Clone Sequence Records
BO14334.3prime Sequence
614 bp (613 high quality bases) assembled on 2006-05-29
> BO14334.3prime
ATGGTCTAGAAAGCTTGCATAGTTCTTTGACTTTTCATCGGCCAGAAGCA
GTTGCTTGAGGGCTGCGCCCCAGTGGTACTTCGAAGCTCCGTTTTGGGAC
ACAACTCGGTGGCACGGAATGAGGATAGCAAGCTCATTTTTGGCCACAGC
ACTGGCCACTGCTCTGACCGCCGTTGGACGACCCATCCGCTCGGCCAGTT
GGGAGTAAGTGCAGGTCTCCCCTCGTTTCATATGCACCAGAGCTCGCCAT
ACGGACAGCTGGAAGTCGGTTCCATAGATGGCAATGGGAATCGCCTGCGA
GTTTTCCTTGTCGCTTTCGAACAGTTTATCCGCCACCAACTTGACCGCAT
CATCGTCCTTCCAGAGTTCGGATTTTGGCCACCGCTCCTGGACTTCATTG
TAGGTACTCACATTGTCCTTAATCACGAAGTGAAGCACACCAATTGCGAC
TTGGTCTTTCGAATCGCCGGATATTGGGTTTATCACTCCCATCATCATCT
GCCCGAACTTGGTCGCCAGGAAACTGTATCGGATGGTCTTTGGCGGATCC
TTTAGTGGCACCAAACGAATCTGGGTGTTTTGGCCAATCCACATCGTCAT
GTCGACTGATAACT
BO14334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1303-PA | 585 | agt-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 693 | CG1303-RA | 79..660 | 600..19 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6659441..6660022 | 19..600 | 2910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:28:12 has no hits.
BO14334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:48 Download gff for
BO14334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:20 Download gff for
BO14334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1303-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:09 Download gff for
BO14334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..663 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:38:45 Download gff for
BO14334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..663 | 15..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:38:45 Download gff for
BO14334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6659445..6660022 | 23..600 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:09 Download gff for
BO14334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2485167..2485744 | 23..600 | 100 | | Plus |
BO14334.5prime Sequence
614 bp (613 high quality bases) assembled on 2006-05-29
> BO14334.5prime
GAAGTTATCAGTCGACATGACGATGTGGATTGGCCAAAACACCCAGATTC
GTTTGGTGCCACTAAAGGATCCGCCAAAGACCATCCGATACAGTTTCCTG
GCGACCAAGTTCGGGCAGATGATGATGGGAGTGATAAACCCAATATCCGG
CGATTCGAAAGACCAAGTCGCAATTGGTGTGCTTCACTTCGTGATTAAGG
ACAATGTGAGTACCTACAATGAAGTCCAGGAGCGGTGGCCAAAATCCGAA
CTCTGGAAGGACGATGATGCGGTCAAGTTGGTGGCGGATAAACTGTTCGA
AAGCGACAAGGAAAACTCGCAGGCGATTCCCATTGCCATCTATGGAACCG
ACTTCCAGCTGTCCGTATGGCGAGCTCTGGTGCATATGAAACGAGGGGAG
ACCTGCACTTACTCCCAACTGGCCGAGCGGATGGGTCGTCCAACGGCGGT
CAGAGCAGTGGCCAGTGCTGTGGCCAAAAATGAGCTTGCTATCCTCATTC
CGTGCCACCGAGTTGTGTCCCAAAACGGAGCTTCGAAGTACCACTGGGGC
GCAGCCCTCAAGCAACTGCTTCTGGCCGATGAAAAGTCAAAGAACTATGC
AAGCTTTCTAGACC
BO14334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1303-PA | 585 | agt-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 693 | CG1303-RA | 79..660 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6659441..6660022 | 598..17 | 2910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:13:08 has no hits.
BO14334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:49 Download gff for
BO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:21 Download gff for
BO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1303-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:22 Download gff for
BO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..663 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:24 Download gff for
BO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..663 | 17..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:24 Download gff for
BO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6659445..6660022 | 17..594 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:22 Download gff for
BO14334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2485167..2485744 | 17..594 | 100 | | Minus |
BO14334.complete Sequence
616 bp assembled on 2006-10-11
GenBank Submission: FJ633091
> BO14334.complete
GAAGTTATCAGTCGACATGACGATGTGGATTGGCCAAAACACCCAGATTC
GTTTGGTGCCACTAAAGGATCCGCCAAAGACCATCCGATACAGTTTCCTG
GCGACCAAGTTCGGGCAGATGATGATGGGAGTGATAAACCCAATATCCGG
CGATTCGAAAGACCAAGTCGCAATTGGTGTGCTTCACTTCGTGATTAAGG
ACAATGTGAGTACCTACAATGAAGTCCAGGAGCGGTGGCCAAAATCCGAA
CTCTGGAAGGACGATGATGCGGTCAAGTTGGTGGCGGATAAACTGTTCGA
AAGCGACAAGGAAAACTCGCAGGCGATTCCCATTGCCATCTATGGAACCG
ACTTCCAGCTGTCCGTATGGCGAGCTCTGGTGCATATGAAACGAGGGGAG
ACCTGCACTTACTCCCAACTGGCCGAGCGGATGGGTCGTCCAACGGCGGT
CAGAGCAGTGGCCAGTGCTGTGGCCAAAAATGAGCTTGCTATCCTCATTC
CGTGCCACCGAGTTGTGTCCCAAAACGGAGCTTCGAAGTACCACTGGGGC
GCAGCCCTCAAGCAACTGCTTCTGGCCGATGAAAAGTCAAAGAACTATGC
AAGCTTTCTAGACCAT
BO14334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 585 | CG1303-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-RA | 693 | CG1303-RA | 79..660 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6659441..6660022 | 598..17 | 2910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:30:19 has no hits.
BO14334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:12 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:20 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..663 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:52:08 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..660 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:12 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..663 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:57 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| agt-RA | 79..660 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:57 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6659439..6660022 | 17..600 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:52:08 Download gff for
BO14334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2485161..2485744 | 17..600 | 99 | | Minus |
BO14334.pep Sequence
Translation from 16 to 616
> BO14334.pep
MTMWIGQNTQIRLVPLKDPPKTIRYSFLATKFGQMMMGVINPISGDSKDQ
VAIGVLHFVIKDNVSTYNEVQERWPKSELWKDDDAVKLVADKLFESDKEN
SQAIPIAIYGTDFQLSVWRALVHMKRGETCTYSQLAERMGRPTAVRAVAS
AVAKNELAILIPCHRVVSQNGASKYHWGAALKQLLLADEKSKNYASFLDH
BO14334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| agt-PA | 194 | CG1303-PA | 1..194 | 1..194 | 1007 | 100 | Plus |
