Clone Sequence Records
BO14348.3prime Sequence
759 bp (604 high quality bases) assembled on 2006-05-29
> BO14348.3prime
ATGGTCTAGAAAGCTTGCGTGCTTGGATTTTGATTTTTTCGCCTTTCTCC
CCAGAGCGTCGAAAATGTTTGGTTTCAATTGCGGCACATGGTCAAGGATG
TACGGAGGACGTACGTCCATAATTTCCCGCGTGTAGTGGTTGCCGTGCTT
GGTCTTGCGCAGCCGATCCAATTCGATGGTAGCCTTTATTGACGGCCTGG
AGCCCTCCGCTGGAGTGATCTTTATCTTGGTGCAGTGCCCCCGCTCCAAA
TAGTTAATAGTGGCGATCAGGGAATGTATATCAGCGATGACGGACGAGGT
CTGCTCGTGGATTTTTAGCAGAGCCTTCAGATTGGCATATATCCTGGCCA
GCCGTTTGTCCACGGGGGATTGATTATTAGGATCACAGTTCTTTTTCTGA
TGCGGAACTGAGTACTTGATGAACTGGCGTTCGTTGCCCTTCGGTGGTTC
AGGAGTCTCCTTGCACGGCTTGGGCACCAACCGCTCCGACACCTCCATCA
GTCGCACCTGCTCATCCAAACTGCTCAAGGGCAGCTTTCGCATTATGCGG
CGCAGCTGCTTGCGCTTTTTGGGCGTGAGCAGGTGGTGGTGCTTCTGAAA
GCGCTCCACTCCGCGGTGCAAGTTCTCCATCATCTTTACCCAAACGTCCA
TGCTCCTGCTCTCCGCCTCGATTTTCATTCTGGAGTCGTACGCGCTTTGA
GCGAAAATGCCGTATTTGTCCGTGTAGCGACTTCCTCTGATTCTGATCAT
TTCAATGCT
BO14348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-PA | 792 | CG5478-RA | 134..789 | 674..19 | 3280 | 100 | Minus |
CG5478-PA | 792 | CG5478-RA | 58..136 | 751..673 | 320 | 96.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-RA | 1035 | CG5478-RA | 98..837 | 759..19 | 3605 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15932898..15933637 | 19..759 | 3580 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:42:53 has no hits.
BO14348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:17 Download gff for
BO14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-PA | 50..792 | 16..759 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:01 Download gff for
BO14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-PA | 50..792 | 16..759 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:54:21 Download gff for
BO14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 98..849 | 8..759 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:06 Download gff for
BO14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 98..849 | 8..759 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:06 Download gff for
BO14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15932886..15933637 | 8..759 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:54:21 Download gff for
BO14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11758608..11759359 | 8..759 | 98 | | Plus |
BO14348.5prime Sequence
802 bp (762 high quality bases) assembled on 2006-05-29
> BO14348.5prime
GAAGTTATCAGTCGACATGATTCAGGAACCGAACTGGAAAAAGGACTACG
ACCGTCTGGTCCGCGAGCATTTGAATGATCAGAATCAGACGAAGTCGCTA
CAACGACAAATACGGCATTTTCGCTCAAAGCGCGTACGACTCCAGAATGA
AATCGAGGCGGAGAGCAGGAGCATGGACGTTTGGGTAAAGATGATGGAGA
ACTTGCACCGCGGAGTGGAGCGCTTTCAGAAGCACCACCACCTGCTCACG
CCCAAAAAGCGCAAGCAGCTGCGCCGCATAATGCGAAAGCTGCCCTTGAG
CAGTTTGGATGAGCAGGTGCGACTGATGGAGGTGTCGGAGCGGTTGGTGC
CCAAGCCGTGCAAGGAGACTCCTGAACCACCGAAGGGCAACGAACGCCAG
TTCATCAAGTACTCAGTTCCGCATCAGAAAAAGAACTGTGATCCTAATAA
TCAATCCCCCGTGGACAAACGGCTGGCCAGGATATATGCCAATCTGAAGG
CTCTGCTAAAAATCCACGAGCAGACCTCGTCCGTCATCGCTGATATACAT
TCCCTGATCGCCACTATTAACTATTTGGAGCGGGGGCACTGCACCAAGAT
AAAGATCACTCCAGCGGAGGGCTCCAGGCCGTCAATAAAGGCTACCATCG
AATTGGATCGGCTGCGCAAGACCAAGCACGGCAACCACTACACGCGGGAA
AATTATGGACGTACGTCCTCCGTACATCCTTGACCATGTGCCCGCAATTG
AAACCAAACATTTTCGACGCTCTGGGGGAGAAAGGGCGAAAAAATCAAAA
TC
BO14348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-PA | 792 | CG5478-RA | 1..685 | 17..701 | 3425 | 100 | Plus |
CG5478-PA | 792 | CG5478-RA | 683..725 | 700..742 | 215 | 100 | Plus |
CG5478-PA | 792 | CG5478-RA | 724..759 | 742..777 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-RA | 1035 | CG5478-RA | 49..830 | 17..802 | 3830 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15932905..15933686 | 802..17 | 3730 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:29:01 has no hits.
BO14348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:18 Download gff for
BO14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-PA | 1..782 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:02 Download gff for
BO14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-PA | 1..782 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:00 Download gff for
BO14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 39..830 | 3..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:27 Download gff for
BO14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 39..830 | 3..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:27 Download gff for
BO14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15932905..15933696 | 3..802 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:00 Download gff for
BO14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11758627..11759418 | 3..802 | 98 | | Minus |
BO14348.complete Sequence
823 bp assembled on 2006-10-11
GenBank Submission: FJ633096
> BO14348.complete
GAAGTTATCAGTCGACATGATTCAGGAACCGAACTGGAAAAAGGACTACG
ACCGTCTGGTCCGCGAGCATTTGAATGATCAGAATCAGACGAAGTCGCTA
CAACGACAAATACGGCATTTTCGCTCAAAGCGCGTACGACTCCAGAATGA
AATCGAGGCGGAGAGCAGGAGCATGGACGTTTGGGTAAAGATGATGGAGA
ACTTGCACCGCGGAGTGGAGCGCTTTCAGAAGCACCACCACCTGCTCACG
CCCAAAAAGCGCAAGCAGCTGCGCCGCATAATGCGAAAGCTGCCCTTGAG
CAGTTTGGATGAGCAGGTGCGACTGATGGAGGTGTCGGAGCGGTTGGTGC
CCAAGCCGTGCAAGGAGACTCCTGAACCACCGAAGGGCAACGAACGCCAG
TTCATCAAGTACTCAGTTCCGCATCAGAAAAAGAACTGTGATCCTAATAA
TCAATCCCCCGTGGACAAACGGCTGGCCAGGATATATGCCAATCTGAAGG
CTCTGCTAAAAATCCACGAGCAGACCTCGTCCGTCATCGCTGATATACAT
TCCCTGATCGCCACTATTAACTATTTGGAGCGGGGGCACTGCACCAAGAT
AAAGATCACTCCAGCGGAGGGCTCCAGGCCGTCAATAAAGGCTACCATCG
AATTGGATCGGCTGCGCAAGACCAAGCACGGCAACCACTACACGCGGGAA
ATTATGGACGTACGTCCTCCGTACATCCTTGACCATGTGCCGCAATTGAA
ACCAAACATTTTCGACGCTCTGGGGAGAAAGGCGAAAAAATCAAAATCCA
AGCACGCAAGCTTTCTAGACCAT
BO14348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-RA | 792 | CG5478-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-RA | 1035 | CG5478-RA | 49..837 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15932898..15933686 | 805..17 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:54:28 has no hits.
BO14348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:34 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:49 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 39..849 | 3..816 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:48 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 49..837 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:34 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 39..849 | 3..816 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:28 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5478-RA | 49..837 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:28 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15932895..15933686 | 17..807 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:48 Download gff for
BO14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11758617..11759408 | 17..807 | 99 | | Minus |
BO14348.pep Sequence
Translation from 16 to 823
> BO14348.pep
MIQEPNWKKDYDRLVREHLNDQNQTKSLQRQIRHFRSKRVRLQNEIEAES
RSMDVWVKMMENLHRGVERFQKHHHLLTPKKRKQLRRIMRKLPLSSLDEQ
VRLMEVSERLVPKPCKETPEPPKGNERQFIKYSVPHQKKNCDPNNQSPVD
KRLARIYANLKALLKIHEQTSSVIADIHSLIATINYLERGHCTKIKITPA
EGSRPSIKATIELDRLRKTKHGNHYTREIMDVRPPYILDHVPQLKPNIFD
ALGRKAKKSKSKHASFLDH
BO14348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5478-PA | 263 | CG5478-PA | 1..263 | 1..263 | 1381 | 100 | Plus |