Clone Sequence Records
BO14311.3prime Sequence
713 bp (697 high quality bases) assembled on 2006-05-29
> BO14311.3prime
ATGGTCTAGAAAGCTTGCAGTCCGGGCCTTATCAGCATTGGTTCCCGTGG
CAAGTGGTCCTTGGGGTTTTGCCAACATATCTAATGTTTCGAATTCATCC
TCCTCTTCGGACTCCAAGTGGGCATCGAAAAGGGCACAGAAGTCCCTTAT
GTAGTTCCTAAGACTTGCAATTCGCGACTGCAATTGCACAAAGATGCGTT
CATCGAAGACTTTCACCTTGATTCTATCGCCAGTATCTTTAGTTATCGAA
GCCAGATCGTATAGGTCCCTTCGCTCGTCCAGATTCTTGCTACACAGGCG
GCTGAGGTGCGTTACAAAGTCCTCCATGTCCTCTATAAGTTCCACTACTA
AAAAATAGTTTTTGGTCTTATTTCGAGCAGTTATAGGCTTTGCAACGGAA
TAGGCATAATCGAACTTTTCACCAATGGCCTTAAGATCACCCGGTAGTCC
CTTTAAAGCATTCTGAGTGCAGACTAAAAGACCATTCATATCTGTGAAGG
CTCTCCAGTCTGCTGATAATAGCTCATAATCTGGCCACCAGTCTTCATTT
TCATCTTGAAACTCATCTCGAGTGGAAGCTATCATGCGAGTCTTTAGTAT
CTGAAGTAGTTGTCCCAGTCGTGGTTTCATCAGCTCTATGATCAGGTTTC
GTAACTCTTCAATCTCTTTGCTTCCTTTTGAATCTTTGGGAGCTTCCTTT
CATAGTTTATTTA
BO14311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-PA | 717 | CG17744-RA | 20..714 | 713..19 | 3400 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 66..760 | 713..19 | 3430 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025967..7026431 | 19..483 | 2325 | 100 | Plus |
| 3L | 28110227 | 3L | 7026499..7026729 | 483..713 | 1110 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:11:33 has no hits.
BO14311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:23:59 Download gff for
BO14311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-PA | 21..717 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:17 Download gff for
BO14311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-PA | 21..717 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:09 Download gff for
BO14311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 67..765 | 13..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:10 Download gff for
BO14311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 67..765 | 13..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:10 Download gff for
BO14311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7025962..7026431 | 13..483 | 99 | <- | Plus |
| 3L | 7026500..7026728 | 484..712 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:09 Download gff for
BO14311.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019062..7019531 | 13..483 | 99 | <- | Plus |
| arm_3L | 7019600..7019828 | 484..712 | 98 | | Plus |
BO14311.5prime Sequence
746 bp (717 high quality bases) assembled on 2006-05-29
> BO14311.5prime
GAAGTTATCAGTCGACATGGAGTCTGCTAAAGTCCTAAATAAACTATTGA
AGGAAGCTCCCAAAGATTCAAAAGGAAGCAAAGAGATTGAAGAGTTACGA
AACCTGATCATAGAGCTGATGAAACCACGACTGGGACAACTACTTCAGAT
ACTAAAGACTCGCATGATAGCTTCCACTCGAGATGAGTTTCAAGATGAAA
ATGAAGACTGGTGGCCAGATTATGAGCTATTATCAGCAGACTGGAGAGCC
TTCACAGATATGAATGGTCTTTTAGTCTGCACTCAGAATGCTTTAAAGGG
ACTACCGGGTGATCTTAAGGCCATTGGTGAAAAGTTCGATTATGCCTATT
CCGTTGCAAAGCCTATAACTGCTCGAAATAAGACCAAAAACTATTTTTTA
GTAGTGGAACTTATAGAGGACATGGAGGACTTTGTAACGCACCTCAGCCG
CCTGTGTAGCAAGAATCTGGACGAGCGAAGGGACCTATACGATCTGGCTT
CGATAACTAAAGATACTGGCGATAGAATCAAGGTGAAAGTCTTCGATGAA
CGCATCTTTGTGCAATTGCAGTCGCGAATTGCAAGTCTTAGGAACTACAT
AAGGGACTTCTGTGCCCTTTTCGATGCCCACTTGGAGTCCGAAGAGGAGG
ATGAATTCGAAACATTAGATATGTTGGCAAAACCCCAAGGACCACTTGCC
ACGGGAACCAATGCTGATAAGGCCCGGACTGCAAGCTTTCTAGACC
BO14311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-PA | 717 | CG17744-RA | 1..714 | 17..730 | 3545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 46..760 | 16..730 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025967..7026431 | 730..266 | 2325 | 100 | Minus |
| 3L | 28110227 | 3L | 7026499..7026749 | 266..16 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:03:30 has no hits.
BO14311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:00 Download gff for
BO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-PA | 1..717 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:19 Download gff for
BO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-PA | 1..717 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:17 Download gff for
BO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 41..765 | 12..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:26 Download gff for
BO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 41..765 | 12..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:26 Download gff for
BO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7025962..7026431 | 266..736 | 99 | <- | Minus |
| 3L | 7026500..7026754 | 12..265 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:17 Download gff for
BO14311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019062..7019531 | 266..736 | 99 | <- | Minus |
| arm_3L | 7019600..7019854 | 12..265 | 98 | | Minus |
BO14311.complete Sequence
748 bp assembled on 2006-10-11
GenBank Submission: FJ633082
> BO14311.complete
GAAGTTATCAGTCGACATGGAGTCTGCTAAAGTCCTAAATAAACTATTGA
AGGAAGCTCCCAAAGATTCAAAAGGAAGCAAAGAGATTGAAGAGTTACGA
AACCTGATCATAGAGCTGATGAAACCACGACTGGGACAACTACTTCAGAT
ACTAAAGACTCGCATGATAGCTTCCACTCGAGATGAGTTTCAAGATGAAA
ATGAAGACTGGTGGCCAGATTATGAGCTATTATCAGCAGACTGGAGAGCC
TTCACAGATATGAATGGTCTTTTAGTCTGCACTCAGAATGCTTTAAAGGG
ACTACCGGGTGATCTTAAGGCCATTGGTGAAAAGTTCGATTATGCCTATT
CCGTTGCAAAGCCTATAACTGCTCGAAATAAGACCAAAAACTATTTTTTA
GTAGTGGAACTTATAGAGGACATGGAGGACTTTGTAACGCACCTCAGCCG
CCTGTGTAGCAAGAATCTGGACGAGCGAAGGGACCTATACGATCTGGCTT
CGATAACTAAAGATACTGGCGATAGAATCAAGGTGAAAGTCTTCGATGAA
CGCATCTTTGTGCAATTGCAGTCGCGAATTGCAAGTCTTAGGAACTACAT
AAGGGACTTCTGTGCCCTTTTCGATGCCCACTTGGAGTCCGAAGAGGAGG
ATGAATTCGAAACATTAGATATGTTGGCAAAACCCCAAGGACCACTTGCC
ACGGGAACCAATGCTGATAAGGCCCGGACTGCAAGCTTTCTAGACCAT
BO14311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 717 | CG17744-PA | 1..714 | 17..730 | 3555 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 46..760 | 16..730 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025967..7026431 | 730..266 | 2325 | 100 | Minus |
| 3L | 28110227 | 3L | 7026499..7026749 | 266..16 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:53 has no hits.
BO14311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:45 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 1..717 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:37 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 28..752 | 12..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:46:42 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 47..760 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:46 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 28..752 | 12..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:53 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 47..760 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:53 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7026500..7026748 | 17..265 | 99 | | Minus |
| 3L | 7025965..7026431 | 266..732 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:46:42 Download gff for
BO14311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019065..7019531 | 266..732 | 99 | <- | Minus |
| arm_3L | 7019600..7019848 | 17..265 | 99 | | Minus |
BO14311.pep Sequence
Translation from 16 to 748
> BO14311.pep
MESAKVLNKLLKEAPKDSKGSKEIEELRNLIIELMKPRLGQLLQILKTRM
IASTRDEFQDENEDWWPDYELLSADWRAFTDMNGLLVCTQNALKGLPGDL
KAIGEKFDYAYSVAKPITARNKTKNYFLVVELIEDMEDFVTHLSRLCSKN
LDERRDLYDLASITKDTGDRIKVKVFDERIFVQLQSRIASLRNYIRDFCA
LFDAHLESEEEDEFETLDMLAKPQGPLATGTNADKARTASFLDH
BO14311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-PA | 238 | CG17744-PA | 1..238 | 1..238 | 1220 | 100 | Plus |
