Clone Sequence Records
BO14315.3prime Sequence
759 bp (685 high quality bases) assembled on 2006-05-29
> BO14315.3prime
ATGGTCTAGAAAGCTTGCAGCCAAATCGGAGGCGTAGGGCACGTTCGCCA
GGTGCCCGATGGCGCCGACGGCCAGCTTGGAGCTGCCCACCTTCTTGGCC
GCCTCCTGGACCTGCGACTGCGAGATGCCATCGATTGCGCCAAGCAGGGC
GTCCGCCTCCAGCACGTTCCGGGTGAGCGCCGCCTGGCGACCGATCTCCT
TAATTAGACCACCGTCCGACGAGTAGCGCGAGATGATGCGCGCCTTCAGA
AGAGCCTTGCCTCTGGCCACATCCTTATCAGACACCGAAGCCGACTTCAG
GCCGCGCACCAGGAACTCCACGGTCTTGCCAATGTCCTTGGAGTCGGCGG
AGACCACAAAACCGAACAGACCAGCGTCCGAGTAGCTGGCATTCACAGCC
TTGACAGAGGCTCCGACGCCGCCGGCGCAGTTGACGGCCTCGCCAAAGAG
TCCAGCAGAAGTGCCGCGCTTGGTGGCGGCCTTGGCGCCGAGCGCCTGCT
CCAGGATGGCGAATGCCAGCGCTTCCTTGTGGTTCGATGCGGCGGCGCCC
TGTCCAGCAACGGCGACGACCGCACGGTGACCAGAAGTGTCCTTGCGCGC
ATCTCCACCATACCAGTTGGCGGAGGCAGCCTTGCTGCCGCCGCTGGGGA
ACTGCAGGGTCTGGGCGAAGCCGGCCAGCGTGTTGTTGTCGATTCCCACG
CCCACGACAGCGGCACGGCCAGCTGCGAAGGTCTGGGCCACGTAGTGCAG
CAGGCTCTC
BO14315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-PA | 1323 | CG4169-RA | 580..1320 | 759..19 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1537 | CG4169-RB | 707..1447 | 759..19 | 3705 | 100 | Minus |
CG4169-RA | 1686 | CG4169-RA | 856..1596 | 759..19 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16585281..16586021 | 759..19 | 3705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:03:24 has no hits.
BO14315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:08 Download gff for
BO14315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-PA | 580..1323 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:28 Download gff for
BO14315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-PA | 580..1323 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:22 Download gff for
BO14315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 856..1606 | 7..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:30 Download gff for
BO14315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 856..1606 | 7..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:30 Download gff for
BO14315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16585281..16586031 | 7..759 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:22 Download gff for
BO14315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16578381..16579131 | 7..759 | 99 | | Minus |
BO14315.5prime Sequence
862 bp (825 high quality bases) assembled on 2006-05-29
> BO14315.5prime
GAAGTTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGC
GCGCCATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGAC
CTGTCCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCAC
CGCCGATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCG
GATCACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGT
TTGGCCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCG
CAACATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGC
TCGTCGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTG
CGCTATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGT
CGACAATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGG
AACGCGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGC
AACTCGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAG
CCTGCTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCG
TGGGCGTGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTG
CAGTTCCCCAGCGGCGGCAGCAAGGCTGCCTCCGCCAACTGGTATGGTGG
AGATGCGCGCAAGGACACTTCTGGTCACCGTGCGGTCGTCGCCGTTGCTG
GACAGGGCGCCGCCGCATCGAACCACAAGGAAGCGCTGGCATTCGCCATC
TTGGAGCAGGCG
BO14315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-PA | 1323 | CG4169-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1537 | CG4169-RB | 127..973 | 16..862 | 4220 | 99.9 | Plus |
CG4169-RA | 1686 | CG4169-RA | 276..1122 | 16..862 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16585183..16585547 | 498..862 | 1810 | 99.7 | Plus |
3L | 28110227 | 3L | 16584778..16585083 | 195..500 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 16584589..16584722 | 62..195 | 670 | 100 | Plus |
3L | 28110227 | 3L | 16584399..16584444 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:14:38 has no hits.
BO14315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:09 Download gff for
BO14315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:29 Download gff for
BO14315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:56 Download gff for
BO14315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..1122 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:00 Download gff for
BO14315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..1122 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:00 Download gff for
BO14315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16584394..16584444 | 9..61 | 94 | -> | Plus |
3L | 16584589..16584722 | 62..195 | 100 | -> | Plus |
3L | 16584779..16585082 | 196..499 | 100 | -> | Plus |
3L | 16585185..16585547 | 500..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:56 Download gff for
BO14315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16577494..16577544 | 9..61 | 94 | -> | Plus |
arm_3L | 16577689..16577822 | 62..195 | 100 | -> | Plus |
arm_3L | 16577879..16578182 | 196..499 | 100 | -> | Plus |
arm_3L | 16578285..16578647 | 500..862 | 99 | | Plus |
BO14315.complete Sequence
1354 bp assembled on 2006-10-11
GenBank Submission: FJ633084
> BO14315.complete
GAAGTTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGC
GCGCCATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGAC
CTGTCCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCAC
CGCCGATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCG
GATCACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGT
TTGGCCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCG
CAACATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGC
TCGTCGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTG
CGCTATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGT
CGACAATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGG
AACGCGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGC
AACTCGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAG
CCTGCTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCG
TGGGCGTGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTG
CAGTTCCCCAGCGGCGGCAGCAAGGCTGCCTCCGCCAACTGGTATGGTGG
AGATGCGCGCAAGGACACTTCTGGTCACCGTGCGGTCGTCGCCGTTGCTG
GACAGGGCGCCGCCGCATCGAACCACAAGGAAGCGCTGGCATTCGCCATC
CTGGAGCAGGCGCTCGGCGCCAAGGCCGCCACCAAGCGCGGCACTTCTGC
TGGACTCTTTGGCGAGGCCGTCAACTGCGCCGGCGGCGTCGGAGCCTCTG
TCAAGGCTGTGAATGCCAGCTACTCGGACGCTGGTCTGTTCGGTTTTGTG
GTCTCCGCCGACTCCAAGGACATTGGCAAGACCGTGGAGTTCCTGGTGCG
CGGCCTGAAGTCGGCTTCGGTGTCTGATAAGGATGTGGCCAGAGGCAAGG
CTCTTCTGAAGGCGCGCATCATCTCGCGCTACTCGTCGGACGGTGGTCTA
ATTAAGGAGATCGGTCGCCAGGCGGCGCTCACCCGGAACGTGCTGGAGGC
GGACGCCCTGCTTGGCGCAATCGATGGCATCTCGCAGTCGCAGGTCCAGG
AGGCGGCCAAGAAGGTGGGCAGCTCCAAGCTGGCCGTCGGCGCCATCGGG
CACCTGGCGAACGTGCCCTACGCCTCCGATTTGGCTGCAAGCTTTCTAGA
CCAT
BO14315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1323 | CG4169-PB | 1..1320 | 17..1336 | 6600 | 100 | Plus |
CG4169-RA | 1323 | CG4169-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1537 | CG4169-RB | 127..1447 | 16..1336 | 6605 | 100 | Plus |
CG4169-RA | 1686 | CG4169-RA | 276..1596 | 16..1336 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16585183..16586021 | 498..1336 | 4195 | 100 | Plus |
3L | 28110227 | 3L | 16584778..16585083 | 195..500 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 16584589..16584722 | 62..195 | 670 | 100 | Plus |
3L | 28110227 | 3L | 16584399..16584444 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:58:39 has no hits.
BO14315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:11 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 1..1323 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:02 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..1606 | 9..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:04 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 277..1596 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:12 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..1606 | 9..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:38 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 277..1596 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:38 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16584400..16584444 | 17..61 | 100 | -> | Plus |
3L | 16584589..16584722 | 62..195 | 100 | -> | Plus |
3L | 16584779..16585082 | 196..499 | 100 | -> | Plus |
3L | 16585185..16586021 | 500..1338 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:04 Download gff for
BO14315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16577500..16577544 | 17..61 | 100 | -> | Plus |
arm_3L | 16577689..16577822 | 62..195 | 100 | -> | Plus |
arm_3L | 16577879..16578182 | 196..499 | 100 | -> | Plus |
arm_3L | 16578285..16579121 | 500..1338 | 99 | | Plus |
BO14315.pep Sequence
Translation from 16 to 1354
> BO14315.pep
MACNASKTSLLRAIAKRGYATCPRPVGDLSAVNVKVLENKLVVATADATL
PVSRVSLVLGAGSRNESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQV
GGTLTTWGDRELVGYTVTTTADNAETGLRYLQDLLQPAFKPWELVDNAKT
VVNQLNAVSTEERAIELVHKAAFRNGLGNSIYSPRFQLGKLSSESLLHYV
AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSGGSKAASANWYGGDARKD
TSGHRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGE
AVNCAGGVGASVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGLKSA
SVSDKDVARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLG
AIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDLAASFLDH
BO14315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-PB | 440 | CG4169-PB | 1..440 | 1..440 | 2172 | 100 | Plus |
CG4169-PA | 440 | CG4169-PA | 1..440 | 1..440 | 2172 | 100 | Plus |
CG3731-PB | 470 | CG3731-PB | 29..456 | 20..434 | 208 | 21.6 | Plus |
CG3731-PA | 470 | CG3731-PA | 29..456 | 20..434 | 208 | 21.6 | Plus |