Clone Sequence Records
BO14316.3prime Sequence
778 bp (652 high quality bases) assembled on 2006-05-29
> BO14316.3prime
ATGGTCTAGAAAGCTTGCATCGACTAGTTCGCTCCATCTCAACACATTAA
AGTTCAGATTTCCCAAATATACAAATTTGGGTCCTTTAAAGCACCTGGTC
TCAACTCGAATGGCAAAGTCCGTTCCTGGTGGCAAGTCGAACGAATTGTG
AGGATCTTCGTCTCCGCTAATTAGGTCCTTCAGGTAATCAATTAGAAACT
GCGGACCCTCCACTATAAACTTTATAAACATTCGAGGAGTGCGCTTGGCT
TTTGAATTTGGCTGAATACTGTAGGTGTACAAAGTGCCTTCCAAGCCCCT
CTGTCCACCATAGTTCTGATTGCTCTTCTCGTGGAAGAGCAGCTCGGCCA
GAATGGAAATGAAGTAGATGCGTCGTTGGGACTCCACAGTATTGAAGCTG
GCCTTTGCCTCTCCAATGACACCGATGAATGTGTTGCTCAATTCGACCTC
CACGTTCCAGTGCCAAATGGTCTTACCGAATCCCAGGATTCTAAAATTTC
GAAATTGTCGCAATAGGCCGAAAATTGCCATTGTGTAATGGAGGCGCTTA
AGCTTCAGTCTCTCAGCACTGAATACGTTGAACGTTCGCTCATTGAGGAA
CAGGAAATGGGCAAGGAACTTGCCCAGATGGGTCAGCTTCGTTATAAAAA
AACAGCCTCCTTAGAGTGGAAGTGCAGCAGACTGATGGCTACGTCGGATT
CACTGTCTTCGTCGGAAAAGTAGCTAATTGTCGTGCGCAGGACCTGCAGC
ATGATCTTTTTCGCGCTACTCTGCTCCT
BO14316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-PA | 963 | CG7707-RA | 348..960 | 631..19 | 3040 | 99.8 | Minus |
CG7707-PA | 963 | CG7707-RA | 203..334 | 778..647 | 635 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 1138 | CG7707-RA | 296..1053 | 778..19 | 3720 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17244372..17244661 | 308..19 | 1435 | 99.7 | Minus |
3L | 28110227 | 3L | 17243810..17244047 | 747..508 | 1100 | 99.2 | Minus |
3L | 28110227 | 3L | 17244110..17244309 | 507..308 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:59:48 has no hits.
BO14316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:10 Download gff for
BO14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-PA | 203..963 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:31 Download gff for
BO14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-PA | 203..963 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:34:26 Download gff for
BO14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 296..1058 | 14..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:45 Download gff for
BO14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 296..1058 | 14..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:45 Download gff for
BO14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17243814..17244047 | 508..743 | 99 | -> | Minus |
3L | 17244110..17244309 | 308..507 | 100 | -> | Minus |
3L | 17244373..17244666 | 14..307 | 98 | | Minus |
3L | 17243731..17243765 | 744..778 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:34:26 Download gff for
BO14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17236831..17236865 | 744..778 | 97 | -> | Minus |
arm_3L | 17236914..17237147 | 508..743 | 99 | -> | Minus |
arm_3L | 17237210..17237409 | 308..507 | 100 | -> | Minus |
arm_3L | 17237473..17237766 | 14..307 | 98 | | Minus |
BO14316.5prime Sequence
865 bp (828 high quality bases) assembled on 2006-05-29
> BO14316.5prime
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTC
TAATTGATTACCTGAAGGACCTAATTAGCGGAGACGAAGATCCTCACAAT
TCGTTCGACTTGCCC
BO14316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-PA | 963 | CG7707-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 1138 | CG7707-RA | 87..941 | 9..864 | 4240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17243529..17243767 | 17..255 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 17243810..17244047 | 250..487 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 17244110..17244309 | 488..687 | 1000 | 100 | Plus |
3L | 28110227 | 3L | 17244372..17244549 | 687..864 | 875 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:10:40 has no hits.
BO14316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:11 Download gff for
BO14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-PA | 1..848 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:33 Download gff for
BO14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-PA | 1..848 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:08 Download gff for
BO14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..941 | 4..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:12 Download gff for
BO14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..941 | 4..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:12 Download gff for
BO14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17244110..17244309 | 488..687 | 100 | -> | Plus |
3L | 17244373..17244549 | 688..865 | 98 | | Plus |
3L | 17243517..17243765 | 4..253 | 98 | -> | Plus |
3L | 17243814..17244047 | 254..487 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:08 Download gff for
BO14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17236617..17236865 | 4..253 | 98 | -> | Plus |
arm_3L | 17236914..17237147 | 254..487 | 100 | -> | Plus |
arm_3L | 17237210..17237409 | 488..687 | 100 | -> | Plus |
arm_3L | 17237473..17237649 | 688..865 | 98 | | Plus |
BO14316.complete Sequence
994 bp assembled on 2006-10-11
GenBank Submission: FJ633085
> BO14316.complete
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTC
TAATTGATTACCTGAAGGACCTAATTAGCGGAGACGAAGATCCTCACAAT
TCGTTCGACTTGCCACCAGGAACGGACTTTGCCATTCGAGTTGAGACCAG
GTGCTTTAAAGGACCCAAATTTGTATATTTGGGAAATCTGAACTTTAATG
TGTTGAGATGGAGCGAACTAGTCGATGCAAGCTTTCTAGACCAT
BO14316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 963 | CG7707-PA | 1..960 | 17..976 | 4785 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 1138 | CG7707-RA | 94..1053 | 17..976 | 4785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17244372..17244661 | 687..976 | 1435 | 99.7 | Plus |
3L | 28110227 | 3L | 17243529..17243767 | 17..255 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 17243810..17244047 | 250..487 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 17244110..17244309 | 488..687 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:53:17 has no hits.
BO14316.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:15 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 1..963 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:05 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..1058 | 4..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:27 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 94..1053 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:16 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..1058 | 4..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:33 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 94..1053 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:33 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17243529..17243765 | 17..253 | 100 | -> | Plus |
3L | 17243814..17244047 | 254..487 | 100 | -> | Plus |
3L | 17244110..17244309 | 488..687 | 100 | -> | Plus |
3L | 17244373..17244661 | 688..978 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:27 Download gff for
BO14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17236629..17236865 | 17..253 | 100 | -> | Plus |
arm_3L | 17236914..17237147 | 254..487 | 100 | -> | Plus |
arm_3L | 17237210..17237409 | 488..687 | 100 | -> | Plus |
arm_3L | 17237473..17237761 | 688..978 | 98 | | Plus |
BO14316.pep Sequence
Translation from 16 to 994
> BO14316.pep
MEEAQVDKRIRLQDLPAEVLHMVMGHLDLYHHKLLRETSEELKQISTAYI
LHHHKAYEVAHSEGTSEKEQSSAKRIMLQVLRTTISYFSDEDSESDVAIS
LLHFHSKEAVFYNEADHLGKFLAHFLFLNERTFNVFSAERLKLKRLHYTM
AIFGLLRQFRNFRILGFGKTIWHWNVEVELSNTFIGVIGEAKASFNTVES
QRRIYFISILAELLFHEKSNQNYGGQRGLEGTLYTYSIQPNSKAKRTPRM
FIKFIVEGPQFLIDYLKDLISGDEDPHNSFDLPPGTDFAIRVETRCFKGP
KFVYLGNLNFNVLRWSELVDASFLDH
BO14316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-PA | 320 | CG7707-PA | 1..320 | 1..320 | 1665 | 100 | Plus |