Clone BO14342 Report

Search the DGRC for BO14342

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4270-RA
Protein status:BO14342.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO14342.3prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-29

> BO14342.3prime
ATGGTCTAGAAAGCTTGCTTGCTTTGGCGGCACATTATCCTTGAACAAAC
CCACAACATTGCCGGGAGGATTGTAGTTGCAAACCACCCAAGTTCTATCC
GCTTTTCGGGCCACACCCGAACCCATTTCCACCGACGACTTCCAAATGAG
CTGAGTAAAGTGTCCAGCGGTGGGCACAAACTGCGCCTTGTTGAAATCGT
AGCTATTGATTTCCCGATACCACATTTCCACCGGCAGATCACCGGTCACA
TCCATTCCACCGGAGAGGAAAATGTTTTCGCCATACTTGGGATTGGGTCT
GTGCGCCATTGTGTTCTGATCGCGGAGATGATTGGCCCATTCCTGAGCCA
GCTTATTTAGTGCAGCATTAATGGTCACCGCGGGACAGCCGTGCATTGCC
CGATATTTATTGGTGGTATTGAAGACCTCCTTCAGGAAGAGCTCATTGTT
GCCCTTGGTATCCTGACCCCTGGGACCTGGAGGGCGCTCGTGGGTTTTGG
GAATGGGCGCTACGTTTCTCTTCGCCATGTCGACTGATAACT

BO14342.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-PA 513 CG4270-RA 1..510 528..19 2500 99.6 Minus
CG4270-PB 429 CG4270-RB 1..425 528..104 2075 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 686 CG4270-RA 117..626 528..19 2520 99.6 Minus
CG4270-RB 584 CG4270-RB 117..541 528..104 2095 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2263816..2264042 330..104 1120 99.6 Minus
2L 23513712 2L 2263558..2263755 528..331 975 99.5 Minus
2L 23513712 2L 2264097..2264181 103..19 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:56:55 has no hits.

BO14342.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:05 Download gff for BO14342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:43 Download gff for BO14342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:24 Download gff for BO14342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 12..535 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:02 Download gff for BO14342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 12..535 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:02 Download gff for BO14342.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2263552..2263755 331..535 97 -> Minus
2L 2263816..2264042 104..330 99 -> Minus
2L 2264097..2264186 12..103 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:24 Download gff for BO14342.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2263552..2263755 331..535 97 -> Minus
arm_2L 2263816..2264042 104..330 99 -> Minus
arm_2L 2264097..2264186 12..103 96   Minus

BO14342.5prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-29

> BO14342.5prime
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAAGCAAGCTTTCTAGACC

BO14342.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-PA 513 CG4270-RA 1..510 17..526 2500 99.6 Plus
CG4270-PB 429 CG4270-RB 1..425 17..441 2075 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 686 CG4270-RA 117..626 17..526 2520 99.6 Plus
CG4270-RB 584 CG4270-RB 117..541 17..441 2095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2263816..2264042 215..441 1120 99.6 Plus
2L 23513712 2L 2263558..2263755 17..214 975 99.5 Plus
2L 23513712 2L 2264097..2264181 442..526 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:49:12 has no hits.

BO14342.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:06 Download gff for BO14342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:44 Download gff for BO14342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:29 Download gff for BO14342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 10..533 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:29 Download gff for BO14342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 111..631 10..533 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:29 Download gff for BO14342.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2263552..2263755 10..214 97 -> Plus
2L 2263816..2264042 215..441 99 -> Plus
2L 2264097..2264186 442..533 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:29 Download gff for BO14342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2264097..2264186 442..533 96   Plus
arm_2L 2263552..2263755 10..214 97 -> Plus
arm_2L 2263816..2264042 215..441 99 -> Plus

BO14342.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ633093

> BO14342.complete
GAAGTTATCAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAA
CCCACGAGCGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAAT
GAGCTCTTCCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAAT
GCACGGCTGTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTC
AGGAATGGGCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCC
AATCCCAAGTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGAC
CGGTGATCTGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATT
TCAACAAGGCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATT
TGGAAGTCGTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAG
AACTTGGGTGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGT
TCAAGGATAATGTGCCGCCAAAGCAAGCAAGCTTTCTAGACCAT

BO14342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 513 CG4270-PA 1..510 17..526 2520 99.6 Plus
CG4270-RB 429 CG4270-PB 1..425 17..441 2095 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-RA 686 CG4270-RA 117..626 17..526 2520 99.6 Plus
CG4270-RB 584 CG4270-RB 117..541 17..441 2095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2263816..2264042 215..441 1120 99.6 Plus
2L 23513712 2L 2263558..2263755 17..214 975 99.5 Plus
2L 23513712 2L 2264097..2264181 442..526 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:57:00 has no hits.

BO14342.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:22 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:46 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 89..609 10..533 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:08 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 117..626 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:23 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 89..609 10..533 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:31 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
CG4270-RA 117..626 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:31 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2264097..2264181 442..528 97   Plus
2L 2263558..2263755 17..214 99 -> Plus
2L 2263816..2264042 215..441 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:08 Download gff for BO14342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2263558..2263755 17..214 99 -> Plus
arm_2L 2263816..2264042 215..441 99 -> Plus
arm_2L 2264097..2264181 442..528 97   Plus

BO14342.pep Sequence

Translation from 16 to 544

> BO14342.pep
MAKRNVAPIPKTHERPPGPRGQDTKGNNELFLKEVFNTTNKYRAMHGCPA
VTINAALNKLAQEWANHLRDQNTMAHRPNPKYGENIFLSGGMDVTGDLPV
EMWYREINSYDFNKAQFVPTAGHFTQLIWKSSVEMGSGVARKADRTWVVC
NYNPPGNVVGLFKDNVPPKQASFLDH

BO14342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4270-PA 170 CG4270-PA 1..170 1..170 934 100 Plus
CG4270-PB 142 CG4270-PB 1..142 1..142 772 100 Plus
CG16995-PA 146 CG16995-PA 6..143 31..168 374 48.6 Plus
CG34049-PB 306 CG34049-PB 149..284 35..170 316 44.1 Plus
CG31482-PA 195 CG31482-PA 28..159 37..168 236 39.3 Plus