Clone BO14348 Report

Search the DGRC for BO14348

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG5478-RA
Protein status:BO14348.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO14348.3prime Sequence

759 bp (604 high quality bases) assembled on 2006-05-29

> BO14348.3prime
ATGGTCTAGAAAGCTTGCGTGCTTGGATTTTGATTTTTTCGCCTTTCTCC
CCAGAGCGTCGAAAATGTTTGGTTTCAATTGCGGCACATGGTCAAGGATG
TACGGAGGACGTACGTCCATAATTTCCCGCGTGTAGTGGTTGCCGTGCTT
GGTCTTGCGCAGCCGATCCAATTCGATGGTAGCCTTTATTGACGGCCTGG
AGCCCTCCGCTGGAGTGATCTTTATCTTGGTGCAGTGCCCCCGCTCCAAA
TAGTTAATAGTGGCGATCAGGGAATGTATATCAGCGATGACGGACGAGGT
CTGCTCGTGGATTTTTAGCAGAGCCTTCAGATTGGCATATATCCTGGCCA
GCCGTTTGTCCACGGGGGATTGATTATTAGGATCACAGTTCTTTTTCTGA
TGCGGAACTGAGTACTTGATGAACTGGCGTTCGTTGCCCTTCGGTGGTTC
AGGAGTCTCCTTGCACGGCTTGGGCACCAACCGCTCCGACACCTCCATCA
GTCGCACCTGCTCATCCAAACTGCTCAAGGGCAGCTTTCGCATTATGCGG
CGCAGCTGCTTGCGCTTTTTGGGCGTGAGCAGGTGGTGGTGCTTCTGAAA
GCGCTCCACTCCGCGGTGCAAGTTCTCCATCATCTTTACCCAAACGTCCA
TGCTCCTGCTCTCCGCCTCGATTTTCATTCTGGAGTCGTACGCGCTTTGA
GCGAAAATGCCGTATTTGTCCGTGTAGCGACTTCCTCTGATTCTGATCAT
TTCAATGCT

BO14348.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-PA 792 CG5478-RA 134..789 674..19 3280 100 Minus
CG5478-PA 792 CG5478-RA 58..136 751..673 320 96.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-RA 1035 CG5478-RA 98..837 759..19 3605 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15932898..15933637 19..759 3580 99.2 Plus
Blast to na_te.dros performed on 2015-02-06 11:42:53 has no hits.

BO14348.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:17 Download gff for BO14348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-PA 50..792 16..759 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:01 Download gff for BO14348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-PA 50..792 16..759 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:21 Download gff for BO14348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 98..849 8..759 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:06 Download gff for BO14348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 98..849 8..759 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:06 Download gff for BO14348.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15932886..15933637 8..759 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:21 Download gff for BO14348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11758608..11759359 8..759 98   Plus

BO14348.5prime Sequence

802 bp (762 high quality bases) assembled on 2006-05-29

> BO14348.5prime
GAAGTTATCAGTCGACATGATTCAGGAACCGAACTGGAAAAAGGACTACG
ACCGTCTGGTCCGCGAGCATTTGAATGATCAGAATCAGACGAAGTCGCTA
CAACGACAAATACGGCATTTTCGCTCAAAGCGCGTACGACTCCAGAATGA
AATCGAGGCGGAGAGCAGGAGCATGGACGTTTGGGTAAAGATGATGGAGA
ACTTGCACCGCGGAGTGGAGCGCTTTCAGAAGCACCACCACCTGCTCACG
CCCAAAAAGCGCAAGCAGCTGCGCCGCATAATGCGAAAGCTGCCCTTGAG
CAGTTTGGATGAGCAGGTGCGACTGATGGAGGTGTCGGAGCGGTTGGTGC
CCAAGCCGTGCAAGGAGACTCCTGAACCACCGAAGGGCAACGAACGCCAG
TTCATCAAGTACTCAGTTCCGCATCAGAAAAAGAACTGTGATCCTAATAA
TCAATCCCCCGTGGACAAACGGCTGGCCAGGATATATGCCAATCTGAAGG
CTCTGCTAAAAATCCACGAGCAGACCTCGTCCGTCATCGCTGATATACAT
TCCCTGATCGCCACTATTAACTATTTGGAGCGGGGGCACTGCACCAAGAT
AAAGATCACTCCAGCGGAGGGCTCCAGGCCGTCAATAAAGGCTACCATCG
AATTGGATCGGCTGCGCAAGACCAAGCACGGCAACCACTACACGCGGGAA
AATTATGGACGTACGTCCTCCGTACATCCTTGACCATGTGCCCGCAATTG
AAACCAAACATTTTCGACGCTCTGGGGGAGAAAGGGCGAAAAAATCAAAA
TC

BO14348.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-PA 792 CG5478-RA 1..685 17..701 3425 100 Plus
CG5478-PA 792 CG5478-RA 683..725 700..742 215 100 Plus
CG5478-PA 792 CG5478-RA 724..759 742..777 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-RA 1035 CG5478-RA 49..830 17..802 3830 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15932905..15933686 802..17 3730 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 05:29:01 has no hits.

BO14348.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:18 Download gff for BO14348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-PA 1..782 17..802 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:02 Download gff for BO14348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-PA 1..782 17..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:00 Download gff for BO14348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 39..830 3..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:27 Download gff for BO14348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 39..830 3..802 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:27 Download gff for BO14348.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15932905..15933696 3..802 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:00 Download gff for BO14348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11758627..11759418 3..802 98   Minus

BO14348.complete Sequence

823 bp assembled on 2006-10-11

GenBank Submission: FJ633096

> BO14348.complete
GAAGTTATCAGTCGACATGATTCAGGAACCGAACTGGAAAAAGGACTACG
ACCGTCTGGTCCGCGAGCATTTGAATGATCAGAATCAGACGAAGTCGCTA
CAACGACAAATACGGCATTTTCGCTCAAAGCGCGTACGACTCCAGAATGA
AATCGAGGCGGAGAGCAGGAGCATGGACGTTTGGGTAAAGATGATGGAGA
ACTTGCACCGCGGAGTGGAGCGCTTTCAGAAGCACCACCACCTGCTCACG
CCCAAAAAGCGCAAGCAGCTGCGCCGCATAATGCGAAAGCTGCCCTTGAG
CAGTTTGGATGAGCAGGTGCGACTGATGGAGGTGTCGGAGCGGTTGGTGC
CCAAGCCGTGCAAGGAGACTCCTGAACCACCGAAGGGCAACGAACGCCAG
TTCATCAAGTACTCAGTTCCGCATCAGAAAAAGAACTGTGATCCTAATAA
TCAATCCCCCGTGGACAAACGGCTGGCCAGGATATATGCCAATCTGAAGG
CTCTGCTAAAAATCCACGAGCAGACCTCGTCCGTCATCGCTGATATACAT
TCCCTGATCGCCACTATTAACTATTTGGAGCGGGGGCACTGCACCAAGAT
AAAGATCACTCCAGCGGAGGGCTCCAGGCCGTCAATAAAGGCTACCATCG
AATTGGATCGGCTGCGCAAGACCAAGCACGGCAACCACTACACGCGGGAA
ATTATGGACGTACGTCCTCCGTACATCCTTGACCATGTGCCGCAATTGAA
ACCAAACATTTTCGACGCTCTGGGGAGAAAGGCGAAAAAATCAAAATCCA
AGCACGCAAGCTTTCTAGACCAT

BO14348.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-RA 792 CG5478-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-RA 1035 CG5478-RA 49..837 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15932898..15933686 805..17 3945 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:54:28 has no hits.

BO14348.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:34 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:49 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 39..849 3..816 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:48 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 49..837 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:34 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 39..849 3..816 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:28 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
CG5478-RA 49..837 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:28 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15932895..15933686 17..807 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:48 Download gff for BO14348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11758617..11759408 17..807 99   Minus

BO14348.pep Sequence

Translation from 16 to 823

> BO14348.pep
MIQEPNWKKDYDRLVREHLNDQNQTKSLQRQIRHFRSKRVRLQNEIEAES
RSMDVWVKMMENLHRGVERFQKHHHLLTPKKRKQLRRIMRKLPLSSLDEQ
VRLMEVSERLVPKPCKETPEPPKGNERQFIKYSVPHQKKNCDPNNQSPVD
KRLARIYANLKALLKIHEQTSSVIADIHSLIATINYLERGHCTKIKITPA
EGSRPSIKATIELDRLRKTKHGNHYTREIMDVRPPYILDHVPQLKPNIFD
ALGRKAKKSKSKHASFLDH

BO14348.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5478-PA 263 CG5478-PA 1..263 1..263 1381 100 Plus