Clone Sequence Records
BO14318.3prime Sequence
796 bp (710 high quality bases) assembled on 2006-05-29
> BO14318.3prime
ATGGTCTAGAAAGCTTGCGTACTGGACGAGTGCCTCGCGGGCCAACTTTG
CCCAGATGGTGCCAACTGGATGGACAACCACTTTGCGCTTTCCCTTAAAG
GTCAATGACTCGTAGTGGTAGCCGTCGATAATCTTTGCGGAGTTAAAGTT
GCAAACGAAGGGCAGAGTGATTTCGTTCAGATTAACGTAGTAACAATTAA
TCGTGAAGATCAGCGGACTTAATCGGGCCACCAGTTCGTAGGCGGCTGCC
AGTTTTTCGTTCCAAATGCACACAGAGGTAAAGTTAAGTGGTTCCTTAGC
CTGCAGCTCAACGGCCTCCTTCATGGTTCGAAAGGTGTGCAGGGTTATGA
CCCCGGTGGGTCCATCAGCCAAGTAACGATGGCTAAGGTCGTAGACCAGC
ATGGGACTAGCATTTTCTGGAACAGTCTTGGGATTTCCAACTATTCTCTT
TGCCTGTAAGTGACCTATTCTCTCCAGTGTCATTATATAAACCGGATGCC
CGGAGATATCCGTGCTCAACGGTTCCAGGCGATCCCTTATGCGATCCACG
AACTCCTCCAATATGGATTCCTGCAAGAAAAGAGTGGCCACCGCATTGCA
GGCGAAGGGATCGTGAAGAGACTCAACGAGATAGTGCAAAGCGCAATTGA
TGTCTCCATCTTCGCAGAGAATCATCAGCCGCGGCGAGTTCCACTGGTAT
TTAACTTGCACTTCCGGTTCCGGTTCATCTTCACTCATTGAACTCGATCG
GGAATGGTATGAAAGCCTAGGCACCTTCTTTGGCTTCTCAGGAGCA
BO14318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-PA | 969 | CG2336-RA | 189..966 | 796..19 | 3890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 1358 | CG2336-RA | 322..1099 | 796..19 | 3890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6581235..6582012 | 796..19 | 3890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:26:14 has no hits.
BO14318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:13 Download gff for
BO14318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-PA | 190..969 | 16..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:36 Download gff for
BO14318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-PA | 190..969 | 16..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:53:56 Download gff for
BO14318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 323..1105 | 12..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:07 Download gff for
BO14318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 323..1105 | 12..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:07 Download gff for
BO14318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6581236..6582018 | 12..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:53:56 Download gff for
BO14318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2406958..2407740 | 12..795 | 99 | | Minus |
BO14318.5prime Sequence
920 bp (794 high quality bases) assembled on 2006-05-29
> BO14318.5prime
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCGTTGAGCTGCAG
GCTAAGGAACCACTTAACTTTACCTCTGTGTGCATTTGGAACGAAAAACT
GGCAGCCGCCTACGAACTGGTGGCCCGATTAAGTCCGCTGATCTTCACGA
TTAATTGTTACTACGTTAATCTGAACGAAATCACTCTGCCCTTCGTTTGC
AACTTTAACTCCGCAAAGATTATCGACGGCTACCACTACCAGTCATTGAC
CTTTAAGGGAAAGCGCAAAG
BO14318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-PA | 969 | CG2336-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 1358 | CG2336-RA | 134..1037 | 17..920 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6581073..6581950 | 43..920 | 4375 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:35:04 has no hits.
BO14318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:14 Download gff for
BO14318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:37 Download gff for
BO14318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:48 Download gff for
BO14318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..1037 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:34 Download gff for
BO14318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..1037 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:34 Download gff for
BO14318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6581073..6581950 | 43..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:48 Download gff for
BO14318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2406795..2407672 | 43..920 | 99 | | Plus |
BO14318.complete Sequence
1000 bp assembled on 2006-10-11
GenBank Submission: FJ633086
> BO14318.complete
GAAGTTATCAGTCGACATGATGTACAACAACCGACCCACGGCTATCAGTC
TAGAAGAGGAGGTTCAATATATCTATAAGTACCCTTTGCTGCCGACTCCA
CTGATTGATTATGGATTTATCTACAATCTGGTTTGCAACAAGCCTCGGGA
TGTCAGTGTGCCGTTGATCCTAGAAATTGAGACAGAGTTCAAGTCCAAAG
ACAGTGCTCCTGAGAAGCCAAAGAAGGTGCCTAGGCTTTCATACCATTCC
CGATCGAGTTCAATGAGTGAAGATGAACCGGAACCGGAAGTGCAAGTTAA
ATACCAGTGGAACTCGCCGCGGCTGATGATTCTCTGCGAAGATGGAGACA
TCAATTGCGCTTTGCACTATCTCGTTGAGTCTCTTCACGATCCCTTCGCC
TGCAATGCGGTGGCCACTCTTTTCTTGCAGGAATCCATATTGGAGGAGTT
CGTGGATCGCATAAGGGATCGCCTGGAACCGTTGAGCACGGATATCTCCG
GGCATCCGGTTTATATAATGACACTGGAGAGAATAGGTCACTTACAGGCA
AAGAGAATAGTTGGAAATCCCAAGACTGTTCCAGAAAATGCTAGTCCCAT
GCTGGTCTACGACCTTAGCCATCGTTACTTGGCTGATGGACCCACCGGGG
TCATAACCCTGCACACCTTTCGAACCATGAAGGAGGCCGTTGAGCTGCAG
GCTAAGGAACCACTTAACTTTACCTCTGTGTGCATTTGGAACGAAAAACT
GGCAGCCGCCTACGAACTGGTGGCCCGATTAAGTCCGCTGATCTTCACGA
TTAATTGTTACTACGTTAATCTGAACGAAATCACTCTGCCCTTCGTTTGC
AACTTTAACTCCGCAAAGATTATCGACGGCTACCACTACGAGTCATTGAC
CTTTAAGGGAAAGCGCAAAGTGGTTGTCCATCCAGTTGGCACCATCTGGG
CAAAGTTGGCCCGCGAGGCACTCGTCCAGTACGCAAGCTTTCTAGACCAT
BO14318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 969 | CG2336-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-RA | 1358 | CG2336-RA | 134..1099 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6581073..6582012 | 43..982 | 4700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:43 has no hits.
BO14318.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:25 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 1..969 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:08 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 64..1035 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:06 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..1099 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:25 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 64..1035 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:34 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2336-RA | 134..1099 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:34 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6581073..6582012 | 43..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:06 Download gff for
BO14318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2406795..2407734 | 43..984 | 99 | | Plus |
BO14318.pep Sequence
Translation from 16 to 1000
> BO14318.pep
MMYNNRPTAISLEEEVQYIYKYPLLPTPLIDYGFIYNLVCNKPRDVSVPL
ILEIETEFKSKDSAPEKPKKVPRLSYHSRSSSMSEDEPEPEVQVKYQWNS
PRLMILCEDGDINCALHYLVESLHDPFACNAVATLFLQESILEEFVDRIR
DRLEPLSTDISGHPVYIMTLERIGHLQAKRIVGNPKTVPENASPMLVYDL
SHRYLADGPTGVITLHTFRTMKEAVELQAKEPLNFTSVCIWNEKLAAAYE
LVARLSPLIFTINCYYVNLNEITLPFVCNFNSAKIIDGYHYESLTFKGKR
KVVVHPVGTIWAKLAREALVQYASFLDH
BO14318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2336-PA | 322 | CG2336-PA | 1..322 | 1..322 | 1693 | 100 | Plus |
CG12516-PB | 300 | CG12516-PB | 30..298 | 45..311 | 559 | 41.3 | Plus |
CG15717-PE | 252 | CG15717-PE | 38..250 | 97..311 | 531 | 48.8 | Plus |
CG15717-PC | 252 | CG15717-PC | 38..250 | 97..311 | 531 | 48.8 | Plus |
CG15717-PA | 252 | CG15717-PA | 38..250 | 97..311 | 531 | 48.8 | Plus |