Clone Sequence Records
BO14342.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-29
> BO14342.3prime
ATGGTCTAGAAAGCTTGCTTGCTTTGGCGGCACATTATCCTTGAACAAAC
CCACAACATTGCCGGGAGGATTGTAGTTGCAAACCACCCAAGTTCTATCC
GCTTTTCGGGCCACACCCGAACCCATTTCCACCGACGACTTCCAAATGAG
CTGAGTAAAGTGTCCAGCGGTGGGCACAAACTGCGCCTTGTTGAAATCGT
AGCTATTGATTTCCCGATACCACATTTCCACCGGCAGATCACCGGTCACA
TCCATTCCACCGGAGAGGAAAATGTTTTCGCCATACTTGGGATTGGGTCT
GTGCGCCATTGTGTTCTGATCGCGGAGATGATTGGCCCATTCCTGAGCCA
GCTTATTTAGTGCAGCATTAATGGTCACCGCGGGACAGCCGTGCATTGCC
CGATATTTATTGGTGGTATTGAAGACCTCCTTCAGGAAGAGCTCATTGTT
GCCCTTGGTATCCTGACCCCTGGGACCTGGAGGGCGCTCGTGGGTTTTGG
GAATGGGCGCTACGTTTCTCTTCGCCATGTCGACTGATAACT
BO14342.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-PA | 513 | CG4270-RA | 1..510 | 528..19 | 2500 | 99.6 | Minus |
CG4270-PB | 429 | CG4270-RB | 1..425 | 528..104 | 2075 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 686 | CG4270-RA | 117..626 | 528..19 | 2520 | 99.6 | Minus |
CG4270-RB | 584 | CG4270-RB | 117..541 | 528..104 | 2095 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2263816..2264042 | 330..104 | 1120 | 99.6 | Minus |
2L | 23513712 | 2L | 2263558..2263755 | 528..331 | 975 | 99.5 | Minus |
2L | 23513712 | 2L | 2264097..2264181 | 103..19 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:56:55 has no hits.
BO14342.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:05 Download gff for
BO14342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:43 Download gff for
BO14342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:24 Download gff for
BO14342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 12..535 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:02 Download gff for
BO14342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 12..535 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:02 Download gff for
BO14342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2263552..2263755 | 331..535 | 97 | -> | Minus |
2L | 2263816..2264042 | 104..330 | 99 | -> | Minus |
2L | 2264097..2264186 | 12..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:24 Download gff for
BO14342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2263552..2263755 | 331..535 | 97 | -> | Minus |
arm_2L | 2263816..2264042 | 104..330 | 99 | -> | Minus |
arm_2L | 2264097..2264186 | 12..103 | 96 | | Minus |
BO14342.5prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-29
> BO14342.5prime
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAAGCAAGCTTTCTAGACC
BO14342.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-PA | 513 | CG4270-RA | 1..510 | 17..526 | 2500 | 99.6 | Plus |
CG4270-PB | 429 | CG4270-RB | 1..425 | 17..441 | 2075 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 686 | CG4270-RA | 117..626 | 17..526 | 2520 | 99.6 | Plus |
CG4270-RB | 584 | CG4270-RB | 117..541 | 17..441 | 2095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2263816..2264042 | 215..441 | 1120 | 99.6 | Plus |
2L | 23513712 | 2L | 2263558..2263755 | 17..214 | 975 | 99.5 | Plus |
2L | 23513712 | 2L | 2264097..2264181 | 442..526 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:49:12 has no hits.
BO14342.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:06 Download gff for
BO14342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:44 Download gff for
BO14342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:29 Download gff for
BO14342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 10..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:29 Download gff for
BO14342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 111..631 | 10..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:29 Download gff for
BO14342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2263552..2263755 | 10..214 | 97 | -> | Plus |
2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
2L | 2264097..2264186 | 442..533 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:29 Download gff for
BO14342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2264097..2264186 | 442..533 | 96 | | Plus |
arm_2L | 2263552..2263755 | 10..214 | 97 | -> | Plus |
arm_2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
BO14342.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ633093
> BO14342.complete
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAAGCAAGCTTTCTAGACCAT
BO14342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 513 | CG4270-PA | 1..510 | 17..526 | 2520 | 99.6 | Plus |
CG4270-RB | 429 | CG4270-PB | 1..425 | 17..441 | 2095 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-RA | 686 | CG4270-RA | 117..626 | 17..526 | 2520 | 99.6 | Plus |
CG4270-RB | 584 | CG4270-RB | 117..541 | 17..441 | 2095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2263816..2264042 | 215..441 | 1120 | 99.6 | Plus |
2L | 23513712 | 2L | 2263558..2263755 | 17..214 | 975 | 99.5 | Plus |
2L | 23513712 | 2L | 2264097..2264181 | 442..526 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:57:00 has no hits.
BO14342.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:22 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:46 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 89..609 | 10..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:08 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 117..626 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:23 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 89..609 | 10..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:31 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4270-RA | 117..626 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:31 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2264097..2264181 | 442..528 | 97 | | Plus |
2L | 2263558..2263755 | 17..214 | 99 | -> | Plus |
2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:08 Download gff for
BO14342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2263558..2263755 | 17..214 | 99 | -> | Plus |
arm_2L | 2263816..2264042 | 215..441 | 99 | -> | Plus |
arm_2L | 2264097..2264181 | 442..528 | 97 | | Plus |
BO14342.pep Sequence
Translation from 16 to 544
> BO14342.pep
MAKRNVAPIPKTHERPPGPRGQDTKGNNELFLKEVFNTTNKYRAMHGCPA
VTINAALNKLAQEWANHLRDQNTMAHRPNPKYGENIFLSGGMDVTGDLPV
EMWYREINSYDFNKAQFVPTAGHFTQLIWKSSVEMGSGVARKADRTWVVC
NYNPPGNVVGLFKDNVPPKQASFLDH
BO14342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4270-PA | 170 | CG4270-PA | 1..170 | 1..170 | 934 | 100 | Plus |
CG4270-PB | 142 | CG4270-PB | 1..142 | 1..142 | 772 | 100 | Plus |
CG16995-PA | 146 | CG16995-PA | 6..143 | 31..168 | 374 | 48.6 | Plus |
CG34049-PB | 306 | CG34049-PB | 149..284 | 35..170 | 316 | 44.1 | Plus |
CG31482-PA | 195 | CG31482-PA | 28..159 | 37..168 | 236 | 39.3 | Plus |