Clone Sequence Records
BO14312.3prime Sequence
711 bp (618 high quality bases) assembled on 2006-05-29
> BO14312.3prime
ATGGTCTAGAAAGCTTGCAATGGGATACAACCATTCGGAGAGATGACTTG
GAACAGTAGGCTTTCTATTCTTGCCATCGATTTGATCCTGTTCCTCATCA
CTGCTGCACTGGCTGCAATCGCTAACACTATTTGCCCGCGGCAGATCTTG
AGCGATTTGAGCCAAATTCGATTGCTCAGCATTACTCAAAGCAGCTCGGT
GTAAGGATGCGGCTCTCATCCTTCGAGCATGAAGTCGGGCATGAGCTCGA
GCTATGCCATCTGCCCGCATGCGATTACGGCGTCTTTGAACTTCTTCGGG
CGAGGGGCGAGAATTTTCTAGATCCTCCATGAATTCCGTGATCAGTCGAG
TCATTTCCTGTCTCTCGCTAGGGGAGAGGGGACCCATAGGTTCGATAAGA
GTGAAGTTCTCTGGCTGGAATCGGCCATAAGGACGGTTGATCACTTCCGG
ATCGGAGCTCAATCGTCTCCTTATTACTTGCCATATTGGTAATGGAGGTG
ATTGTGATGCTGATGGTGTGGACGTAATGGTGGCATGGGGTATCAAGTTG
GTGGTACCTTGCACAGGTCGCAAGCCGAAAAGTCCGGTATCGAGATCATG
GTTGGATACTTCGGAATCCTGAAGATTGACTGCCATCCACCCGTGGTGGT
TGAAAAACATAACGATAACCAATCCGTAATCCGTATCTGAATTCCAAGTA
CTTCCCAGAAT
BO14312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-PA | 801 | CG13471-RA | 202..798 | 615..19 | 2935 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 929 | CG13471-RA | 177..866 | 711..19 | 3225 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14732652..14733341 | 19..711 | 3150 | 98 | Plus |
Blast to na_te.dros performed on 2015-01-30 19:10:06 has no hits.
BO14312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:01 Download gff for
BO14312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-PA | 109..801 | 15..711 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:20 Download gff for
BO14312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-PA | 109..801 | 15..711 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:06:20 Download gff for
BO14312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 177..872 | 12..711 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:18:26 Download gff for
BO14312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 177..872 | 12..711 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:18:26 Download gff for
BO14312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14732646..14733341 | 12..711 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:06:20 Download gff for
BO14312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14725746..14726441 | 12..711 | 97 | | Plus |
BO14312.5prime Sequence
737 bp (736 high quality bases) assembled on 2006-05-29
> BO14312.5prime
GAAGTTATCAGTCGACATGTCATCATCCGAAACCGAATGGTTTGCAGAGG
TAGAGTTGGACAGTGAGGAGTCTGAGGAAGAACGCACTCTATCGTTCGCT
TCGGGTGACCTAAATGCCAATGAAATTCTGGGAAGTACATCGGATTCAGA
TACGGATACGGATTCGTTATCGCTATCGTTATCAACCACCACGGTGGATG
GCAGTCAATCATCAGGATCCGAAGTATCCAACCATGATCTCGATACCGGA
CTTTTCGGCTTGCGACCTGTGCAAGGTACCACCAACTTGATACCCCATGC
CACCATTACGTCCACACCATCAGCATCACAATCACCTCCATTACCAATAT
GGCAAGTAATAAGGAGACGATTGAGCTCCGATCCGGAAGTGATCAACCGT
CCTTATGGCCGATTCCAGCCAGAGAACTTCACTCTTATCGAACCTATGGG
TCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGAAT
TCATGGAGGATCTAGAAAATTCTCGCCCCTCGCCCGAAGAAGTTCAAAGA
CGCCGTAATCGCATGCGGGCAGATGGCATAGCTCGAGCTCATGCCCGACT
TCATGCTCGAAGGATGAGAGCCGCATCCTTACACCGAGCTGCTTTGAGTA
ATGCTGAGCAATCGAATTTGGCTCAAATCGCTCAAGATCTGCCGCGGGCA
AATAGTGTTAGCGATTGCAGCCAGTGCAGCAGTGATG
BO14312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-PA | 801 | CG13471-RA | 1..721 | 17..737 | 3555 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 929 | CG13471-RA | 69..789 | 17..737 | 3575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14732729..14733449 | 737..17 | 3575 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:43:28 has no hits.
BO14312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:03 Download gff for
BO14312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-PA | 1..721 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:21 Download gff for
BO14312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-PA | 1..721 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:04:29 Download gff for
BO14312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..789 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:28 Download gff for
BO14312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..789 | 17..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:28 Download gff for
BO14312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14732729..14733449 | 17..737 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:04:29 Download gff for
BO14312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14725829..14726549 | 17..737 | 99 | | Minus |
BO14312.complete Sequence
832 bp assembled on 2006-10-11
GenBank Submission: FJ633083
> BO14312.complete
GAAGTTATCAGTCGACATGTCATCATCCGAAACCGAATGGTTTGCAGAGG
TAGAGTTGGACAGTGAGGAGTCTGAGGAAGAACGCACTCTATCGTTCGCT
TCGGGTGACCTAAATGCCAATGAAATTCTGGGAAGTACATCGGATTCAGA
TACGGATACGGATTCGTTATCGCTATCGTTATCAACCACCACGGTGGATG
GCAGTCAATCATCAGGATCCGAAGTATCCAACCATGATCTCGATACCGGA
CTTTTCGGCTTGCGACCTGTGCAAGGTACCACCAACTTGATACCCCATGC
CACCATTACGTCCACACCATCAGCATCACAATCACCTCCATTACCAATAT
GGCAAGTAATAAGGAGACGATTGAGCTCCGATCCGGAAGTGATCAACCGT
CCTTATGGCCGATTCCAGCCAGAGAACTTCACTCTTATCGAACCTATGGG
TCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGAAT
TCATGGAGGATCTAGAAAATTCTCGCCCCTCGCCCGAAGAAGTTCAAAGA
CGCCGTAATCGCATGCGGGCAGATGGCATAGCTCGAGCTCATGCCCGACT
TCATGCTCGAAGGATGAGAGCCGCATCCTTACACCGAGCTGCTTTGAGTA
ATGCTGAGCAATCGAATTTGGCTCAAATCGCTCAAGATCTGCCGCGGGCA
AATAGTGTTAGCGATTGCAGCCAGTGCAGCAGTGATGAGGAACAGGATCA
AATCGATGGCAAGAATAGAAAGCCTACTGTTCCAAGTCATCTCTCCGAAT
GGTTGTATCCCATTGCAAGCTTTCTAGACCAT
BO14312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 801 | CG13471-PA | 1..798 | 17..814 | 3960 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-RA | 929 | CG13471-RA | 69..866 | 17..814 | 3960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14732652..14733449 | 814..17 | 3960 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:18:02 has no hits.
BO14312.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:49 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:39 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..872 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:11 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..866 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:50 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..872 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:55 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13471-RA | 69..866 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:55 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14732650..14733449 | 17..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:11 Download gff for
BO14312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14725750..14726549 | 17..816 | 99 | | Minus |
BO14312.pep Sequence
Translation from 16 to 832
> BO14312.pep
MSSSETEWFAEVELDSEESEEERTLSFASGDLNANEILGSTSDSDTDTDS
LSLSLSTTTVDGSQSSGSEVSNHDLDTGLFGLRPVQGTTNLIPHATITST
PSASQSPPLPIWQVIRRRLSSDPEVINRPYGRFQPENFTLIEPMGPLSPS
ERQEMTRLITEFMEDLENSRPSPEEVQRRRNRMRADGIARAHARLHARRM
RAASLHRAALSNAEQSNLAQIAQDLPRANSVSDCSQCSSDEEQDQIDGKN
RKPTVPSHLSEWLYPIASFLDH
BO14312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13471-PA | 266 | CG13471-PA | 1..266 | 1..266 | 1358 | 100 | Plus |
