Clone Sequence Records
BO14331.3prime Sequence
672 bp (650 high quality bases) assembled on 2006-05-29
> BO14331.3prime
ATGGTCTAGAAAGCTTGCGCTAGAAAGTTGCGAAGTCTCGATCGGAACTT
CCTTCTCAGTGGGTGCAATGGAGGACTTTTCCGGCAGGAACTCAATCGGG
CGTAACAGGTGCTTCTTGCAGCTATTCAACTGATCGCCGTTATCCTCATC
GTCGGAGGACACCTCACTGCCACACCTCATTCTAACGGGCAGCTTAACCG
CATCGATTGGCAAATGACCCAGGCAATCGAAACCCACATAGCCCAACTTA
TAGCTGGCCACAGCATTGGCGAAGTCCACGGCTTCGGCCAATCGCCTTTG
CCGCACAAAAGCGGCATAAATGAAGCCCGCCGTGAAGCAATCACTATCGC
CCACCCGATCGATGATCTTTTTCGGCTTGTGTGCTGGCACTTCGAAGTAC
TCCCCTTCCGTGGTCATACATCCTGCTCCCAGGCTGCTCCACGGCACAAT
GATGCAGGGTCTGCGAATTCTAATGTTCCTTGGCATGCGCAGTAGCGCAT
TGACACCCTCGCAGGCTTCCAGCGGTGACTTCCAGCCTCTGGACTCGGCT
ATATACTTGGTGACGAACACATAGTCGCACATGGCAATCAGATGCACGAC
CTGTTCGAAGGAATTGAAAATCTGCAACGATAACCACTATCCGATCCCGT
TCATCCCGCCCGTTGTTGTGAT
BO14331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-PA | 1137 | CG12289-RA | 521..1134 | 632..19 | 3070 | 100 | Minus |
CG12289-PB | 1011 | CG12289-RB | 395..1008 | 632..19 | 3070 | 100 | Minus |
CG12289-PA | 1137 | CG12289-RA | 482..521 | 672..633 | 200 | 100 | Minus |
CG12289-PB | 1011 | CG12289-RB | 356..395 | 672..633 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1395 | CG12289-RA | 660..1312 | 672..19 | 3245 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11457159..11457811 | 19..672 | 3220 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:55:50 has no hits.
BO14331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:41 Download gff for
BO14331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-PB | 356..1011 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:12 Download gff for
BO14331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-PB | 356..1011 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:44 Download gff for
BO14331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 660..1312 | 19..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:24 Download gff for
BO14331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 660..1312 | 19..672 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:24 Download gff for
BO14331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11457159..11457811 | 19..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:44 Download gff for
BO14331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11450259..11450911 | 19..672 | 99 | | Plus |
BO14331.5prime Sequence
744 bp (743 high quality bases) assembled on 2006-05-29
> BO14331.5prime
GAAGTTATCAGTCGACATGCTTCAGCGCAGCGGAAGATCCTCGAATGTTA
GTACGGCCCTGCGTCTGTTGGGCGCCAATGTGGAGTTGTTCGGTGTGCTC
ACCCGTAATCCCACCTATCGCATGATTCTGGATGATCTCGAGCAGCGGGG
CATTGATATTAGCCATTGTACATTCACGGACGCAAGTCCTCCCTTTTCCA
CAATTGTCCAAGATCGCTGGACGCGTCGTTGCACGGTGGTGTATTGCGAC
AAGTCATTTCCATATGTTACGGCAGCGGATTTTCGCAAACTGGATCTCGA
TCAATACGGCTGGGTGAATTTTGAGGCACGGAGTCCACGTGAAACTTGCG
ATATGATACGCCTAATCCTCGATCACAACAACGGGCGGGATGAACGGGAT
CGGATAGTGGTATCGTTGCAGATTTTCAATTCCTTCGAACAGGTCGTGCA
TCTGATTGCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGT
CCAGAGGCTGGAAGTCACCGCTGGAAGCCTGCGAGGGTGTCAATGCGCTA
CTGCGCATGCCAAGGAACATTAGAATTCGCAGACCCTGCATCATTGTGCC
GTGGAGCAGCCTGGGAGCAGGATGTATGACCACGGAAGGGGAGTACTTCG
AAGTGCCAGCACACAAGCCGAAAAAGATCATCGATCGGGTGGGCGATAGT
GATTGCTTCACGGCGGGCTTCATTTATGCCGCTTTTGTGCGGCA
BO14331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-PA | 1137 | CG12289-RA | 127..854 | 17..744 | 3590 | 99.7 | Plus |
CG12289-PB | 1011 | CG12289-RB | 1..728 | 17..744 | 3590 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1395 | CG12289-RA | 305..1032 | 17..744 | 3610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11457439..11458166 | 744..17 | 3610 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:31:41 has no hits.
BO14331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:42 Download gff for
BO14331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-PB | 1..727 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:13 Download gff for
BO14331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-PB | 1..727 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:21 Download gff for
BO14331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 303..1031 | 14..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:59 Download gff for
BO14331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 303..1031 | 14..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:59 Download gff for
BO14331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11457440..11458168 | 14..743 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:21 Download gff for
BO14331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11450540..11451268 | 14..743 | 99 | | Minus |
BO14331.complete Sequence
1042 bp assembled on 2006-10-11
GenBank Submission: FJ633090
> BO14331.complete
GAAGTTATCAGTCGACATGCTTCAGCGCAGCGGAAGATCCTCGAATGTTA
GTACGGCCCTGCGTCTGTTGGGCGCCAATGTGGAGTTGTTCGGTGTGCTC
ACCCGTAATCCCACCTATCGCATGATTCTGGATGATCTCGAGCAGCGGGG
CATTGATATTAGCCATTGTACATTCACGGACGCAAGTCCTCCCTTTTCCA
CAATTGTCCAAGATCGCTGGACGCGTCGTTGCACGGTGGTGTATTGCGAC
AAGTCATTTCCATATGTTACGGCAGCGGATTTTCGCAAACTGGATCTCGA
TCAATACGGCTGGGTGAATTTTGAGGCACGGAGTCCACGTGAAACTTGCG
ATATGATACGCCTAATCCTCGATCACAACAACGGGCGGGATGAACGGGAT
CGGATAGTGGTATCGTTGCAGATTTTCAATTCCTTCGAACAGGTCGTGCA
TCTGATTGCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGT
CCAGAGGCTGGAAGTCACCGCTGGAAGCCTGCGAGGGTGTCAATGCGCTA
CTGCGCATGCCAAGGAACATTAGAATTCGCAGACCCTGCATCATTGTGCC
GTGGAGCAGCCTGGGAGCAGGATGTATGACCACGGAAGGGGAGTACTTCG
AAGTGCCAGCACACAAGCCGAAAAAGATCATCGATCGGGTGGGCGATAGT
GATTGCTTCACGGCGGGCTTCATTTATGCCGCTTTTGTGCGGCAAAGGCG
ATTGGCCGAAGCCGTGGACTTCGCCAATGCTGTGGCCAGCTATAAGTTGG
GCTATGTGGGTTTCGATTGCCTGGGTCATTTGCCAATCGATGCGGTTAAG
CTGCCCGTTAGAATGAGGTGTGGCAGTGAGGTGTCCTCCGACGATGAGGA
TAACGGCGATCAGTTGAATAGCTGCAAGAAGCACCTGTTACGCCCGATTG
AGTTCCTGCCGGAAAAGTCCTCCATTGCACCCACTGAGAAGGAAGTTCCG
ATCGAGACTTCGCAACTTTCTAGCGCAAGCTTTCTAGACCAT
BO14331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1137 | CG12289-PA | 127..1134 | 17..1024 | 5010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-RA | 1395 | CG12289-RA | 305..1312 | 17..1024 | 5010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11457159..11458166 | 1024..17 | 5010 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:15 has no hits.
BO14331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:06 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RB | 1..1011 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:24 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RB | 135..1144 | 14..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:53 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 305..1312 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:07 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RB | 135..1144 | 14..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:37 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12289-RA | 305..1312 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:37 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11457157..11458166 | 17..1026 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:53 Download gff for
BO14331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11450257..11451266 | 17..1026 | 99 | | Minus |
BO14331.pep Sequence
Translation from 16 to 1042
> BO14331.pep
MLQRSGRSSNVSTALRLLGANVELFGVLTRNPTYRMILDDLEQRGIDISH
CTFTDASPPFSTIVQDRWTRRCTVVYCDKSFPYVTAADFRKLDLDQYGWV
NFEARSPRETCDMIRLILDHNNGRDERDRIVVSLQIFNSFEQVVHLIAMC
DYVFVTKYIAESRGWKSPLEACEGVNALLRMPRNIRIRRPCIIVPWSSLG
AGCMTTEGEYFEVPAHKPKKIIDRVGDSDCFTAGFIYAAFVRQRRLAEAV
DFANAVASYKLGYVGFDCLGHLPIDAVKLPVRMRCGSEVSSDDEDNGDQL
NSCKKHLLRPIEFLPEKSSIAPTEKEVPIETSQLSSASFLDH
BO14331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12289-PA | 378 | CG12289-PA | 43..378 | 1..336 | 1771 | 100 | Plus |
CG7328-PA | 306 | CG7328-PA | 39..304 | 3..274 | 577 | 42.7 | Plus |
CG7551-PB | 322 | CG7551-PB | 50..316 | 4..272 | 526 | 37.5 | Plus |
CG7335-PA | 372 | CG7335-PA | 65..367 | 3..277 | 292 | 26.6 | Plus |