Clone Sequence Records
BO14344.3prime Sequence
785 bp (726 high quality bases) assembled on 2006-05-29
> BO14344.3prime
ATGGTCTAGAAAGCTTGCCCAACATACTGACTTCTCCTGGAGTATATTAG
CATGGATGCGTTGCGCAAGGAATCTCATTGCGTGCGAGGGCACCGCTGCC
ACAAACAACAAGAATATGACATTGCCCAGCTCATCCATATGGGCATAGCA
CTTGTGGTAGTCCGAGCAGCTATATTGGTCCACTAACGTAGTTTTATTGC
TGGACGACTGGGTTTCAAATTGGTGGACTGCATCCATAGTTTGATCGAAA
AACTTCTTTAGAATGTCCAAGCGCTGTAGATCGCCCACAATGATGCGCTT
GACACTCGCCGACTGGTTTAGATTTCTGGTAAAGAGACTTTTTCGCGTGT
GTCGGTTAATTAGAATGATGGCCAGCACATTTCCATCGATCTCCAGATGC
TCGGGCAGACTGCGCGGCACGCATCGCTCGGCGGCTGCCAAAAGGTTGCC
TTCATTCCGGTAGGCACTCATGGCATGTGCATGCAACTCTCGGAACGAGG
CATTCTCAGCGCCACACAGGACACACAGAGCACTGTTCGACGCCACAGGA
ATACTGACAAAGCGGTAGGCTATATGGGGACTTTTCACGGGCAAATAGAC
CGGCACATCGTGTTGCATTGTGCTCGACGAATTCAACAGAAACAGCAGCA
GCTCGCGGTCCCGAGTGTCCAGATCCCACCAGCCCTCAGTGGCCACAGCG
ATACGGTGTCCCACAACCAGGCAGCAAAAGAGCGAGCCACAGTGGCCACT
AAATTCATTTAGACACTGCAGCAGCTGGGCGTTTT
BO14344.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13396-PA | 1251 | fy-RA | 482..1248 | 785..19 | 3835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-RB | 1547 | CG13396-RB | 540..1306 | 785..19 | 3835 | 100 | Minus |
| fy-RA | 1688 | CG13396-RA | 681..1447 | 785..19 | 3835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8401831..8402542 | 74..785 | 3560 | 100 | Plus |
| 2L | 23513712 | 2L | 8401717..8401773 | 19..75 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:29:59 has no hits.
BO14344.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:25:09 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:48 Download gff for
BO14344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13396-PA | 482..1251 | 16..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:19 Download gff for
BO14344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 681..1447 | 19..785 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:38:57 Download gff for
BO14344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 681..1447 | 19..785 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:38:57 Download gff for
BO14344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8401717..8401771 | 19..73 | 100 | <- | Plus |
| 2L | 8401831..8402542 | 74..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:19 Download gff for
BO14344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8401717..8401771 | 19..73 | 100 | <- | Plus |
| arm_2L | 8401831..8402542 | 74..785 | 100 | | Plus |
BO14344.5prime Sequence
878 bp (798 high quality bases) assembled on 2006-05-29
> BO14344.5prime
GAAGTTATCAGTCGACAATGTCCATCTATTTGTTATGTTTGACAACAAAC
GGCGGATTGCCAGTGTTTACACGAAAGAAGGGAGAATGCGAAAATCTGCC
CTTCTCGACGGTGGCCTCCTTAAACGGCTTTCACATGTTCTTTAAGTCGC
TGGGAATCCAACTGGAGGCCACGACGACCAGCAAACAGCAGCCTATCCAG
AATCAGGCTCCCGCGGATGCCGAGGAGTGGACTTACATATGGCGCGACCG
GGAATCCATCACCCTGATCGTGTGCGGCTGCGGTGTTGGGTCGGAGCAAC
TGCTTCAGACGCTGGCTGATCTTGTCTTTGGAGCGATAGGCATGTTCATT
ACCCGGGCCGCAGAAATGGCACATGCAACGCTCCTCGATAGACTGAAGAA
GGACGCCAAGAAGTATGTCCCGATTGTTGACGCTATTCTGGAAGCCGCCT
GTGCGGGTACACAACTCCTGGGCTACACGGACTGTCTGCTGGCGGCGGAA
AACGCCCAGCTGCTGCAGTGTCTAAATGAATTTAGTGGCCACTGTGGCTC
GCTCTTTTGCTGCCTGGTTGTGGGACACCGTATCGCTGTGGCCACTGAGG
GCTGGTGGGATCTGGACACTCGGGACCGCGAGCTGCTGCTGTTTCTGTTG
AATTCGTCGAGCACAATGCAACACGATGTGCCGGTCTATTTGCCCGTGAA
AAGTCCCCATATAGCCTACCGCTTTGTCAGTATTCCTGTGGCGTCGAACA
GTGCTCTGTGTGTCCTGTGTGGCGCTGAAAATGCCTCGTTCCGAGAGTTG
CATGCACATGCCATGAGTGCCTACCGGAATGAAGGCAACCTTTTGGCAGC
CGCCGAGCGATGCGTGCCGCGCAATCTG
BO14344.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13396-PA | 1251 | fy-RA | 1..856 | 18..873 | 4255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-RB | 1547 | CG13396-RB | 59..919 | 18..878 | 4275 | 99.8 | Plus |
| fy-RA | 1688 | CG13396-RA | 200..1060 | 18..878 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8402163..8402945 | 878..96 | 3885 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8403004..8403081 | 95..18 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:08:18 has no hits.
BO14344.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:25:09 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:50 Download gff for
BO14344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13396-PA | 1..861 | 18..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:49 Download gff for
BO14344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 200..1060 | 18..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:21 Download gff for
BO14344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 200..1060 | 18..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:21 Download gff for
BO14344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8403004..8403081 | 18..95 | 100 | | Minus |
| 2L | 8402163..8402945 | 96..878 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:49 Download gff for
BO14344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8402163..8402945 | 96..878 | 99 | <- | Minus |
| arm_2L | 8403004..8403081 | 18..95 | 100 | | Minus |
BO14344.complete Sequence
1283 bp assembled on 2008-08-15
GenBank Submission: KX798691
> BO14344.complete
GAAGTTATCAGTCGACAATGTCCATCTATTTGTTATGTTTGACAACAAAC
GGCGGATTGCCAGTGTTTACACGAAAGAAGGGAGAATGCGAAAATCTGCC
CTTCTCGACGGTGGCCTCCTTAAACGGCTTTCACATGTTCTTTAAGTCGC
TGGGAATCCAACTGGAGGCCACGACGACCAGCAAACAGCAGCCTATCCAG
AATCAGGCTCCCGCGGATGCCGAGGAGTGGACTTACATATGGCGCGACCG
GGAATCCATCACCCTGATCGTGTGCGGCTGCGGTGTTGGGTCGGAGCAAC
TGCTTCAGACGCTGGCTGATCTTGTCTTTGGAGCGATAGGCATGTTCATT
ACCCGGGCCGCAGAAATGGCACATGCAACGCTCCTCGATAGACTGAAGAA
GGACGCCAAGAAGTATGTCCCGATTGTTGACGCTATTCTGGAAGCCGCCT
GTGCGGGTACACAACTCCTGGGCTACACGGACTGTCTGCTGGCGGCGGAA
AACGCCCAGCTGCTGCAGTGTCTAAATGAATTTAGTGGCCACTGTGGCTC
GCTCTTTTGCTGCCTGGTTGTGGGACACCGTATCGCTGTGGCCACTGAGG
GCTGGTGGGATCTGGACACTCGGGACCGCGAGCTGCTGCTGTTTCTGTTG
AATTCGTCGAGCACAATGCAACACGATGTGCCGGTCTATTTGCCCGTGAA
AAGTCCCCATATAGCCTACCGCTTTGTCAGTATTCCTGTGGCGTCGAACA
GTGCTCTGTGTGTCCTGTGTGGCGCTGAGAATGCCTCGTTCCGAGAGTTG
CATGCACATGCCATGAGTGCCTACCGGAATGAAGGCAACCTTTTGGCAGC
CGCCGAGCGATGCGTGCCGCGCAGTCTGCCCGAGCATCTGGAGATCGATG
GAAATGTGCTGGCCATCATTCTAATTAACCGACACACGCGAAAAAGTCTC
TTTACCAGAAATCTAAACCAGTCGGCGAGTGTCAAGCGCATCATTGTGGG
CGATCTACAGCGCTTGGACATTCTAAAGAAGTTTTTCGATCAAACTATGG
ATGCAGTCCACCAATTTGAAACCCAGTCGTCCAGCAATAAAACTACGTTA
GTGGACCAATATAGCTGCTCGGACTACCACAAGTGCTATGCCCATATGGA
TGAGCTGGGCAATGTCATATTCTTGTTGTTTGTGGCAGCGGTGCCCTCGC
ACGCAATGAGATTCCTTGCGCAACGCATCCATGCTAATATACTCCAGGAG
AAGTCAGTATGTTGGGCAAGCTTTCTAGACCAT
BO14344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-RB | 1251 | CG13396-PB | 1..1248 | 18..1265 | 6240 | 100 | Plus |
| fy-RA | 1251 | CG13396-PA | 1..1248 | 18..1265 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-RB | 1547 | CG13396-RB | 59..1306 | 18..1265 | 6240 | 100 | Plus |
| fy-RA | 1688 | CG13396-RA | 200..1447 | 18..1265 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8401831..8402945 | 1210..96 | 5575 | 100 | Minus |
| 2L | 23513712 | 2L | 8403004..8403081 | 95..18 | 390 | 100 | Minus |
| 2L | 23513712 | 2L | 8401717..8401773 | 1265..1209 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:16 has no hits.
BO14344.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:55 Download gff for
BO14344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 362..1609 | 18..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:47 Download gff for
BO14344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 199..1447 | 17..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:00 Download gff for
BO14344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 361..1609 | 17..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:10 Download gff for
BO14344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 199..1447 | 17..1267 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:10 Download gff for
BO14344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8401714..8401771 | 1211..1267 | 96 | <- | Minus |
| 2L | 8401831..8402945 | 96..1210 | 100 | <- | Minus |
| 2L | 8403004..8403081 | 17..95 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:47 Download gff for
BO14344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8401714..8401771 | 1211..1267 | 96 | <- | Minus |
| arm_2L | 8401831..8402945 | 96..1210 | 100 | <- | Minus |
| arm_2L | 8403004..8403081 | 17..95 | 98 | | Minus |
BO14344.pep Sequence
Translation from 17 to 1283
> BO14344.pep
MSIYLLCLTTNGGLPVFTRKKGECENLPFSTVASLNGFHMFFKSLGIQLE
ATTTSKQQPIQNQAPADAEEWTYIWRDRESITLIVCGCGVGSEQLLQTLA
DLVFGAIGMFITRAAEMAHATLLDRLKKDAKKYVPIVDAILEAACAGTQL
LGYTDCLLAAENAQLLQCLNEFSGHCGSLFCCLVVGHRIAVATEGWWDLD
TRDRELLLFLLNSSSTMQHDVPVYLPVKSPHIAYRFVSIPVASNSALCVL
CGAENASFRELHAHAMSAYRNEGNLLAAAERCVPRSLPEHLEIDGNVLAI
ILINRHTRKSLFTRNLNQSASVKRIIVGDLQRLDILKKFFDQTMDAVHQF
ETQSSSNKTTLVDQYSCSDYHKCYAHMDELGNVIFLLFVAAVPSHAMRFL
AQRIHANILQEKSVCWASFLDH
BO14344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-PB | 416 | CG13396-PB | 1..416 | 1..416 | 2168 | 100 | Plus |
| fy-PA | 416 | CG13396-PA | 1..416 | 1..416 | 2168 | 100 | Plus |
