Clone BO14335 Report

Search the DGRC for BO14335

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG31128-RA
Protein status:BO14335.pep: validated full length
Sequenced Size:532

Clone Sequence Records

BO14335.3prime Sequence

530 bp (529 high quality bases) assembled on 2006-05-29

> BO14335.3prime
ATGGTCTAGAAAGCTTGCAGACCATAGATAAGACCTCGACAGCAGGATGC
CCAGAATGCCCAGGGCAGCCAGGCAGCCAGCCGTGGGAGAGCACTTGACC
ACCCCGTTTGTATCCTCATCGCAGATGCAGGAGTGCAGACAAATTTCGCA
GGTGTCCCTCCAGCGCGATTGGTTTTGGTAGTAGATTCCGGCCAATTGCT
GGCAGCCCAATTTTGGTGACCACAGACAGCACCAGTCCAAAATCGGACCC
GTAACGTTGTACTTGTGTGGAACACACTCATCCAAATTGTACAATTTTTC
CGCTAAGCTGTGTGAAAACAATATCTTCTCTTTATCCGTTTTATTTTTAC
AAAATAGGCCAGAATGGGAGACGGTACATTTGCGCTGAATTTTATTGCAG
TTTGAGCATAGAGGCTCTGCTATCTTTCCCTCCTTTAGGTCCTTCAACGC
GCCACCTAGTCCTATATAGCATAAAGATACAATTATCCATGCTACCAGAC
ATTTTCCGGTGTGCATGTCGACTGATAACT

BO14335.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-PA 501 CG31128-RA 1..498 516..19 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 860 CG31128-RA 42..542 519..19 2505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24469438..24469710 519..247 1365 100 Minus
3R 32079331 3R 24469762..24469992 249..19 1155 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:36:15 has no hits.

BO14335.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:50 Download gff for BO14335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-PA 1..501 16..516 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:22 Download gff for BO14335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-PA 1..501 16..516 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:09:49 Download gff for BO14335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..542 19..528 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:17 Download gff for BO14335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..542 19..528 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:17 Download gff for BO14335.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24469763..24469992 19..248 100   Minus
3R 24469429..24469708 249..528 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:09:49 Download gff for BO14335.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20295151..20295430 249..528 98 -> Minus
arm_3R 20295485..20295714 19..248 100   Minus

BO14335.5prime Sequence

530 bp (529 high quality bases) assembled on 2006-05-29

> BO14335.5prime
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTGCAAGCTTTCTAGACC

BO14335.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-PA 501 CG31128-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 860 CG31128-RA 42..542 14..514 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24469438..24469710 14..286 1365 100 Plus
3R 32079331 3R 24469762..24469992 284..514 1155 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:49:10 has no hits.

BO14335.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:51 Download gff for BO14335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-PA 1..501 17..517 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:24 Download gff for BO14335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-PA 1..501 17..517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:12:12 Download gff for BO14335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..542 5..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:45 Download gff for BO14335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..542 5..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:45 Download gff for BO14335.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24469429..24469708 5..284 98 -> Plus
3R 24469763..24469992 285..514 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:12:12 Download gff for BO14335.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20295151..20295430 5..284 98 -> Plus
arm_3R 20295485..20295714 285..514 100   Plus

BO14335.complete Sequence

532 bp assembled on 2006-10-11

GenBank Submission: FJ633092

> BO14335.complete
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTGCAAGCTTTCTAGACCAT

BO14335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 501 CG31128-PA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-RA 860 CG31128-RA 42..542 14..514 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24469438..24469710 14..286 1365 100 Plus
3R 32079331 3R 24469762..24469992 284..514 1155 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:47:37 has no hits.

BO14335.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:13 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 1..501 17..517 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:26 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..542 5..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:01 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 45..542 17..516 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:15 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 33..542 5..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:44 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
CG31128-RA 45..542 17..516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:44 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24469441..24469708 17..284 100 -> Plus
3R 24469763..24469992 285..516 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:01 Download gff for BO14335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20295163..20295430 17..284 100 -> Plus
arm_3R 20295485..20295714 285..516 99   Plus

BO14335.pep Sequence

Translation from 16 to 532

> BO14335.pep
MHTGKCLVAWIIVSLCYIGLGGALKDLKEGKIAEPLCSNCNKIQRKCTVS
HSGLFCKNKTDKEKILFSHSLAEKLYNLDECVPHKYNVTGPILDWCCLWS
PKLGCQQLAGIYYQNQSRWRDTCEICLHSCICDEDTNGVVKCSPTAGCLA
ALGILGILLSRSYLWSASFLDH

BO14335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31128-PA 166 CG31128-PA 1..166 1..166 928 100 Plus