Clone BO14316 Report

Search the DGRC for BO14316

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG7707-RA
Protein status:BO14316.pep: validated full length
Sequenced Size:994

Clone Sequence Records

BO14316.3prime Sequence

778 bp (652 high quality bases) assembled on 2006-05-29

> BO14316.3prime
ATGGTCTAGAAAGCTTGCATCGACTAGTTCGCTCCATCTCAACACATTAA
AGTTCAGATTTCCCAAATATACAAATTTGGGTCCTTTAAAGCACCTGGTC
TCAACTCGAATGGCAAAGTCCGTTCCTGGTGGCAAGTCGAACGAATTGTG
AGGATCTTCGTCTCCGCTAATTAGGTCCTTCAGGTAATCAATTAGAAACT
GCGGACCCTCCACTATAAACTTTATAAACATTCGAGGAGTGCGCTTGGCT
TTTGAATTTGGCTGAATACTGTAGGTGTACAAAGTGCCTTCCAAGCCCCT
CTGTCCACCATAGTTCTGATTGCTCTTCTCGTGGAAGAGCAGCTCGGCCA
GAATGGAAATGAAGTAGATGCGTCGTTGGGACTCCACAGTATTGAAGCTG
GCCTTTGCCTCTCCAATGACACCGATGAATGTGTTGCTCAATTCGACCTC
CACGTTCCAGTGCCAAATGGTCTTACCGAATCCCAGGATTCTAAAATTTC
GAAATTGTCGCAATAGGCCGAAAATTGCCATTGTGTAATGGAGGCGCTTA
AGCTTCAGTCTCTCAGCACTGAATACGTTGAACGTTCGCTCATTGAGGAA
CAGGAAATGGGCAAGGAACTTGCCCAGATGGGTCAGCTTCGTTATAAAAA
AACAGCCTCCTTAGAGTGGAAGTGCAGCAGACTGATGGCTACGTCGGATT
CACTGTCTTCGTCGGAAAAGTAGCTAATTGTCGTGCGCAGGACCTGCAGC
ATGATCTTTTTCGCGCTACTCTGCTCCT

BO14316.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 963 CG7707-RA 348..960 631..19 3040 99.8 Minus
CG7707-PA 963 CG7707-RA 203..334 778..647 635 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1138 CG7707-RA 296..1053 778..19 3720 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17244372..17244661 308..19 1435 99.7 Minus
3L 28110227 3L 17243810..17244047 747..508 1100 99.2 Minus
3L 28110227 3L 17244110..17244309 507..308 1000 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:59:48 has no hits.

BO14316.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:10 Download gff for BO14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-PA 203..963 16..778 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:31 Download gff for BO14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-PA 203..963 16..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:34:26 Download gff for BO14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 296..1058 14..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:45 Download gff for BO14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 296..1058 14..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:45 Download gff for BO14316.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17243814..17244047 508..743 99 -> Minus
3L 17244110..17244309 308..507 100 -> Minus
3L 17244373..17244666 14..307 98   Minus
3L 17243731..17243765 744..778 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:34:26 Download gff for BO14316.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17236831..17236865 744..778 97 -> Minus
arm_3L 17236914..17237147 508..743 99 -> Minus
arm_3L 17237210..17237409 308..507 100 -> Minus
arm_3L 17237473..17237766 14..307 98   Minus

BO14316.5prime Sequence

865 bp (828 high quality bases) assembled on 2006-05-29

> BO14316.5prime
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTC
TAATTGATTACCTGAAGGACCTAATTAGCGGAGACGAAGATCCTCACAAT
TCGTTCGACTTGCCC

BO14316.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 963 CG7707-RA 1..848 17..864 4215 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1138 CG7707-RA 87..941 9..864 4240 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17243529..17243767 17..255 1195 100 Plus
3L 28110227 3L 17243810..17244047 250..487 1190 100 Plus
3L 28110227 3L 17244110..17244309 488..687 1000 100 Plus
3L 28110227 3L 17244372..17244549 687..864 875 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 11:10:40 has no hits.

BO14316.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:11 Download gff for BO14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-PA 1..848 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:33 Download gff for BO14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-PA 1..848 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:08 Download gff for BO14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..941 4..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:12 Download gff for BO14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..941 4..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:12 Download gff for BO14316.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17244110..17244309 488..687 100 -> Plus
3L 17244373..17244549 688..865 98   Plus
3L 17243517..17243765 4..253 98 -> Plus
3L 17243814..17244047 254..487 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:08 Download gff for BO14316.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17236617..17236865 4..253 98 -> Plus
arm_3L 17236914..17237147 254..487 100 -> Plus
arm_3L 17237210..17237409 488..687 100 -> Plus
arm_3L 17237473..17237649 688..865 98   Plus

BO14316.complete Sequence

994 bp assembled on 2006-10-11

GenBank Submission: FJ633085

> BO14316.complete
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTC
TAATTGATTACCTGAAGGACCTAATTAGCGGAGACGAAGATCCTCACAAT
TCGTTCGACTTGCCACCAGGAACGGACTTTGCCATTCGAGTTGAGACCAG
GTGCTTTAAAGGACCCAAATTTGTATATTTGGGAAATCTGAACTTTAATG
TGTTGAGATGGAGCGAACTAGTCGATGCAAGCTTTCTAGACCAT

BO14316.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 963 CG7707-PA 1..960 17..976 4785 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1138 CG7707-RA 94..1053 17..976 4785 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17244372..17244661 687..976 1435 99.7 Plus
3L 28110227 3L 17243529..17243767 17..255 1195 100 Plus
3L 28110227 3L 17243810..17244047 250..487 1190 100 Plus
3L 28110227 3L 17244110..17244309 488..687 1000 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:53:17 has no hits.

BO14316.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:15 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 17..979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:05 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..1058 4..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:27 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 94..1053 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:16 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..1058 4..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:33 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 94..1053 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:33 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17243529..17243765 17..253 100 -> Plus
3L 17243814..17244047 254..487 100 -> Plus
3L 17244110..17244309 488..687 100 -> Plus
3L 17244373..17244661 688..978 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:27 Download gff for BO14316.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17236629..17236865 17..253 100 -> Plus
arm_3L 17236914..17237147 254..487 100 -> Plus
arm_3L 17237210..17237409 488..687 100 -> Plus
arm_3L 17237473..17237761 688..978 98   Plus

BO14316.pep Sequence

Translation from 16 to 994

> BO14316.pep
MEEAQVDKRIRLQDLPAEVLHMVMGHLDLYHHKLLRETSEELKQISTAYI
LHHHKAYEVAHSEGTSEKEQSSAKRIMLQVLRTTISYFSDEDSESDVAIS
LLHFHSKEAVFYNEADHLGKFLAHFLFLNERTFNVFSAERLKLKRLHYTM
AIFGLLRQFRNFRILGFGKTIWHWNVEVELSNTFIGVIGEAKASFNTVES
QRRIYFISILAELLFHEKSNQNYGGQRGLEGTLYTYSIQPNSKAKRTPRM
FIKFIVEGPQFLIDYLKDLISGDEDPHNSFDLPPGTDFAIRVETRCFKGP
KFVYLGNLNFNVLRWSELVDASFLDH

BO14316.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 320 CG7707-PA 1..320 1..320 1665 100 Plus