Clone BO14318 Report

Search the DGRC for BO14318

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG2336-RA
Protein status:BO14318.pep: validated full length
Sequenced Size:1000

Clone Sequence Records

BO14318.3prime Sequence

796 bp (710 high quality bases) assembled on 2006-05-29

> BO14318.3prime
ATGGTCTAGAAAGCTTGCGTACTGGACGAGTGCCTCGCGGGCCAACTTTG
CCCAGATGGTGCCAACTGGATGGACAACCACTTTGCGCTTTCCCTTAAAG
GTCAATGACTCGTAGTGGTAGCCGTCGATAATCTTTGCGGAGTTAAAGTT
GCAAACGAAGGGCAGAGTGATTTCGTTCAGATTAACGTAGTAACAATTAA
TCGTGAAGATCAGCGGACTTAATCGGGCCACCAGTTCGTAGGCGGCTGCC
AGTTTTTCGTTCCAAATGCACACAGAGGTAAAGTTAAGTGGTTCCTTAGC
CTGCAGCTCAACGGCCTCCTTCATGGTTCGAAAGGTGTGCAGGGTTATGA
CCCCGGTGGGTCCATCAGCCAAGTAACGATGGCTAAGGTCGTAGACCAGC
ATGGGACTAGCATTTTCTGGAACAGTCTTGGGATTTCCAACTATTCTCTT
TGCCTGTAAGTGACCTATTCTCTCCAGTGTCATTATATAAACCGGATGCC
CGGAGATATCCGTGCTCAACGGTTCCAGGCGATCCCTTATGCGATCCACG
AACTCCTCCAATATGGATTCCTGCAAGAAAAGAGTGGCCACCGCATTGCA
GGCGAAGGGATCGTGAAGAGACTCAACGAGATAGTGCAAAGCGCAATTGA
TGTCTCCATCTTCGCAGAGAATCATCAGCCGCGGCGAGTTCCACTGGTAT
TTAACTTGCACTTCCGGTTCCGGTTCATCTTCACTCATTGAACTCGATCG
GGAATGGTATGAAAGCCTAGGCACCTTCTTTGGCTTCTCAGGAGCA

BO14318.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-PA 969 CG2336-RA 189..966 796..19 3890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 1358 CG2336-RA 322..1099 796..19 3890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6581235..6582012 796..19 3890 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:26:14 has no hits.

BO14318.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:13 Download gff for BO14318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-PA 190..969 16..795 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:36 Download gff for BO14318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-PA 190..969 16..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:53:56 Download gff for BO14318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 323..1105 12..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:07 Download gff for BO14318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 323..1105 12..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:07 Download gff for BO14318.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6581236..6582018 12..795 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:53:56 Download gff for BO14318.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2406958..2407740 12..795 99   Minus

BO14318.5prime Sequence

920 bp (794 high quality bases) assembled on 2006-05-29

> BO14318.5prime
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCGTTGAGCTGCAG
GCTAAGGAACCACTTAACTTTACCTCTGTGTGCATTTGGAACGAAAAACT
GGCAGCCGCCTACGAACTGGTGGCCCGATTAAGTCCGCTGATCTTCACGA
TTAATTGTTACTACGTTAATCTGAACGAAATCACTCTGCCCTTCGTTTGC
AACTTTAACTCCGCAAAGATTATCGACGGCTACCACTACCAGTCATTGAC
CTTTAAGGGAAAGCGCAAAG

BO14318.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-PA 969 CG2336-RA 1..904 17..920 4495 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 1358 CG2336-RA 134..1037 17..920 4505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6581073..6581950 43..920 4375 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 05:35:04 has no hits.

BO14318.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:14 Download gff for BO14318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:37 Download gff for BO14318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:48 Download gff for BO14318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..1037 17..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:34 Download gff for BO14318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..1037 17..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:34 Download gff for BO14318.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6581073..6581950 43..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:48 Download gff for BO14318.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2406795..2407672 43..920 99   Plus

BO14318.complete Sequence

1000 bp assembled on 2006-10-11

GenBank Submission: FJ633086

> BO14318.complete
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCGTTGAGCTGCAG
GCTAAGGAACCACTTAACTTTACCTCTGTGTGCATTTGGAACGAAAAACT
GGCAGCCGCCTACGAACTGGTGGCCCGATTAAGTCCGCTGATCTTCACGA
TTAATTGTTACTACGTTAATCTGAACGAAATCACTCTGCCCTTCGTTTGC
AACTTTAACTCCGCAAAGATTATCGACGGCTACCACTACGAGTCATTGAC
CTTTAAGGGAAAGCGCAAAGTGGTTGTCCATCCAGTTGGCACCATCTGGG
CAAAGTTGGCCCGCGAGGCACTCGTCCAGTACGCAAGCTTTCTAGACCAT

BO14318.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 969 CG2336-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-RA 1358 CG2336-RA 134..1099 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6581073..6582012 43..982 4700 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:26:43 has no hits.

BO14318.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:25 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 1..969 17..985 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:08 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 64..1035 17..989 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:06 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..1099 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:25 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 64..1035 17..989 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:34 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
CG2336-RA 134..1099 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:34 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6581073..6582012 43..984 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:06 Download gff for BO14318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2406795..2407734 43..984 99   Plus

BO14318.pep Sequence

Translation from 16 to 1000

> BO14318.pep
MMYNNRPTAISLEEEVQYIYKYPLLPTPLIDYGFIYNLVCNKPRDVSVPL
ILEIETEFKSKDSAPEKPKKVPRLSYHSRSSSMSEDEPEPEVQVKYQWNS
PRLMILCEDGDINCALHYLVESLHDPFACNAVATLFLQESILEEFVDRIR
DRLEPLSTDISGHPVYIMTLERIGHLQAKRIVGNPKTVPENASPMLVYDL
SHRYLADGPTGVITLHTFRTMKEAVELQAKEPLNFTSVCIWNEKLAAAYE
LVARLSPLIFTINCYYVNLNEITLPFVCNFNSAKIIDGYHYESLTFKGKR
KVVVHPVGTIWAKLAREALVQYASFLDH

BO14318.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2336-PA 322 CG2336-PA 1..322 1..322 1693 100 Plus
CG12516-PB 300 CG12516-PB 30..298 45..311 559 41.3 Plus
CG15717-PE 252 CG15717-PE 38..250 97..311 531 48.8 Plus
CG15717-PC 252 CG15717-PC 38..250 97..311 531 48.8 Plus
CG15717-PA 252 CG15717-PA 38..250 97..311 531 48.8 Plus