Clone Sequence Records
BO14330.5prime Sequence
635 bp (634 high quality bases) assembled on 2006-05-29
> BO14330.5prime
GAAGTTATCAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCC
GTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACAT
CCAGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGC
CGGACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGG
CCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGG
GACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGAT
GCTGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCG
TCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAAT
GGAGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGA
CTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGC
CGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAG
CCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCC
CGGGTCCACCCTGCACATCGCAAGCTTTCTAGACC
BO14330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-PA | 606 | CG13004-RA | 1..603 | 17..619 | 2990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RB | 2234 | CG13004-RB | 906..1513 | 12..619 | 3010 | 99.7 | Plus |
CG13004-RD | 2321 | CG13004-RD | 998..1600 | 17..619 | 3000 | 99.8 | Plus |
CG13004-RC | 936 | CG13004-RC | 49..651 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16827676..16828074 | 415..17 | 1980 | 99.7 | Minus |
X | 23542271 | X | 16827402..16827605 | 619..416 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:09:31 has no hits.
BO14330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:40 Download gff for
BO14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:10 Download gff for
BO14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:58 Download gff for
BO14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1507 | 7..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:49 Download gff for
BO14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 902..1513 | 7..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:49 Download gff for
BO14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16827402..16827605 | 416..619 | 100 | <- | Minus |
X | 16827676..16828078 | 9..415 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:58 Download gff for
BO14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16721435..16721638 | 416..619 | 100 | <- | Minus |
arm_X | 16721709..16722111 | 9..415 | 98 | | Minus |
BO14330.3prime Sequence
635 bp (634 high quality bases) assembled on 2006-05-29
> BO14330.3prime
ATGGTCTAGAAAGCTTGCGATGTGCAGGGTGGACCCGGGCGGGGAGTTGG
ATCCACCAGCTCCTCGCTTGGCTGAGGTCTGTGCCGGCTCCAGATCCTTC
GACCGACCCCAGCTGATGACCAGGCATTCGTAGGTCGGCGGCGGTAGCTC
GAACTTGACCACGCTTTCGTAACTTGGCGGCAGTGAGTCGACAATGCGCA
GCACATCGTTCTGGGAGTTGATATGTGGCATGGCTCCATTGGTGGCCCTG
TTTCCCGCCTCGTCGATGGGTCCCGCCCAAATGCAGACGCCCATGCGGTG
CGTGACATAACCGCAGATGATCACGCTGATCACCAGCATCCCGATGCCCA
GGGCGAAAACCAACCAGCGAGACTCCACGCTATTGTCCCGCAGATTCTTC
TCCAGCTGCAGGGCGCAGAGGATAAGCACCGGCACGGCCACCATGGCCAC
CAACAGGTCGATAATGGGACGTTGGGTGCTGGGTCCGGCGTTCAGGGGAC
TACGTCCGGTTCCGGATCCATTGGGCGTTCCAGCTGGATGTTGGGAGCCA
AAGTTCTGGCTGCTGCTGTTCGGCGTCAAGGTGGAACGGGCCACCACAGT
GTTGTGGTTTTGTAGTACCATGTCGACTGATAACT
BO14330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-PA | 606 | CG13004-RA | 1..603 | 621..19 | 2990 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RB | 2234 | CG13004-RB | 906..1513 | 626..19 | 3010 | 99.7 | Minus |
CG13004-RD | 2321 | CG13004-RD | 998..1600 | 621..19 | 3000 | 99.8 | Minus |
CG13004-RC | 936 | CG13004-RC | 49..651 | 621..19 | 3000 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16827676..16828074 | 223..621 | 1980 | 99.7 | Plus |
X | 23542271 | X | 16827402..16827605 | 19..222 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:02:13 has no hits.
BO14330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:39 Download gff for
BO14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:09 Download gff for
BO14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:35:05 Download gff for
BO14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1507 | 19..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:15 Download gff for
BO14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 902..1513 | 19..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:15 Download gff for
BO14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16827402..16827605 | 19..222 | 100 | <- | Plus |
X | 16827676..16828078 | 223..629 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:35:05 Download gff for
BO14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16721435..16721638 | 19..222 | 100 | <- | Plus |
arm_X | 16721709..16722111 | 223..629 | 98 | | Plus |
BO14330.complete Sequence
637 bp assembled on 2006-10-11
GenBank Submission: FJ633089
> BO14330.complete
GAAGTTATCAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCC
GTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACAT
CCAGCTGGAACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGC
CGGACCCAGCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGG
CCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGG
GACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGAT
GCTGGTGATCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCG
TCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAAT
GGAGCCATGCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGA
CTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGC
CGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAG
CCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCC
CGGGTCCACCCTGCACATCGCAAGCTTTCTAGACCAT
BO14330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RD | 654 | CG13004-PD | 49..651 | 17..619 | 3000 | 99.8 | Plus |
CG13004-RB | 606 | CG13004-PB | 1..603 | 17..619 | 3000 | 99.8 | Plus |
CG13004-RC | 606 | CG13004-PC | 1..603 | 17..619 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-RB | 2234 | CG13004-RB | 906..1513 | 12..619 | 3010 | 99.7 | Plus |
CG13004-RD | 2321 | CG13004-RD | 998..1600 | 17..619 | 3000 | 99.8 | Plus |
CG13004-RC | 936 | CG13004-RC | 49..651 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16827676..16828074 | 415..17 | 1980 | 99.7 | Minus |
X | 23542271 | X | 16827402..16827605 | 619..416 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:56:04 has no hits.
BO14330.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:57 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:21 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1507 | 7..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:44 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 905..1507 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:59 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 896..1507 | 7..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:16 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13004-RB | 911..1513 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:16 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16827400..16827605 | 416..621 | 99 | <- | Minus |
X | 16827676..16828074 | 17..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:44 Download gff for
BO14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16721433..16721638 | 416..621 | 99 | <- | Minus |
arm_X | 16721709..16722107 | 17..415 | 99 | | Minus |
BO14330.pep Sequence
Translation from 16 to 637
> BO14330.pep
MVLQNHNTVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQ
RPIIDLLVAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISV
IICGYVTHRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPS
YESVVKFELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLH
IASFLDH
BO14330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13004-PB | 201 | CG13004-PB | 1..201 | 1..201 | 1049 | 100 | Plus |
CG13004-PC | 201 | CG13004-PC | 1..201 | 1..201 | 1049 | 100 | Plus |
CG13004-PA | 201 | CG13004-PA | 1..201 | 1..201 | 1049 | 100 | Plus |
CG13004-PD | 217 | CG13004-PD | 17..217 | 1..201 | 1049 | 100 | Plus |