Clone BO14325 Report

Search the DGRC for BO14325

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptymp-RA
Protein status:BO14325.pep: validated full length
Sequenced Size:451

Clone Sequence Records

BO14325.3prime Sequence

449 bp (448 high quality bases) assembled on 2006-05-29

> BO14325.3prime
ATGGTCTAGAAAGCTTGCGAATGAAGGACCAGAAACATCGCCCTGGTTGG
CCAGGAGCAATCCCGGTGGCATATCATACTCATCCCGACCACCCCACTTA
CGACTCTTTTGCTTGTACCAGGGACCTTTGCGCGTCTCCAAGTACATATA
GTATGCCGAATCCTTGGTAAAGAACACATCGTCCTTCACCAATGCCAGGC
GGATCATGGCGCCAACCTTAAGTATACCTCCAACAAGTGTTATGAACAGA
ATCGGAAGGACCCCCCAATGATGCATGACGGCTTTCTTTGAGAACACACA
AGGATCATCATCTAAAAACGGTACCAGATTCTTTCTTAACAATAGAGTGC
GTGTTGGCGGTGTTGCTTTTAACTTTGGCACAACTAATAAAGGAGCACGG
TGTAGAAGAGCAATGGTCGTAAGACGAAGCGCCATGTCGACTGATAACT

BO14325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12250-PA 420 CG12250-RA 1..417 435..19 2010 99.2 Minus
CG12250-PB 441 CG12250-RB 1..175 435..261 875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-RA 1270 CG12250-RA 97..513 435..19 2040 99.3 Minus
ymp-RC 1247 CG12250-RC 97..512 435..20 2035 99.3 Minus
ymp-RD 1066 CG12250-RD 97..511 435..21 2030 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25592721..25592886 97..262 815 99.4 Plus
3R 32079331 3R 25592583..25592661 21..99 365 97.5 Plus
3R 32079331 3R 25608726..25608798 260..332 365 100 Plus
3R 32079331 3R 25608969..25609031 373..435 315 100 Plus
3R 32079331 3R 25608865..25608906 333..374 210 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:02:48 has no hits.

BO14325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:28 Download gff for BO14325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12250-PA 1..420 18..435 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:54 Download gff for BO14325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12250-PA 1..420 18..435 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:15 Download gff for BO14325.3prime
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 97..513 19..435 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:16 Download gff for BO14325.3prime
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 97..513 19..435 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:16 Download gff for BO14325.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25592576..25592658 11..96 93 <- Plus
3R 25592721..25592885 97..261 99 <- Plus
3R 25608728..25608798 262..332 100 <- Plus
3R 25608865..25608904 333..372 100 <- Plus
3R 25608969..25609031 373..435 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:15 Download gff for BO14325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21418443..21418607 97..261 99 <- Plus
arm_3R 21434450..21434520 262..332 100 <- Plus
arm_3R 21434587..21434626 333..372 100 <- Plus
arm_3R 21418298..21418380 11..96 93 <- Plus
arm_3R 21434691..21434753 373..435 100   Plus

BO14325.5prime Sequence

449 bp (448 high quality bases) assembled on 2006-05-29

> BO14325.5prime
GAAGTTATCAGTCGACATGGCGCTTCGTCTTACGACCATTGCTCTTCTAC
ACCGTGCTCCTTTATTAGTTGTGCCAAAGTTAAAAGCAACACCGCCAACA
CGCACTCTATTGTTAAGAAAGAATCTGGTACCGTTTTTAGATGATGATCC
TTGTGTGTTCTCAAAGAAAGCCGTCATGCATCATTGGGGGGTCCTTCCGA
TTCTGTTCATAACACTTGTTGGAGGTATACTTAAGGTTGGCGCCATGATC
CGCCTGGCATTGGTGAAGGACGATGTGTTCTTTACCAAGGATTCGGCATA
CTATATGTACTTGGAGACGCGCAAAGGTCCCTGGTACAAGCAAAAGAGTC
GTAAGTGGGGTGGTCGGGATGAGTATGATATGCCACCGGGATTGCTCCTG
GCCAACCAGGGCGATGTTTCTGGTCCTTCATTCGCAAGCTTTCTAGACC

BO14325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12250-PA 420 CG12250-RA 1..417 17..433 2010 99.2 Plus
CG12250-PB 441 CG12250-RB 1..175 17..191 875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-RA 1270 CG12250-RA 97..513 17..433 2040 99.3 Plus
ymp-RC 1247 CG12250-RC 97..512 17..432 2035 99.3 Plus
ymp-RD 1066 CG12250-RD 97..511 17..431 2030 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25592721..25592886 355..190 815 99.4 Minus
3R 32079331 3R 25592583..25592661 431..353 365 97.5 Minus
3R 32079331 3R 25608726..25608798 192..120 365 100 Minus
3R 32079331 3R 25608969..25609031 79..17 315 100 Minus
3R 32079331 3R 25608865..25608906 119..78 210 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:19:24 has no hits.

BO14325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:29 Download gff for BO14325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12250-PA 1..420 17..434 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:18:56 Download gff for BO14325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12250-PA 1..420 17..434 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:26:25 Download gff for BO14325.5prime
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 97..513 17..433 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:24 Download gff for BO14325.5prime
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 97..513 17..433 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:24 Download gff for BO14325.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25592576..25592658 356..441 93 <- Minus
3R 25592721..25592885 191..355 99 <- Minus
3R 25608728..25608798 120..190 100 <- Minus
3R 25608865..25608904 80..119 100 <- Minus
3R 25608969..25609031 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:26:25 Download gff for BO14325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21418298..21418380 356..441 93 <- Minus
arm_3R 21418443..21418607 191..355 99 <- Minus
arm_3R 21434450..21434520 120..190 100 <- Minus
arm_3R 21434587..21434626 80..119 100 <- Minus
arm_3R 21434691..21434753 17..79 100   Minus

BO14325.complete Sequence

451 bp assembled on 2006-10-11

GenBank Submission: FJ633088

> BO14325.complete
GAAGTTATCAGTCGACATGGCGCTTCGTCTTACGACCATTGCTCTTCTAC
ACCGTGCTCCTTTATTAGTTGTGCCAAAGTTAAAAGCAACACCGCCAACA
CGCACTCTATTGTTAAGAAAGAATCTGGTACCGTTTTTAGATGATGATCC
TTGTGTGTTCTCAAAGAAAGCCGTCATGCATCATTGGGGGGTCCTTCCGA
TTCTGTTCATAACACTTGTTGGAGGTATACTTAAGGTTGGCGCCATGATC
CGCCTGGCATTGGTGAAGGACGATGTGTTCTTTACCAAGGATTCGGCATA
CTATATGTACTTGGAGACGCGCAAAGGTCCCTGGTACAAGCAAAAGAGTC
GTAAGTGGGGTGGTCGGGATGAGTATGATATGCCACCGGGATTGCTCCTG
GCCAACCAGGGCGATGTTTCTGGTCCTTCATTCGCAAGCTTTCTAGACCA
T

BO14325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-RA 420 CG12250-PA 1..417 17..433 2040 99.3 Plus
ymp-RC 522 CG12250-PC 1..416 17..432 2035 99.3 Plus
ymp-RD 561 CG12250-PD 1..415 17..431 2030 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-RA 1270 CG12250-RA 97..513 17..433 2040 99.3 Plus
ymp-RC 1247 CG12250-RC 97..512 17..432 2035 99.3 Plus
ymp-RD 1066 CG12250-RD 97..511 17..431 2030 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25592721..25592886 355..190 815 99.4 Minus
3R 32079331 3R 25592583..25592661 431..353 365 97.5 Minus
3R 32079331 3R 25608726..25608798 192..120 365 100 Minus
3R 32079331 3R 25608969..25609031 79..17 315 100 Minus
3R 32079331 3R 25608865..25608906 119..78 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:26:28 has no hits.

BO14325.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:36 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 1..420 17..434 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:44 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 97..513 17..435 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:38 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 97..513 17..435 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:37 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 98..514 17..433 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:18 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 97..513 17..435 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:18 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25608728..25608798 120..190 100 <- Minus
3R 25608865..25608904 80..119 100 <- Minus
3R 25608969..25609031 17..79 100   Minus
3R 25592581..25592658 356..435 93 <- Minus
3R 25592721..25592885 191..355 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:38 Download gff for BO14325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21418303..21418380 356..435 93 <- Minus
arm_3R 21418443..21418607 191..355 99 <- Minus
arm_3R 21434450..21434520 120..190 100 <- Minus
arm_3R 21434587..21434626 80..119 100 <- Minus
arm_3R 21434691..21434753 17..79 100   Minus

BO14325.pep Sequence

Translation from 16 to 451

> BO14325.pep
MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK
KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE
TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSFASFLDH

BO14325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-PC 173 CG12250-PC 1..145 1..145 734 96.6 Plus
ymp-PA 139 CG12250-PA 1..139 1..139 733 100 Plus
ymp-PD 186 CG12250-PD 1..139 1..139 730 99.3 Plus
ymp-PB 146 CG12250-PB 1..140 1..139 438 63.6 Plus