Clone Sequence Records
BO14335.3prime Sequence
530 bp (529 high quality bases) assembled on 2006-05-29
> BO14335.3prime
ATGGTCTAGAAAGCTTGCAGACCATAGATAAGACCTCGACAGCAGGATGC
CCAGAATGCCCAGGGCAGCCAGGCAGCCAGCCGTGGGAGAGCACTTGACC
ACCCCGTTTGTATCCTCATCGCAGATGCAGGAGTGCAGACAAATTTCGCA
GGTGTCCCTCCAGCGCGATTGGTTTTGGTAGTAGATTCCGGCCAATTGCT
GGCAGCCCAATTTTGGTGACCACAGACAGCACCAGTCCAAAATCGGACCC
GTAACGTTGTACTTGTGTGGAACACACTCATCCAAATTGTACAATTTTTC
CGCTAAGCTGTGTGAAAACAATATCTTCTCTTTATCCGTTTTATTTTTAC
AAAATAGGCCAGAATGGGAGACGGTACATTTGCGCTGAATTTTATTGCAG
TTTGAGCATAGAGGCTCTGCTATCTTTCCCTCCTTTAGGTCCTTCAACGC
GCCACCTAGTCCTATATAGCATAAAGATACAATTATCCATGCTACCAGAC
ATTTTCCGGTGTGCATGTCGACTGATAACT
BO14335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-PA | 501 | CG31128-RA | 1..498 | 516..19 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 860 | CG31128-RA | 42..542 | 519..19 | 2505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24469438..24469710 | 519..247 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 24469762..24469992 | 249..19 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:36:15 has no hits.
BO14335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:50 Download gff for
BO14335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-PA | 1..501 | 16..516 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:22 Download gff for
BO14335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-PA | 1..501 | 16..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:09:49 Download gff for
BO14335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..542 | 19..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:17 Download gff for
BO14335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..542 | 19..528 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:17 Download gff for
BO14335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24469763..24469992 | 19..248 | 100 | | Minus |
3R | 24469429..24469708 | 249..528 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:09:49 Download gff for
BO14335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20295151..20295430 | 249..528 | 98 | -> | Minus |
arm_3R | 20295485..20295714 | 19..248 | 100 | | Minus |
BO14335.5prime Sequence
530 bp (529 high quality bases) assembled on 2006-05-29
> BO14335.5prime
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTGCAAGCTTTCTAGACC
BO14335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-PA | 501 | CG31128-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 860 | CG31128-RA | 42..542 | 14..514 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24469438..24469710 | 14..286 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 24469762..24469992 | 284..514 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:49:10 has no hits.
BO14335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:51 Download gff for
BO14335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-PA | 1..501 | 17..517 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:24 Download gff for
BO14335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-PA | 1..501 | 17..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:12:12 Download gff for
BO14335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..542 | 5..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:45 Download gff for
BO14335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..542 | 5..514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:45 Download gff for
BO14335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24469429..24469708 | 5..284 | 98 | -> | Plus |
3R | 24469763..24469992 | 285..514 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:12:12 Download gff for
BO14335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20295151..20295430 | 5..284 | 98 | -> | Plus |
arm_3R | 20295485..20295714 | 285..514 | 100 | | Plus |
BO14335.complete Sequence
532 bp assembled on 2006-10-11
GenBank Submission: FJ633092
> BO14335.complete
GAAGTTATCAGTCGACATGCACACCGGAAAATGTCTGGTAGCATGGATAA
TTGTATCTTTATGCTATATAGGACTAGGTGGCGCGTTGAAGGACCTAAAG
GAGGGAAAGATAGCAGAGCCTCTATGCTCAAACTGCAATAAAATTCAGCG
CAAATGTACCGTCTCCCATTCTGGCCTATTTTGTAAAAATAAAACGGATA
AAGAGAAGATATTGTTTTCACACAGCTTAGCGGAAAAATTGTACAATTTG
GATGAGTGTGTTCCACACAAGTACAACGTTACGGGTCCGATTTTGGACTG
GTGCTGTCTGTGGTCACCAAAATTGGGCTGCCAGCAATTGGCCGGAATCT
ACTACCAAAACCAATCGCGCTGGAGGGACACCTGCGAAATTTGTCTGCAC
TCCTGCATCTGCGATGAGGATACAAACGGGGTGGTCAAGTGCTCTCCCAC
GGCTGGCTGCCTGGCTGCCCTGGGCATTCTGGGCATCCTGCTGTCGAGGT
CTTATCTATGGTCTGCAAGCTTTCTAGACCAT
BO14335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 501 | CG31128-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-RA | 860 | CG31128-RA | 42..542 | 14..514 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24469438..24469710 | 14..286 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 24469762..24469992 | 284..514 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:47:37 has no hits.
BO14335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:40:13 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 1..501 | 17..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:26 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..542 | 5..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:01 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 45..542 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:40:15 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 33..542 | 5..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:44 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31128-RA | 45..542 | 17..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:44 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24469441..24469708 | 17..284 | 100 | -> | Plus |
3R | 24469763..24469992 | 285..516 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:01 Download gff for
BO14335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20295163..20295430 | 17..284 | 100 | -> | Plus |
arm_3R | 20295485..20295714 | 285..516 | 99 | | Plus |
BO14335.pep Sequence
Translation from 16 to 532
> BO14335.pep
MHTGKCLVAWIIVSLCYIGLGGALKDLKEGKIAEPLCSNCNKIQRKCTVS
HSGLFCKNKTDKEKILFSHSLAEKLYNLDECVPHKYNVTGPILDWCCLWS
PKLGCQQLAGIYYQNQSRWRDTCEICLHSCICDEDTNGVVKCSPTAGCLA
ALGILGILLSRSYLWSASFLDH
BO14335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31128-PA | 166 | CG31128-PA | 1..166 | 1..166 | 928 | 100 | Plus |