Clone Sequence Records
BO14325.3prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-29
> BO14325.3prime
ATGGTCTAGAAAGCTTGCGAATGAAGGACCAGAAACATCGCCCTGGTTGG
CCAGGAGCAATCCCGGTGGCATATCATACTCATCCCGACCACCCCACTTA
CGACTCTTTTGCTTGTACCAGGGACCTTTGCGCGTCTCCAAGTACATATA
GTATGCCGAATCCTTGGTAAAGAACACATCGTCCTTCACCAATGCCAGGC
GGATCATGGCGCCAACCTTAAGTATACCTCCAACAAGTGTTATGAACAGA
ATCGGAAGGACCCCCCAATGATGCATGACGGCTTTCTTTGAGAACACACA
AGGATCATCATCTAAAAACGGTACCAGATTCTTTCTTAACAATAGAGTGC
GTGTTGGCGGTGTTGCTTTTAACTTTGGCACAACTAATAAAGGAGCACGG
TGTAGAAGAGCAATGGTCGTAAGACGAAGCGCCATGTCGACTGATAACT
BO14325.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12250-PA | 420 | CG12250-RA | 1..417 | 435..19 | 2010 | 99.2 | Minus |
CG12250-PB | 441 | CG12250-RB | 1..175 | 435..261 | 875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ymp-RA | 1270 | CG12250-RA | 97..513 | 435..19 | 2040 | 99.3 | Minus |
ymp-RC | 1247 | CG12250-RC | 97..512 | 435..20 | 2035 | 99.3 | Minus |
ymp-RD | 1066 | CG12250-RD | 97..511 | 435..21 | 2030 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25592721..25592886 | 97..262 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 25592583..25592661 | 21..99 | 365 | 97.5 | Plus |
3R | 32079331 | 3R | 25608726..25608798 | 260..332 | 365 | 100 | Plus |
3R | 32079331 | 3R | 25608969..25609031 | 373..435 | 315 | 100 | Plus |
3R | 32079331 | 3R | 25608865..25608906 | 333..374 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:48 has no hits.
BO14325.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:28 Download gff for
BO14325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-PA | 1..420 | 18..435 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:54 Download gff for
BO14325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-PA | 1..420 | 18..435 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:15 Download gff for
BO14325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ymp-RA | 97..513 | 19..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:16 Download gff for
BO14325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ymp-RA | 97..513 | 19..435 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:16 Download gff for
BO14325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25592576..25592658 | 11..96 | 93 | <- | Plus |
3R | 25592721..25592885 | 97..261 | 99 | <- | Plus |
3R | 25608728..25608798 | 262..332 | 100 | <- | Plus |
3R | 25608865..25608904 | 333..372 | 100 | <- | Plus |
3R | 25608969..25609031 | 373..435 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:15 Download gff for
BO14325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21418443..21418607 | 97..261 | 99 | <- | Plus |
arm_3R | 21434450..21434520 | 262..332 | 100 | <- | Plus |
arm_3R | 21434587..21434626 | 333..372 | 100 | <- | Plus |
arm_3R | 21418298..21418380 | 11..96 | 93 | <- | Plus |
arm_3R | 21434691..21434753 | 373..435 | 100 | | Plus |
BO14325.5prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-29
> BO14325.5prime
GAAGTTATCAGTCGACATGGCGCTTCGTCTTACGACCATTGCTCTTCTAC
ACCGTGCTCCTTTATTAGTTGTGCCAAAGTTAAAAGCAACACCGCCAACA
CGCACTCTATTGTTAAGAAAGAATCTGGTACCGTTTTTAGATGATGATCC
TTGTGTGTTCTCAAAGAAAGCCGTCATGCATCATTGGGGGGTCCTTCCGA
TTCTGTTCATAACACTTGTTGGAGGTATACTTAAGGTTGGCGCCATGATC
CGCCTGGCATTGGTGAAGGACGATGTGTTCTTTACCAAGGATTCGGCATA
CTATATGTACTTGGAGACGCGCAAAGGTCCCTGGTACAAGCAAAAGAGTC
GTAAGTGGGGTGGTCGGGATGAGTATGATATGCCACCGGGATTGCTCCTG
GCCAACCAGGGCGATGTTTCTGGTCCTTCATTCGCAAGCTTTCTAGACC
BO14325.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12250-PA | 420 | CG12250-RA | 1..417 | 17..433 | 2010 | 99.2 | Plus |
CG12250-PB | 441 | CG12250-RB | 1..175 | 17..191 | 875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ymp-RA | 1270 | CG12250-RA | 97..513 | 17..433 | 2040 | 99.3 | Plus |
ymp-RC | 1247 | CG12250-RC | 97..512 | 17..432 | 2035 | 99.3 | Plus |
ymp-RD | 1066 | CG12250-RD | 97..511 | 17..431 | 2030 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25592721..25592886 | 355..190 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 25592583..25592661 | 431..353 | 365 | 97.5 | Minus |
3R | 32079331 | 3R | 25608726..25608798 | 192..120 | 365 | 100 | Minus |
3R | 32079331 | 3R | 25608969..25609031 | 79..17 | 315 | 100 | Minus |
3R | 32079331 | 3R | 25608865..25608906 | 119..78 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:19:24 has no hits.
BO14325.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:29 Download gff for
BO14325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-PA | 1..420 | 17..434 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:56 Download gff for
BO14325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-PA | 1..420 | 17..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:26:25 Download gff for
BO14325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ymp-RA | 97..513 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:24 Download gff for
BO14325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ymp-RA | 97..513 | 17..433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:24 Download gff for
BO14325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25592576..25592658 | 356..441 | 93 | <- | Minus |
3R | 25592721..25592885 | 191..355 | 99 | <- | Minus |
3R | 25608728..25608798 | 120..190 | 100 | <- | Minus |
3R | 25608865..25608904 | 80..119 | 100 | <- | Minus |
3R | 25608969..25609031 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:26:25 Download gff for
BO14325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21418298..21418380 | 356..441 | 93 | <- | Minus |
arm_3R | 21418443..21418607 | 191..355 | 99 | <- | Minus |
arm_3R | 21434450..21434520 | 120..190 | 100 | <- | Minus |
arm_3R | 21434587..21434626 | 80..119 | 100 | <- | Minus |
arm_3R | 21434691..21434753 | 17..79 | 100 | | Minus |
BO14325.complete Sequence
451 bp assembled on 2006-10-11
GenBank Submission: FJ633088
> BO14325.complete
GAAGTTATCAGTCGACATGGCGCTTCGTCTTACGACCATTGCTCTTCTAC
ACCGTGCTCCTTTATTAGTTGTGCCAAAGTTAAAAGCAACACCGCCAACA
CGCACTCTATTGTTAAGAAAGAATCTGGTACCGTTTTTAGATGATGATCC
TTGTGTGTTCTCAAAGAAAGCCGTCATGCATCATTGGGGGGTCCTTCCGA
TTCTGTTCATAACACTTGTTGGAGGTATACTTAAGGTTGGCGCCATGATC
CGCCTGGCATTGGTGAAGGACGATGTGTTCTTTACCAAGGATTCGGCATA
CTATATGTACTTGGAGACGCGCAAAGGTCCCTGGTACAAGCAAAAGAGTC
GTAAGTGGGGTGGTCGGGATGAGTATGATATGCCACCGGGATTGCTCCTG
GCCAACCAGGGCGATGTTTCTGGTCCTTCATTCGCAAGCTTTCTAGACCA
T
BO14325.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ymp-RA | 420 | CG12250-PA | 1..417 | 17..433 | 2040 | 99.3 | Plus |
ymp-RC | 522 | CG12250-PC | 1..416 | 17..432 | 2035 | 99.3 | Plus |
ymp-RD | 561 | CG12250-PD | 1..415 | 17..431 | 2030 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ymp-RA | 1270 | CG12250-RA | 97..513 | 17..433 | 2040 | 99.3 | Plus |
ymp-RC | 1247 | CG12250-RC | 97..512 | 17..432 | 2035 | 99.3 | Plus |
ymp-RD | 1066 | CG12250-RD | 97..511 | 17..431 | 2030 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25592721..25592886 | 355..190 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 25592583..25592661 | 431..353 | 365 | 97.5 | Minus |
3R | 32079331 | 3R | 25608726..25608798 | 192..120 | 365 | 100 | Minus |
3R | 32079331 | 3R | 25608969..25609031 | 79..17 | 315 | 100 | Minus |
3R | 32079331 | 3R | 25608865..25608906 | 119..78 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:26:28 has no hits.
BO14325.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:36 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-RA | 1..420 | 17..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:44 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-RA | 97..513 | 17..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:38 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ymp-RA | 97..513 | 17..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:37 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12250-RA | 98..514 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:18 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ymp-RA | 97..513 | 17..435 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:18 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25608728..25608798 | 120..190 | 100 | <- | Minus |
3R | 25608865..25608904 | 80..119 | 100 | <- | Minus |
3R | 25608969..25609031 | 17..79 | 100 | | Minus |
3R | 25592581..25592658 | 356..435 | 93 | <- | Minus |
3R | 25592721..25592885 | 191..355 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:38 Download gff for
BO14325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21418303..21418380 | 356..435 | 93 | <- | Minus |
arm_3R | 21418443..21418607 | 191..355 | 99 | <- | Minus |
arm_3R | 21434450..21434520 | 120..190 | 100 | <- | Minus |
arm_3R | 21434587..21434626 | 80..119 | 100 | <- | Minus |
arm_3R | 21434691..21434753 | 17..79 | 100 | | Minus |
BO14325.pep Sequence
Translation from 16 to 451
> BO14325.pep
MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK
KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE
TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSFASFLDH
BO14325.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ymp-PC | 173 | CG12250-PC | 1..145 | 1..145 | 734 | 96.6 | Plus |
ymp-PA | 139 | CG12250-PA | 1..139 | 1..139 | 733 | 100 | Plus |
ymp-PD | 186 | CG12250-PD | 1..139 | 1..139 | 730 | 99.3 | Plus |
ymp-PB | 146 | CG12250-PB | 1..140 | 1..139 | 438 | 63.6 | Plus |