Clone BO14308 Report

Search the DGRC for BO14308

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG5662-RA
Protein status:BO14308.pep: Imported from assembly
Sequenced Size:910

Clone Sequence Records

BO14308.5prime Sequence

695 bp (656 high quality bases) assembled on 2006-05-29

> BO14308.5prime
GAAGTTATCAGTCGACATGGAGTTGGAACAAAACTTGACCGCCGCCCTGA
TGCAGTCGTCGGCGGAGGAGGGCAAGTCGGAGGAGGCGTGGCCGGCGGAC
GCCCACCTGCATCAGCCGGCCGAGGCGAATCAGCTCCTGCTGCCGGAGCG
CTCCAGCTGCCTGGCGGTGAAGACGTTTTTGCGCATGTGCAACCTACCAT
TTACGGAGCACATCAGCGACAATGCAGAGTTTATGTCACCAGGTGGCCGG
TTGACCCACCTGCCGCTGCTCCGTTTGGGCCCTGTCAAGACTTTTGCGGA
ATTCGAGCCAATAGTGGCCCAAGTGGAGGCCGTGCAAGGCGGCAATTGCC
TGGACAGTTGGATGTCCGAGGATCAGCGCGATAACATCCGCTGTCTGGTT
AGCTATGTGGAGAATGTCTTCACCCTGGCGGAGATTCACATGAGTTTTGT
GGATGAGGTAAACTATCAACTTTACACGGCAACGCGCTGTGCAGCCGCTC
ATCCGTGGCCGTTGAGTACGATTCGCCGGTTTGCCAAGCAGAAGGACGCA
CAGAAGATACTGAAGGTCTACCGGTGGCAGGATTTGGACAACGACCAGGT
AATCCAGAAGGTGAGCATCTGTGCCGATGCGTTGATCGCTGAACTGGAGG
AGGACCAGGCGAAGAGCTATTTCGGCGGCTCACGACCTTTGCAAT

BO14308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-PA 879 CG5662-RA 1..673 17..689 3290 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-RB 1082 CG5662-RB 70..743 16..689 3325 99.6 Plus
CG5662-RA 992 CG5662-RA 70..743 16..689 3325 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15210455..15211128 16..689 3325 99.6 Plus
Blast to na_te.dros performed on 2015-02-09 08:23:57 has no hits.

BO14308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:57 Download gff for BO14308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5662-PA 1..677 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:15 Download gff for BO14308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5662-PA 1..677 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:09:59 Download gff for BO14308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 58..735 16..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:24 Download gff for BO14308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 70..747 16..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:24 Download gff for BO14308.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15210455..15211132 16..695 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:09:59 Download gff for BO14308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15104488..15105165 16..695 99   Plus

BO14308.complete Sequence

910 bp assembled on 2009-10-23

GenBank Submission: KX794980

> BO14308.complete
GAAGTTATCAGTCGACATGGAGTTGGAACAAAACTTGACCGCCGCCCTGA
TGCAGTCGTCGGCGGAGGAGGGCAAGTCGGAGGAGGCGTGGCCGGCGGAC
GCCCACCTGCATCAGCCGGCCGAGGCGAATCAGCTCCTGCTGCCGGAGCG
CTCCAGCTGCCTGGCGGTGAAGACGTTTTTGCGCATGTGCAACCTACCAT
TTACGGAGCACATCAGCGACAATGCAGAGTTTATGTCACCAGGTGGCCGG
TTGACCCACCTGCCGCTGCTCCGTTTGGGCCCTGTCAAGACTTTTGCGGA
ATTCGAGCCAATAGTGGCCCAAGTGGAGGCCGTGCAAGGCGGCAATTGCC
TGGACAGTTGGATGTCCGAGGATCAGCGCGATAACATCCGCTGTCTGGTT
AGCTATGTGGAGAATGTCTTCACCCTGGCGGAGATTCACATGAGTTTTGT
GGATGAGGTAAACTATCAACTTTACACGGCAACGCGCTGTGCAGCCGCTC
ATCCGTGGCCGTTGAGTACGATTCGCCGGTTTGCCAAGCAGAAGGACGCA
CAGAAGATACTGAAGGTCTACCGGTGGCAGGATTTGGACAACGACCAGGT
AATCCAGGAGGTGAGCATCTGTGCCGATGCGTTGATCGCTGAACTGGAGG
AGGACCAGGCGAAGAGCTATTTCGGCGGCTCACGACCTTGCAAATTGGAC
GCCCTGGTCTTTGGCCATGTGGTAGCCATAATGACCACCAAGCTTCCCAA
CATGGAACTGGCCGCGGTTCTGGCCACATATCCACGTCTATTGGCCCACT
GTCGCCGCATCGATCAGAGCCTGTTTGATGGCAAACTCCTGACCAGCGCG
GTGGAGGAGCAGGAGGACGAGATGGAGTTGGAAAAAATAGAAGCAAGCTT
TCTAGACCAT

BO14308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-RB 879 CG5662-PB 1..876 17..892 4350 99.8 Plus
CG5662-RA 879 CG5662-PA 1..876 17..892 4350 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-RB 1082 CG5662-RB 70..946 16..892 4355 99.8 Plus
CG5662-RA 992 CG5662-RA 70..946 16..892 4355 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15210455..15211331 16..892 4355 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 01:02:47 has no hits.

BO14308.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-23 10:13:26 Download gff for BO14308.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 59..923 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:09 Download gff for BO14308.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 59..923 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:01 Download gff for BO14308.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 59..939 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:05 Download gff for BO14308.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 71..935 17..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:05 Download gff for BO14308.complete
Subject Subject Range Query Range Percent Splice Strand
X 15210456..15211320 17..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:09 Download gff for BO14308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15104489..15105353 17..881 99   Plus

BO14308.pep Sequence

Translation from 16 to 910

> BO14308.pep
MELEQNLTAALMQSSAEEGKSEEAWPADAHLHQPAEANQLLLPERSSCLA
VKTFLRMCNLPFTEHISDNAEFMSPGGRLTHLPLLRLGPVKTFAEFEPIV
AQVEAVQGGNCLDSWMSEDQRDNIRCLVSYVENVFTLAEIHMSFVDEVNY
QLYTATRCAAAHPWPLSTIRRFAKQKDAQKILKVYRWQDLDNDQVIQEVS
ICADALIAELEEDQAKSYFGGSRPCKLDALVFGHVVAIMTTKLPNMELAA
VLATYPRLLAHCRRIDQSLFDGKLLTSAVEEQEDEMELEKIEASFLDH

BO14308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-PB 292 CG5662-PB 1..292 1..292 1512 100 Plus
CG5662-PA 292 CG5662-PA 1..292 1..292 1512 100 Plus
CG8004-PA 269 CG8004-PA 6..267 11..275 622 46.8 Plus