Clone Sequence Records
BO14324.3prime Sequence
855 bp (746 high quality bases) assembled on 2006-05-29
> BO14324.3prime
ATGGTCTAGAAAGCTTGCTTTGCTAGGCGAATACCAAGGGTCCTCCTTGA
CCTGCGGAATATTGTACCTGATCTTCACCGGTGCTAGAATATGCATAATC
ATGTGCTTGCACTCGCTGGAAGCTGATGGGGATTTGGGGAAGACCAGCGA
TTGATTGATGCGCTTGAGCAGGATGTGCACATTGGAGCCATCGTAGGGAA
GGCGTCCAAAGACCATCGCATAGCAGACGACGCCGCAGGCCCAGATGTCC
GACATGAAAGGATCATAGGCGACGCCCTTGAGGATCTCTGGACTGGCGTA
GGCATAGCTGCCGCAGAAGGTTTTCGAGAGTATCACTTGATTGTCGGAGG
TTCGGGTATCCTTCCTTGCGAACCCGAAGTCGATCAGTTTCAGATTCCAG
TTCTCATCCAGCAGCAGATTCTCGCACTTAATATCCCGATGCACCACTCC
CTTGCTGTGGATGTACTCCACGGCACTCACCAGCTGCTTGAATAGCGTAC
GTGATTGCGGCTCGTCCAGAAACTTTCGCTCACGGACGTAGTCCAGAAGC
GTTCCATTCTCGGCCAGCTGCATTATCAAGTACACCCTATGACTGGTCTC
GATGCTCTGATAAAAAGTTATCAGATTTTCGTGGTGCAGACCCTTCACCG
CCTCGATCTCTCGCGGCAGGAACTTTTGCGTGTACTCGGAGGGAGCCTTC
ACTTTGGATATGATCTTGACAGCCACCCGCTTTCCGTACTCCTCGGAGAA
GCCAATCTTCACCTTGGCATAGTTTCCGGTGCCAATAACCTTACCGAGTA
TGATGCCATGCTCCTCAAGAATGGTTTTCTGCGGCTTCCACTTGTCGTCG
GCCTT
BO14324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-PA | 1014 | CG9222-RA | 175..1011 | 855..19 | 4035 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-RA | 1290 | CG9222-RA | 339..1175 | 855..19 | 4095 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6131746..6132059 | 588..275 | 1525 | 99 | Minus |
2L | 23513712 | 2L | 6131420..6131689 | 855..586 | 1305 | 98.9 | Minus |
2L | 23513712 | 2L | 6132112..6132369 | 276..19 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:23:55 has no hits.
BO14324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:26 Download gff for
BO14324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-PA | 175..1014 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:52 Download gff for
BO14324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-PA | 175..1014 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:17:08 Download gff for
BO14324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 339..1180 | 11..855 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:08 Download gff for
BO14324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 339..1180 | 11..855 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:08 Download gff for
BO14324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6131420..6131688 | 587..855 | 98 | -> | Minus |
2L | 6131748..6132058 | 276..586 | 99 | -> | Minus |
2L | 6132113..6132374 | 11..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:17:08 Download gff for
BO14324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6131420..6131688 | 587..855 | 98 | -> | Minus |
arm_2L | 6131748..6132058 | 276..586 | 99 | -> | Minus |
arm_2L | 6132113..6132374 | 11..275 | 98 | | Minus |
BO14324.5prime Sequence
918 bp (802 high quality bases) assembled on 2006-05-29
> BO14324.5prime
GAAGTTATCAGTCGACATGGCGACATCTCCCAGAAGGAAAAACGATCAAG
GCGGAGTAATTGGCGCTAGCTCATCGCAGGACCTCGTCACTGACCAGAAC
TCGGGTCGTCGTCAGGAGCAGAAGGTCTACACCTTCAGTGACCGGCCACC
ACAACCAAAGCCACCGGCACCATCCGGAGTCGTTCCGGTAAAGGCCGACG
ACAAGTCGAAGCCGCAGAAAACCATTCTTGAGGAGCATGGCATCATACTC
GGTAAGGTTATTGGCACCGGAAACTATGCCAAGGTGAAGATTGGCTTCTC
CGAGGAGTACGGAAAGCGGGTGGCTGTCAAGATCATATCCAAAGTGAAGG
CTCCCTCCGAGTACACGCAAAAGTTCCTGCCGCGAGAGATCGAGGCGGTG
AAGGGTCTGCACCACGAAAATCTGATAACTTTTTATCAGAGCATCGAGAC
CAGTCATAGGGTGTACTTGATAATGCAGCTGGCCGAGAATGGAACGCTTC
TGGACTACGTCCGTGAGCGAAAGTTTCTGGACGAGCCGCAATCACGTACG
CTATTCAAGCAGCTGGTGAGTGCCGTGGAGTACATCCACAGCAAGGGAGT
GGTGCATCGGGATATTAAGTGCGAGAATCTGCTGCTGGATGAGAACTGGA
ATCTGAAACTGATCGACTTCGGGTTCGCAAGGAAGGATACCCGAACCTCC
GACAATCAAGTGATACTCTCGAAAACCTTCTGCGGCAGCTATGCCTACGC
CAGTCCAGAGATCCTCAAGGGCGTCGCCTATGATCCTTTCATGTCGGACA
TCTGGGCCTGCGGCGTCGTCTGCTATGCGATGGTCTTTGGACGCCTTCCC
TACCATGGCTCCAATGTGCACATCCTGCTCAAGCGCATCAATCAATCGCT
GGTCTTCCCCCAATCCCC
BO14324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-PA | 1014 | CG9222-RA | 1..902 | 17..918 | 4310 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-RA | 1290 | CG9222-RA | 165..1066 | 17..918 | 4390 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6131284..6131689 | 55..460 | 2000 | 99.5 | Plus |
2L | 23513712 | 2L | 6131746..6132059 | 458..771 | 1525 | 99 | Plus |
2L | 23513712 | 2L | 6132112..6132260 | 770..918 | 715 | 98.7 | Plus |
2L | 23513712 | 2L | 6131187..6131226 | 17..56 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:24:22 has no hits.
BO14324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:27 Download gff for
BO14324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:53 Download gff for
BO14324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:11:31 Download gff for
BO14324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 165..1066 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:59 Download gff for
BO14324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 165..1066 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:59 Download gff for
BO14324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6131187..6131226 | 17..56 | 97 | -> | Plus |
2L | 6131286..6131688 | 57..459 | 99 | -> | Plus |
2L | 6131748..6132058 | 460..770 | 99 | -> | Plus |
2L | 6132113..6132260 | 771..918 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:11:31 Download gff for
BO14324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6132113..6132260 | 771..918 | 98 | | Plus |
arm_2L | 6131187..6131226 | 17..56 | 97 | -> | Plus |
arm_2L | 6131286..6131688 | 57..459 | 99 | -> | Plus |
arm_2L | 6131748..6132058 | 460..770 | 99 | -> | Plus |
BO14324.complete Sequence
1045 bp assembled on 2006-10-11
GenBank Submission: FJ633087
> BO14324.complete
GAAGTTATCAGTCGACATGGCGACATCTCCCAGAAGGAAAAACGATCAAG
GCGGAGTAATTGGCGCTAGCTCATCGCAGGACCTCGTCACTGACCAGAAC
TCGGGTCGTCGTCAGGAGCAGAAGGTCTACACCTTCAGTGACCGGCCACC
ACAACCAAAGCCACCGGCACCATCCGGAGTCGTTCCGGTAAAGGCCGACG
ACAAGTCGAAGCCGCAGAAAACCATTCTTGAGGAGCATGGCATCATACTC
GGTAAGGTTATTGGCACCGGAAACTATGCCAAGGTGAAGATTGGCTTCTC
CGAGGAGTACGGAAAGCGGGTGGCTGTCAAGATCATATCCAAAGTGAAGG
CTCCCTCCGAGTACACGCAAAAGTTCCTGCCGCGAGAGATCGAGGCGGTG
AAGGGTCTGCACCACGAAAATCTGATAACTTTTTATCAGAGCATCGAGAC
CAGTCATAGGGTGTACTTGATAATGCAGCTGGCCGAGAATGGAACGCTTC
TGGACTACGTCCGTGAGCGAAAGTTTCTGGACGAGCCGCAATCACGTACG
CTATTCAAGCAGCTGGTGAGTGCCGTGGAGTACATCCACAGCAAGGGAGT
GGTGCATCGGGATATTAAGTGCGAGAATCTGCTGCTGGATGAGAACTGGA
ATCTGAAACTGATCGACTTCGGGTTCGCAAGGAAGGATACCCGAACCTCC
GACAATCAAGTGATACTCTCGAAAACCTTCTGCGGCAGCTATGCCTACGC
CAGTCCAGAGATCCTCAAGGGCGTCGCCTATGATCCTTTCATGTCGGACA
TCTGGGCCTGCGGCGTCGTCTGCTATGCGATGGTCTTTGGACGCCTTCCC
TACGATGGCTCCAATGTGCACATCCTGCTCAAGCGCATCAATCAATCGCT
GGTCTTCCCCAAATCCCCATCAGCTTCCAGCGAGTGCAAGCACATGATTA
TGCATATTCTAGCACCGGTGAAGATCAGGTACAATATTCCGCAGGTCAAG
GAGGACCCTTGGTATTCGCCTAGCAAAGCAAGCTTTCTAGACCAT
BO14324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-RA | 1014 | CG9222-PA | 1..1011 | 17..1027 | 4965 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-RA | 1290 | CG9222-RA | 165..1175 | 17..1027 | 4965 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6131284..6131689 | 55..460 | 2000 | 99.5 | Plus |
2L | 23513712 | 2L | 6131746..6132059 | 458..771 | 1525 | 99 | Plus |
2L | 23513712 | 2L | 6132112..6132369 | 770..1027 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 6131187..6131226 | 17..56 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:48 has no hits.
BO14324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:31 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:11 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 165..1180 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:21 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 165..1175 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:32 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 165..1180 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:58 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9222-RA | 165..1175 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:58 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6131187..6131226 | 17..56 | 97 | -> | Plus |
2L | 6131286..6131688 | 57..459 | 99 | -> | Plus |
2L | 6131748..6132058 | 460..770 | 99 | -> | Plus |
2L | 6132113..6132369 | 771..1029 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:21 Download gff for
BO14324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6131748..6132058 | 460..770 | 99 | -> | Plus |
arm_2L | 6131187..6131226 | 17..56 | 97 | -> | Plus |
arm_2L | 6131286..6131688 | 57..459 | 99 | -> | Plus |
arm_2L | 6132113..6132369 | 771..1029 | 99 | | Plus |
BO14324.pep Sequence
Translation from 16 to 1045
> BO14324.pep
MATSPRRKNDQGGVIGASSSQDLVTDQNSGRRQEQKVYTFSDRPPQPKPP
APSGVVPVKADDKSKPQKTILEEHGIILGKVIGTGNYAKVKIGFSEEYGK
RVAVKIISKVKAPSEYTQKFLPREIEAVKGLHHENLITFYQSIETSHRVY
LIMQLAENGTLLDYVRERKFLDEPQSRTLFKQLVSAVEYIHSKGVVHRDI
KCENLLLDENWNLKLIDFGFARKDTRTSDNQVILSKTFCGSYAYASPEIL
KGVAYDPFMSDIWACGVVCYAMVFGRLPYDGSNVHILLKRINQSLVFPKS
PSASSECKHMIMHILAPVKIRYNIPQVKEDPWYSPSKASFLDH
BO14324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9222-PA | 337 | CG9222-PA | 1..337 | 1..337 | 1760 | 100 | Plus |
CG14305-PD | 302 | CG14305-PD | 23..290 | 71..332 | 482 | 36.4 | Plus |
CG14305-PC | 302 | CG14305-PC | 23..290 | 71..332 | 482 | 36.4 | Plus |
CG14305-PA | 302 | CG14305-PA | 23..290 | 71..332 | 482 | 36.4 | Plus |
CG43143-PD | 1180 | CG11870-PD | 49..295 | 53..305 | 471 | 39 | Plus |