATCGAAGGCGGAGGATCTCGAAATGCATAGAGTGTTCAGTAAGATAT
CAAAGAATGGTGTCGAGGAGACCACGTCTCTGAATCGCTCCCTCTTCGAG
TTCGGTCATAATTTCGAGGATGCCGATGGCTGGCTGAAACTGGAGCAGCC
TTGCAAGGATCGGCTGGCCACGGTGCTGCGCTACATGTTCGAGTCCCATC
TGAAGACCACTGTGCAGATAGAAATCAACAATATGTACTTCAATTGCCAC
TTCATCGTGCTGCAGGTGTACTCTCGCTTCTTTAGTGAACTGGAGATGAT
TCCGCTGCTGGTCACCCTGCCCGAGAAGATCGTGTCCCAGAAGGCCTTTA
TGCTCTCCTACAAATGGATGCTGAGCGATGAGCCCGTCCTGGAGCTGGCT
CACATTGTGGAGGTCTATGTGGCCGCCACTTATTTGAGGATCTCTGGTCT
GGCGGCGCATTGTTGGAAATATTTCGATGATGAGGAATACTACAACGAGG
ATACGGCATGTGTCCTATACGTCGAGTCGAAGGACAATCCCGCCATGGAT
GTAGTTCGCAATTTGATGCTGACTAGGATCCGCAAGTTTCTGCTCACCTT
TGTGGCCACCAGGGATTTCCTCGATCTGCCGACCTCCCATCTGATTTTTT
TGCTCGAATCCGATCAAATCTGTGTGAACACCGAGATTGAGGTTTTTCTT
ATAGCTGTTCAATGGCTGGGTCACGATTGGAACAAGAAGGAAGTGCACGT
ACGTCGTTTTATGTCCT
BO14303.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-PA | 1323 | CG12857-RA | 1..901 | 17..917 | 4355 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-RA | 1584 | CG12857-RA | 42..947 | 12..917 | 4425 | 99.2 | Plus |
CG12857-RB | 1571 | CG12857-RB | 42..934 | 12..917 | 4250 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14758673..14759425 | 843..91 | 3765 | 100 | Minus |
2R | 25286936 | 2R | 14759483..14759561 | 90..12 | 380 | 98.7 | Minus |
2R | 25286936 | 2R | 14758544..14758621 | 917..840 | 300 | 92.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:21 has no hits.
BO14303.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:48 Download gff for
BO14303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:02 Download gff for
BO14303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:12 Download gff for
BO14303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 39..947 | 7..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:50 Download gff for
BO14303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 39..947 | 7..917 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:50 Download gff for
BO14303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14758544..14758619 | 842..917 | 92 | <- | Minus |
2R | 14758675..14759425 | 91..841 | 100 | <- | Minus |
2R | 14759483..14759564 | 7..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:12 Download gff for
BO14303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10646049..10646124 | 842..917 | 92 | <- | Minus |
arm_2R | 10646180..10646930 | 91..841 | 100 | <- | Minus |
arm_2R | 10646988..10647069 | 7..90 | 95 | | Minus |
BO14303.complete Sequence
1354 bp assembled on 2006-10-11
GenBank Submission: FJ633081
> BO14303.complete
GAAGTTATCAGTCGACATGGAGGAGCTAATGAGGCAGAACGGACAGAAAT
GCGAGAGGCAGGAACTCACCTGCAGCGTTTTATTTACCAATCCCAAGCTT
AGTGCCGAGAAGTTATCCTCCAATGATGAAATAAACTCCATTGCGAGATT
CGTATCGAAGGCGGAGGATCTCGAAATGCATAGAGTGTTCAGTAAGATAT
CAAAGAATGGTGTCGAGGAGACCACGTCTCTGAATCGCTCCCTCTTCGAG
TTCGGTCATAATTTCGAGGATGCCGATGGCTGGCTGAAACTGGAGCAGCC
TTGCAAGGATCGGCTGGCCACGGTGCTGCGCTACATGTTCGAGTCCCATC
TGAAGACCACTGTGCAGATAGAAATCAACAATATGTACTTCAATTGCCAC
TTCATCGTGCTGCAGGTGTACTCTCGCTTCTTTAGTGAACTGGAGATGAT
TCCGCTGCTGGTCACCCTGCCCGAGAAGATCGTGTCCCAGAAGGCCTTTA
TGCTCTCCTACAAATGGATGCTGAGCGATGAGCCCGTCCTGGAGCTGGCT
CACATTGTGGAGGTCTATGTGGCCGCCACTTATTTGAGGATCTCTGGTCT
GGCGGCGCATTGTTGGAAATATTTCGATGATGAGGAATACTACAACGAGG
ATACGGCATGTGTCCTATACGTCGAGTCGAAGGACAATCCCGCCATGGAT
GTAGTTCGCAATTTGATGCTGACTAGGATCCGCAAGTTTCTGCTCACCTT
TGTGGCCACCAGGGATTTCCTCGATCTGCCGACCTCCCATCTGATTTTTT
TGCTCGAATCCGATCAAATCTGTGTGAACACCGAGATTGAGGTTTTCTTT
ATAGCTGTTCGATGGCTGGGTCACGATTGGAACAAGAGGAAAGTGCACGT
ACGTCGTTTAATGTCCTGTATTCGATTCAACCTGATGCCATTGTGGTATC
TACTATATGCGCGACGGGAGGAGGATCACCCGTTGGTGATGAAGCTGATT
TTCAACCCGGAGGTGGAGTACAAGATCGACGAATCCATATCGAGAATAAC
GTCGCGCATGTACGAGGATGCCTTGGAGGGCAATGACGCACAGAGTGAGG
AATACGCAAGTGATTCCGGACAGCGAAACTGGATATGCGATAGCTTGTGC
AGCTATTATCACGGCGTCGGTTGTCCCAATACCCGGGAAATTCGTTTCAA
ACACTTCGAGGATTACCTTTCGGAATTACAACAATGCTCCAAAGATCACT
GGTCTCAGGTGATATTTCAGGACCCGAGTAAAAAGATTGACTGTTGCAGC
ACAAGGAAGATAAAATCGGACGATTTTGTTGCCGATGCAAGCTTTCTAGA
CCAT
BO14303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-RA | 1323 | CG12857-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
CG12857-RB | 882 | CG12857-PB | 1..882 | 17..911 | 4245 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-RA | 1584 | CG12857-RA | 42..1366 | 12..1336 | 6610 | 99.9 | Plus |
CG12857-RB | 1571 | CG12857-RB | 42..1353 | 12..1336 | 6380 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14758673..14759425 | 843..91 | 3765 | 100 | Minus |
2R | 25286936 | 2R | 14758125..14758621 | 1336..840 | 2485 | 100 | Minus |
2R | 25286936 | 2R | 14759483..14759561 | 90..12 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:16:56 has no hits.
BO14303.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:35 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 1..1323 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:36 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 31..1363 | 7..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:47 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 47..1366 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:36 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 31..1363 | 7..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:27 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12857-RA | 47..1366 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:27 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14758123..14758619 | 842..1338 | 99 | <- | Minus |
2R | 14758675..14759425 | 91..841 | 100 | <- | Minus |
2R | 14759483..14759556 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:47 Download gff for
BO14303.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10645628..10646124 | 842..1338 | 99 | <- | Minus |
arm_2R | 10646180..10646930 | 91..841 | 100 | <- | Minus |
arm_2R | 10646988..10647061 | 17..90 | 100 | | Minus |
BO14303.pep Sequence
Translation from 16 to 1354
> BO14303.pep
MEELMRQNGQKCERQELTCSVLFTNPKLSAEKLSSNDEINSIARFVSKAE
DLEMHRVFSKISKNGVEETTSLNRSLFEFGHNFEDADGWLKLEQPCKDRL
ATVLRYMFESHLKTTVQIEINNMYFNCHFIVLQVYSRFFSELEMIPLLVT
LPEKIVSQKAFMLSYKWMLSDEPVLELAHIVEVYVAATYLRISGLAAHCW
KYFDDEEYYNEDTACVLYVESKDNPAMDVVRNLMLTRIRKFLLTFVATRD
FLDLPTSHLIFLLESDQICVNTEIEVFFIAVRWLGHDWNKRKVHVRRLMS
CIRFNLMPLWYLLYARREEDHPLVMKLIFNPEVEYKIDESISRITSRMYE
DALEGNDAQSEEYASDSGQRNWICDSLCSYYHGVGCPNTREIRFKHFEDY
LSELQQCSKDHWSQVIFQDPSKKIDCCSTRKIKSDDFVADASFLDH
BO14303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12857-PA | 440 | CG12857-PA | 1..440 | 1..440 | 2331 | 100 | Plus |
CG12857-PB | 293 | CG12857-PB | 1..277 | 1..277 | 1431 | 99.6 | Plus |
CG30357-PA | 451 | CG30357-PA | 81..443 | 70..431 | 491 | 33.7 | Plus |
CG9970-PA | 484 | CG9970-PA | 140..450 | 107..406 | 290 | 27.8 | Plus |
CG10801-PA | 558 | CG10801-PA | 207..515 | 116..424 | 272 | 24.1 | Plus |