Clone Sequence Records
BO14338.complete Sequence
967 bp assembled on 2009-07-30
GenBank Submission: KX796505
> BO14338.complete
GAAGTTATCAGTCGACATGCCTAACGACGCGATAATCTATTCTGGTCCCT
ACGAATTGGGACGCCTTCGCCGGCGTCGTGATATGCGGGTGGCGGAGTAC
CTCTACAGGCGTTCCATTCGCACACGCAATGCGGATCCCGAGATGACCGT
GTGCCGTTTTATCAAACTGCTGCTCTACTTCATCGGATTCTTTTTCGTTC
TAGGCGTATTCACAACCGGATTGGCCCTCGTGATGATTGCGAATCATATA
TATCCGGATAGGCCGGGATGCAAAAAGTTCCCCGGACTAGCAACCGCGCC
CGGACACCATGTCGGCGATCAGAAGCAAATTATGTGGAGCCCTAATAACA
TTAAGGATGTGGCTAACATACAACGCGCGATAATGCGAACGGTGAAACGA
TACGGTCTCGAAGGCCCGAAGCGCCTGATGGGCTGTAACATAGACGACAG
TTGGGGCTATATGTCCGGCACGCCGTGCATTCTAATAAAGATCACCCAGG
CATTGGGCTTCCAGGCGGTAACCTACGATGACGCCCTAACGCTGCCCGAG
TACGCTCCGGATGAGCTATTCGACTATGTGGTGGGCCTGGGCTCGGAGGA
GCGCTTCAACCGCATCTGGGTGTCCTGCCAGGTTATTGAGCCAAGAGTGG
ACATTCAGTTCGACTACCATCCGGTTCGCTTCTTCGATGCCGAAGAGCTC
TTCACCTCCGGCAATGTCTTTCTCAACGAGTCTTCGGACGACGACGGACC
TACTTACAAGGAGGATCCCCGCCTCAGGCGCATCATCAGTGTTCGGTTGA
GCAACATTCCGATCAACGAGGACATCCAAATCCACTGCAAGGCGTGGGCT
AAGAACATACCGCTCCATATGGTAACGGTCAAGATGCTGGTGCGTCTGAC
GGCACCAGTTCATCCAACCACTCCATTGGTGCTGGACGAGTGGTACGAGG
CAAGCTTTCTAGACCAT
BO14338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 936 | CG5250-PA | 1..933 | 17..949 | 4590 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 1060 | CG5250-RA | 49..982 | 16..949 | 4595 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19228295..19229228 | 949..16 | 4595 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:26:25 has no hits.
BO14338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:28 Download gff for
BO14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 50..982 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:37 Download gff for
BO14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 50..982 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:36 Download gff for
BO14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 50..982 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:36 Download gff for
BO14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19228292..19229227 | 17..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:37 Download gff for
BO14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15054014..15054949 | 17..951 | 99 | | Minus |
BO14338.3prime Sequence
798 bp (698 high quality bases) assembled on 2006-05-29
> BO14338.3prime
ATGGTCTAGAAAGCTTGCCTCGTACCACTCGTCCAGCACCAATGGAGTGG
TTGGATGAACTGGTGCCGTCAGACGCACCAGCATCTTGACCGTTACCATA
TGGAGCGGTATGTTCTTAGCCCACGCCTTGCAGTGGATTTGGATGTCCTC
GTTGATCGGAATGTTGCTCAACCGAACACTGATGATGCGCCTGAGGCGGG
GATCCTCCTTGTAAGTAGGTCCGTCGTCGTCCGAAGACTCGTTGAGAAAG
ACATTGCCGGAGGTGAAGAGCTCTTCGGCATCGAAGAAGCGAACCGGATG
GTAGTCGAACTGAATGTCCACTCTTGGCTCAATAACCTGGCAGGACACCC
AGATGCGGTTGAAGCGCTCCTCCGAGCCCAGGCCCACCACATAGTCGAAT
AGCTCATCCGGAGCGTACTCGGGCAGCGTTAGGGCGTCATCGTAGGTTAC
CGCCTGGAAGCCCAATGCCTGGGTGATCTTTATTAGAATGCACGGCGTGC
CGGACATATAGCCCCAACTGTCGTCTATGTTACAGCCCATCAGGCGCTTC
GGGCCTTCGAGACCGTATCGTTTCACCGTTCGCATTATCGCGCGTTGTAT
GTTAGCCACATCCTTAATGTTATTAGGGCTCCACATAATTTGCTTCTGAT
CGCCGACATGGTGTCCGGGCGCGGTTGCTTATCCGGGGAACTTTTTGCAT
CCCGGCCTATCCGGATATATATGATTCGCAATCATCACGAGGGCCAATCC
GGTTGTGAATACGCCTAGAACGAAAAAGAATCCGATGAAGTATAGCAG
BO14338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-PA | 936 | CG5250-RA | 154..933 | 798..19 | 3725 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 1060 | CG5250-RA | 203..982 | 798..19 | 3795 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19228295..19229074 | 19..798 | 3795 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:30:15 has no hits.
BO14338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:56 Download gff for
BO14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-PA | 154..936 | 16..798 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:31 Download gff for
BO14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-PA | 154..936 | 16..798 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:21 Download gff for
BO14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 203..982 | 19..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:38:58 Download gff for
BO14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 203..982 | 19..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:38:58 Download gff for
BO14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19228295..19229074 | 19..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:21 Download gff for
BO14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15054017..15054796 | 19..798 | 99 | | Plus |
BO14338.5prime Sequence
756 bp (754 high quality bases) assembled on 2006-05-29
> BO14338.5prime
GAAGTTATCACTCGACATGCCTAACGACGCGATAATCTATTCTGGTCCCT
ACGAATTGGGACGCCTTCGCCGGCGTCGTGATATGCGGGTGGCGGAGTAC
CTCTACAGGCGTTCCATTCGCACACGCAATGCGGATCCCGAGATGACCGT
GTGCCGTTTTATCAAACTGCTGCTCTACTTCATCGGATTCTTTTTCGTTC
TAGGCGTATTCACAACCGGATTGGCCCTCGTGATGATTGCGAATCATATA
TATCCGGATAGGCCGGGATGCAAAAAGTTCCCCGGACTAGCAACCGCGCC
CGGACACCATGTCGGCGATCAGAAGCAAATTATGTGGAGCCCTAATAACA
TTAAGGATGTGGCTAACATACAACGCGCGATAATGCGAACGGTGAAACGA
TACGGTCTCGAAGGCCCGAAGCGCCTGATGGGCTGTAACATAGACGACAG
TTGGGGCTATATGTCCGGCACGCCGTGCATTCTAATAAAGATCACCCAGG
CATTGGGCTTCCAGGCGGTAACCTACGATGACGCCCTAACGCTGCCCGAG
TACGCTCCGGATGAGCTATTCGACTATGTGGTGGGCCTGGGCTCGGAGGA
GCGCTTCAACCGCATCTGGGTGTCCTGCCAGGTTATTGAGCCAAGAGTGG
ACATTCAGTTCGACTACCATCCGGTTCGCTTCTTCGATGCCGAAGAGCTC
TTCACCTCCGGCAATGTCTTTCTCAACGAGTCTTCGGACGACGACGGACC
TACTTA
BO14338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-PA | 936 | CG5250-RA | 1..740 | 17..756 | 3575 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-RA | 1060 | CG5250-RA | 49..789 | 16..756 | 3630 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19228488..19229228 | 756..16 | 3630 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:22:53 has no hits.
BO14338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:24:57 Download gff for
BO14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-PA | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:32 Download gff for
BO14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-PA | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:57 Download gff for
BO14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 40..788 | 5..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:44 Download gff for
BO14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5250-RA | 40..788 | 5..755 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:44 Download gff for
BO14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19228489..19229237 | 5..755 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:57 Download gff for
BO14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15054211..15054959 | 5..755 | 98 | | Minus |
BO14338.pep Sequence
Translation from 16 to 967
> BO14338.pep
MPNDAIIYSGPYELGRLRRRRDMRVAEYLYRRSIRTRNADPEMTVCRFIK
LLLYFIGFFFVLGVFTTGLALVMIANHIYPDRPGCKKFPGLATAPGHHVG
DQKQIMWSPNNIKDVANIQRAIMRTVKRYGLEGPKRLMGCNIDDSWGYMS
GTPCILIKITQALGFQAVTYDDALTLPEYAPDELFDYVVGLGSEERFNRI
WVSCQVIEPRVDIQFDYHPVRFFDAEELFTSGNVFLNESSDDDGPTYKED
PRLRRIISVRLSNIPINEDIQIHCKAWAKNIPLHMVTVKMLVRLTAPVHP
TTPLVLDEWYEASFLDH
BO14338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5250-PA | 311 | CG5250-PA | 1..311 | 1..311 | 1665 | 100 | Plus |
| CG11703-PA | 353 | CG11703-PA | 1..260 | 1..283 | 191 | 23.4 | Plus |
| CG33310-PB | 876 | CG33310-PB | 659..841 | 103..281 | 187 | 25.3 | Plus |
