Clone Sequence Records
BO14343.3prime Sequence
389 bp (388 high quality bases) assembled on 2006-05-29
> BO14343.3prime
ATGGTCTAGAAAGCTTGCGGACTGCTTCTCCTTTCGCTTCCCCAGTGGCT
CTCGTCCAAAGCCATATTTCTCGCCATACAGCGGACTTATCCCTGCCAGC
AATTGATGGGCGGACTCATAGACAGTGTCACAATTGGCCACCTCATCGGC
CACATCATCGAACTCATAGGACACGATCCGATAGCCAGCGCGACTTAGTT
GCACACAATAGATGACCTGCTCCAAGGTGCGAATATTGATGTAGGCCACG
CCGCGACAATGGGGTAGAAATTCGGCCACGATCAAGTGGTCCGCAAAGTC
CTGGCACGAGTCCACCATCCTTTGCGCCTCTCGAAGCGCATGGAAGTCGT
TTTCATCACTCTGGACGAGAGCCATGTCGACTGATAACT
BO14343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-PB | 360 | CG14505-RB | 1..357 | 375..19 | 1685 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-RB | 956 | CG14505-RB | 26..382 | 375..19 | 1725 | 98.9 | Minus |
| CG14505-RC | 1033 | CG14505-RC | 26..382 | 375..19 | 1725 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18303596..18303952 | 19..375 | 1725 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:40:55 has no hits.
BO14343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:07 Download gff for
BO14343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-PA | 1..360 | 16..375 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:45 Download gff for
BO14343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-PB | 1..360 | 16..375 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:54:26 Download gff for
BO14343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RC | 17..382 | 19..387 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:44 Download gff for
BO14343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RC | 17..382 | 19..387 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:44 Download gff for
BO14343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18303596..18303960 | 19..387 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:54:26 Download gff for
BO14343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14191101..14191465 | 19..387 | 97 | | Plus |
BO14343.5prime Sequence
389 bp (388 high quality bases) assembled on 2006-05-29
> BO14343.5prime
GAAGTTATCAGTCGACATGGCTCTCGTCCAGAGTGATGAAAACGACTTCC
ATGCGCTTCGAGAGGCGCAAAGGATGGTGGACTCGTGCCAGGACTTTGCG
GACCACTTGATCGTGGCCGAATTTCTACCCCATTGTCGCGGCGTGGCCTA
CATCAATATTCGCACCTTGGAGCAGGTCATCTATTGTGTGCAACTAAGTC
GCGCTGGCTATCGGATCGTGTCCTATGAGTTCGATGATGTGGCCGATGAG
GTGGCCAATTGTGACACTGTCTATGAGTCCGCCCATCAATTGCTGGCAGG
GATAAGTCCGCTGTATGGCGAGAAATATGGCTTTGGACGAGAGCCACTGG
GGAAGCGAAAGGAGAAGCAGTCCGCAAGCTTTCTAGACC
BO14343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-PB | 360 | CG14505-RB | 1..357 | 17..373 | 1685 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-RB | 956 | CG14505-RB | 26..382 | 17..373 | 1725 | 98.9 | Plus |
| CG14505-RC | 1033 | CG14505-RC | 26..382 | 17..373 | 1725 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18303596..18303952 | 373..17 | 1725 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:01:30 has no hits.
BO14343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:08 Download gff for
BO14343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-PA | 1..360 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:47 Download gff for
BO14343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-PB | 1..360 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:53:16 Download gff for
BO14343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RC | 17..382 | 5..373 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:11 Download gff for
BO14343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RC | 17..382 | 5..373 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:11 Download gff for
BO14343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18303596..18303960 | 5..373 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:53:16 Download gff for
BO14343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14191101..14191465 | 5..373 | 97 | | Minus |
BO14343.complete Sequence
391 bp assembled on 2006-10-11
GenBank Submission: FJ633094
> BO14343.complete
GAAGTTATCAGTCGACATGGCTCTCGTCCAGAGTGATGAAAACGACTTCC
ATGCGCTTCGAGAGGCGCAAAGGATGGTGGACTCGTGCCAGGACTTTGCG
GACCACTTGATCGTGGCCGAATTTCTACCCCATTGTCGCGGCGTGGCCTA
CATCAATATTCGCACCTTGGAGCAGGTCATCTATTGTGTGCAACTAAGTC
GCGCTGGCTATCGGATCGTGTCCTATGAGTTCGATGATGTGGCCGATGAG
GTGGCCAATTGTGACACTGTCTATGAGTCCGCCCATCAATTGCTGGCAGG
GATAAGTCCGCTGTATGGCGAGAAATATGGCTTTGGACGAGAGCCACTGG
GGAAGCGAAAGGAGAAGCAGTCCGCAAGCTTTCTAGACCAT
BO14343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-RB | 360 | CG14505-PB | 1..357 | 17..373 | 1725 | 98.9 | Plus |
| CG14505-RC | 360 | CG14505-PC | 1..357 | 17..373 | 1725 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-RB | 956 | CG14505-RB | 26..382 | 17..373 | 1725 | 98.9 | Plus |
| CG14505-RC | 1033 | CG14505-RC | 26..382 | 17..373 | 1725 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18303596..18303952 | 373..17 | 1725 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:01:09 has no hits.
BO14343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:07 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RB | 1..360 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:27 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RB | 17..382 | 5..373 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:26 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RC | 26..382 | 17..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:08 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RB | 17..382 | 5..373 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:05 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14505-RC | 26..382 | 17..375 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:05 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18303593..18303952 | 17..375 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:26 Download gff for
BO14343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14191098..14191457 | 17..375 | 98 | | Minus |
BO14343.pep Sequence
Translation from 16 to 391
> BO14343.pep
MALVQSDENDFHALREAQRMVDSCQDFADHLIVAEFLPHCRGVAYINIRT
LEQVIYCVQLSRAGYRIVSYEFDDVADEVANCDTVYESAHQLLAGISPLY
GEKYGFGREPLGKRKEKQSASFLDH
BO14343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14505-PB | 119 | CG14505-PB | 1..119 | 1..119 | 623 | 100 | Plus |
| CG14505-PC | 119 | CG14505-PC | 1..119 | 1..119 | 623 | 100 | Plus |
