Clone Sequence Records
BO14346.3prime Sequence
717 bp (671 high quality bases) assembled on 2006-05-29
> BO14346.3prime
ATGGTCTAGAAAGCTTGCTCTCCCTCCGCGTTTCTTTCTTTTGGCCTCCG
GCTCGTCCAGACTGTTGGATCTGCGCGGGGCCTCCTGCCCTCTGGCGGCA
CCACTAGTGCCTGGTCCTCGCCCTGGCTCCTGGCTACCTCCTGGCTCGGG
CAGAGCTAGGGCGCCCCGCCACGAAAGCACCGGATGCACCAAGGTGGATA
GAATGGTGGTTCGGCCGGGCTTGGGTGACAGGCGATAGGTGCGAGTTGGT
GGGACCTGGCGGGGGAGCTGCTCGGGCCATTGCACCGAGAAGTCGCAGCG
CACGACGCAGAGGCTGACCTTGCCTCCGGAGCACAGGTCGTTCTTCATGC
CCGCGGCCACGGCGTCGCAAGCCAGGGCGCAGGCGGACTCCTCGGAGAGG
TCCTCCGACCACCGTGACTCCAGGATGGACATGGATACCTGGTAGCCGGA
GCCGATGGACGTGAAGGGCGCCGTGTCCGTGGAGCCGTCGCTGCGGGTGC
AGAAGAGATGCGCTCCGGTGTTATCCGCGCCGCCTATGATCATGTCGGCA
TCTATATTCCCGTTGAAACGGAACAGCAGCTGCCGTATCATCTGGTTGGC
ACAGCACACCGGCACTTTGCGGAACCCAGTGTTCATCCGGTGAAGCTCCA
GCTGCGCCCGCGTCAGTTCCACCAGGGCTTTCGTGTCCCGAACGGTTCCA
GCTCCCGCGGCAAAATG
BO14346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12161-PA | 969 | CG12161-RA | 270..966 | 715..19 | 3435 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-RA | 1319 | CG12161-RA | 362..1058 | 715..19 | 3455 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5218012..5218705 | 19..712 | 3440 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:19:50 has no hits.
BO14346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:12 Download gff for
BO14346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-PA | 267..969 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:55 Download gff for
BO14346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-PA | 267..969 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:29 Download gff for
BO14346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 277..976 | 19..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:54:35 Download gff for
BO14346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 359..1058 | 19..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:54:35 Download gff for
BO14346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5218012..5218708 | 19..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:29 Download gff for
BO14346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1043734..1044430 | 19..717 | 99 | | Plus |
BO14346.5prime Sequence
863 bp (674 high quality bases) assembled on 2006-05-29
> BO14346.5prime
GAAGTTATCAGTCGACATGTTCAACGGCTTACCAACCTTGATGAAATACC
CAGACCGATCGCCTTTTCTGTGCGGTCCCAGCGGATTTACATTCGACAAT
TGTCTGCGCAACAAACAACTAAAAGAGAATGGCCTTGAGGAGCCGAATAG
CTTTACTACTGGCACCACTGTGGTGGGCATCGTGTTCGACGGCGGAGTAA
TCATAGGCGCCGAGTCCAGGGCTACCAGCGGCGGCATAGTTTTCTCAAAG
ACGTGCCGCAAAATTATTGAGCTGCAGGCCAACATTTTTGCCGCGGGAGC
TGGAACCGCTCGGGACACGAAAGCCCTGGTGGAACTGACGCGGGCGCAGC
TGGAGCTTCACCGGATGAACACTGGGTTCCGCAAAGTGCCGGTGTGCTGT
GCCAACCAGATGATACGGCAGCTGCTGTTCCGTTTCAACGGGAATATAGA
TGCCGACATGATCATAGGCGGCGCGGATAACACCGGAGCGCATCTCTTCT
GCACCCGCAGCGACGGCTCCACGGACACGGCGCCCTTCACGTCCATCGGC
TCCGGCTACCAGGTATCCATGTCCATCCTGGAGTCACGGTGGTCGGAGGA
CCTCTCCGAGGAGTCCGCCTGCGCCCTGGCTTGCGACGCCGTGGCCGCGG
GCATGAAGAACGACCTGTGCTCCGGAGGCAAGGTCAGCCTCTGCGTCGTG
CGCTGCGACTTCTCGGTGCAATGGCCCGAGCAGCTCCCCCGCCAGGTCCC
ACCAACTCGCACCTATCGCCTGTCACCCAAGCCCGGCCGAACCACCATTC
TATCCACCTTGGTGCATCCGGTGCTTTCGTGGGCGGGGCGCCCTAGCTCT
GCCCGAGCCAGGA
BO14346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12161-PA | 969 | CG12161-RA | 1..816 | 17..832 | 4055 | 99.8 | Plus |
| CG12161-PA | 969 | CG12161-RA | 815..846 | 832..863 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-RA | 1319 | CG12161-RA | 93..938 | 17..863 | 4195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5218132..5218705 | 863..289 | 2810 | 99.7 | Minus |
| 3R | 32079331 | 3R | 5218771..5218951 | 288..108 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 5219345..5219436 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:06:11 has no hits.
BO14346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:13 Download gff for
BO14346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-PA | 1..845 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:19:56 Download gff for
BO14346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-PA | 1..845 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:31 Download gff for
BO14346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 11..855 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:53 Download gff for
BO14346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 93..937 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:53 Download gff for
BO14346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5218133..5218705 | 289..862 | 99 | <- | Minus |
| 3R | 5218771..5218950 | 109..288 | 100 | <- | Minus |
| 3R | 5219345..5219436 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:31 Download gff for
BO14346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1043855..1044427 | 289..862 | 99 | <- | Minus |
| arm_3R | 1044493..1044672 | 109..288 | 100 | <- | Minus |
| arm_3R | 1045067..1045158 | 17..108 | 100 | | Minus |
BO14346.complete Sequence
1000 bp assembled on 2006-10-11
GenBank Submission: FJ633095
> BO14346.complete
GAAGTTATCAGTCGACATGTTCAACGGCTTACCAACCTTGATGAAATACC
CAGACCGATCGCCTTTTCTGTGCGGTCCCAGCGGATTTACATTCGACAAT
TGTCTGCGCAACAAACAACTAAAAGAGAATGGCCTTGAGGAGCCGAATAG
CTTTACTACTGGCACCACTGTGGTGGGCATCGTGTTCGACGGCGGAGTAA
TCATAGGCGCCGAGTCCAGGGCTACCAGCGGCGGCATAGTTTTCTCAAAG
ACGTGCCGCAAAATTATTGAGCTGCAGGCCAACATTTTTGCCGCGGGAGC
TGGAACCGCTCGGGACACGAAAGCCCTGGTGGAACTGACGCGGGCGCAGC
TGGAGCTTCACCGGATGAACACTGGGTTCCGCAAAGTGCCGGTGTGCTGT
GCCAACCAGATGATACGGCAGCTGCTGTTCCGTTTCAACGGGAATATAGA
TGCCGACATGATCATAGGCGGCGCGGATAACACCGGAGCGCATCTCTTCT
GCACCCGCAGCGACGGCTCCACGGACACGGCGCCCTTCACGTCCATCGGC
TCCGGCTACCAGGTATCCATGTCCATCCTGGAGTCACGGTGGTCGGAGGA
CCTCTCCGAGGAGTCCGCCTGCGCCCTGGCTTGCGACGCCGTGGCCGCGG
GCATGAAGAACGACCTGTGCTCCGGAGGCAAGGTCAGCCTCTGCGTCGTG
CGCTGCGACTTCTCGGTGCAATGGCCCGAGCAGCTCCCCCGCCAGGTCCC
ACCAACTCGCACCTATCGCCTGTCACCCAAGCCCGGCCGAACCACCATTC
TATCCACCTTGGTGCATCCGGTGCTTTCGTGGCGGGGCGCCCTAGCTCTG
CCCGAGCCAGGAGGTAGCCAGGAGCCAGGGCGAGGACCAGGCACTAGTGG
TGCCGCCAGAGGGCAGGAGGCCCCGCGCAGATCCAACAGTCTGGACGAGC
CGGAGGCCAAAAGAAAGAAACGCGGAGGGAGAGCAAGCTTTCTAGACCAT
BO14346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-RA | 969 | CG12161-PA | 1..966 | 17..982 | 4815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-RA | 1319 | CG12161-RA | 93..1058 | 17..982 | 4815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5218012..5218705 | 982..289 | 3455 | 99.9 | Minus |
| 3R | 32079331 | 3R | 5218771..5218951 | 288..108 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 5219345..5219436 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:47:06 has no hits.
BO14346.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:26 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-RA | 1..969 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:48 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-RA | 11..976 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:25 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 16..976 | 22..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:28 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-RA | 11..976 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:37 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 98..1058 | 22..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:37 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5218010..5218705 | 289..984 | 99 | <- | Minus |
| 3R | 5218771..5218950 | 109..288 | 100 | <- | Minus |
| 3R | 5219345..5219431 | 22..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:25 Download gff for
BO14346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1043732..1044427 | 289..984 | 99 | <- | Minus |
| arm_3R | 1044493..1044672 | 109..288 | 100 | <- | Minus |
| arm_3R | 1045067..1045153 | 22..108 | 100 | | Minus |
BO14346.pep Sequence
Translation from 16 to 1000
> BO14346.pep
MFNGLPTLMKYPDRSPFLCGPSGFTFDNCLRNKQLKENGLEEPNSFTTGT
TVVGIVFDGGVIIGAESRATSGGIVFSKTCRKIIELQANIFAAGAGTARD
TKALVELTRAQLELHRMNTGFRKVPVCCANQMIRQLLFRFNGNIDADMII
GGADNTGAHLFCTRSDGSTDTAPFTSIGSGYQVSMSILESRWSEDLSEES
ACALACDAVAAGMKNDLCSGGKVSLCVVRCDFSVQWPEQLPRQVPPTRTY
RLSPKPGRTTILSTLVHPVLSWRGALALPEPGGSQEPGRGPGTSGAARGQ
EAPRRSNSLDEPEAKRKKRGGRASFLDH
BO14346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-PA | 322 | CG12161-PA | 1..322 | 1..322 | 1693 | 100 | Plus |
| Prosbeta2-PA | 272 | CG3329-PA | 12..268 | 22..279 | 533 | 43.7 | Plus |
| Prosbeta2R1-PA | 307 | CG18341-PA | 21..264 | 22..266 | 516 | 43.3 | Plus |
| Prosbeta5-PA | 282 | CG12323-PA | 47..255 | 26..231 | 210 | 27.6 | Plus |
| Prosbeta5-PB | 282 | CG12323-PB | 47..255 | 26..231 | 210 | 27.6 | Plus |
