Clone Sequence Records
BO14353.3prime Sequence
671 bp (626 high quality bases) assembled on 2006-05-29
> BO14353.3prime
ATGGTCTAGAAAGCTTGCCCGGGACTGATAGTTGATACGATTGCGAGGAG
TGTAGTCCATGACGAATCTGTGGCGCCTCTGTTGATACTGCGACTGGCTA
AGGAAGATACTGGCCAATCCCTTGATGGTCACAAAGGTCAGTCCGCCCAG
GAGGATGCTCAATAACTTGTTCTCCTCGTAGATCCTGCCGAAGAGCTTCT
GTCCCAGCACCACGGAAATGGTGGGCAGACTTAGGGCAATGCAGAAGCTG
GTGGAGGCGCGACCAAGTTGCTCCGTTGCCAAGTTACCGCCAATTAGGCC
ATCCGAGGCCGGATACTCGCGCTCCAGCTCATCGAAGTACTCATCGCTCA
GCGGAGCACCGGGCAGGGGTAGACCCACAGCATCCAGTTGCTCGGCGGGA
ATGGCGCTACGTTTGCGCCGACGCAGCCAACGGATCACGCAGTCCTCCCA
GCGCACAAGCCTGCTGAGAAGTATGAGCGTCGGCACCGATGGCAGCACAA
TCATCAGCAGCGAGGGATCCTCTTGGAGCAGCTTCATGCCCGTGCTATAG
CCGGCCAGTTGGAGCACGGTGAGTGCTCCGTAGATCACCGCGGAGAAGTA
AACGGTGGCCGCCAGGATGCCCATCAGAACACTTGGGACACATACGATCG
CAGCCCTTGTCCAGTCGCTCC
BO14353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-PA | 972 | CG10761-RA | 355..969 | 633..19 | 3025 | 99.6 | Minus |
| CG10761-PA | 972 | CG10761-RA | 318..355 | 671..634 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 1253 | CG10761-RA | 482..1133 | 671..19 | 3210 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8161660..8162311 | 19..671 | 3185 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:33:52 has no hits.
BO14353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:26 Download gff for
BO14353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-PA | 318..972 | 18..671 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:14 Download gff for
BO14353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-PA | 318..972 | 18..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:23:42 Download gff for
BO14353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 482..1137 | 13..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:39:24 Download gff for
BO14353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 482..1137 | 13..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:39:24 Download gff for
BO14353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8161656..8162311 | 13..671 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:23:42 Download gff for
BO14353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8055689..8056344 | 13..671 | 99 | | Plus |
BO14353.5prime Sequence
819 bp (730 high quality bases) assembled on 2006-05-29
> BO14353.5prime
GAAGTTATCAGTCGACATGAGCCGACAATTTATGCATTTACCGCTTCACA
GCCGGCTGCGCCGTTTGAGAAGCGGATTGGAACCGCCATCCGGCAATGTC
CTGGATGACAGAATGTGCTGGATTTGCCTGAGGGGCGATGAGGATCACCG
CCGAAGGGATTGGGTGCATCCGTGTCGCTGTCGCGGCACCAATAAATGGG
TGCACGAGGCCTGTCTGAGTCGCTGGATCGATGAGAAGGAGATGCTATCG
CCGGGTGCTCCCGTGACGTGCACCCAATGCCGCACGGAGTACATTATAGT
GATGCCGCCACTATGCCGCTTCGATGCCATGCTGGAGCGACTGGACAAGG
GCTGCGATCGTATGTGTCCCAGTGTTCTGATGGGCATCCTGGCGGCCACC
GTTTACTTCTCCGCGGTGATCTACGGAGCACTCACCGTGCTCCAACTGGC
CGGCTATAGCACGGGCATGAAGCTGCTCCAAGAGGATCCCTCGCTGCTGA
TGATTGTGCTGCCATCGGTGCCGACGCTCCTACTTCTCAGCAGGCTTGTG
CGCTGGGAGGACTGCGTGATCCGTTGGCTGCGTCGGCGCAAACGTAGCGC
CATTCCCGCCGAGCAACTGGATGCTGTGGGTCTACCCCTGCCCGGTGCTC
CGCTGAGCGATGAGTACTTCGATGAGCTGGAGCGCGAGTATCCGGCCTCG
GATGGCCTAATTGGCGGTAACTTGGCAACGGAGCAACTTGGTCGCGCCTC
CACCAGCTTCTGCATTGCCCTAAGTCTGCCCCACATTTCCGTGGTGCTGG
GACAGAAGCTCTTCGGCAG
BO14353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-PA | 972 | CG10761-RA | 1..803 | 17..819 | 3915 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 1253 | CG10761-RA | 165..967 | 17..819 | 3955 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8161826..8162628 | 819..17 | 3955 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:48:54 has no hits.
BO14353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:27 Download gff for
BO14353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:15 Download gff for
BO14353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:25 Download gff for
BO14353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..967 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:26 Download gff for
BO14353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..967 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:26 Download gff for
BO14353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8161826..8162635 | 9..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:25 Download gff for
BO14353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8055859..8056668 | 9..819 | 99 | | Minus |
BO14353.complete Sequence
1003 bp assembled on 2008-11-10
GenBank Submission: KX794492
> BO14353.complete
GAAGTTATCAGTCGACATGAGCCGACAATTTATGCATTTACCGCTTCACA
GCCGGCTGCGCCGTTTGAGAAGCGGATTGGAACCGCCATCCGGCAATGTC
GTGGATGACAGAATGTGCTGGATTTGCCTGAGGGGCGATGAGGATCACCG
CCGAAGGGATTGGGTGCATCCGTGTCGCTGTCGCGGCACCAATAAATGGG
TGCACGAGGCCTGTCTGAGTCGCTGGATCGATGAGAAGGAGATGCTATCG
CCGGGTGCTCCCGTGACGTGCACCCAATGCCGCACGGAGTACATTATAGT
GATGCCGCCACTATGCCGCTTCGATGCCATGCTGGAGCGACTGGACAAGG
GCTGCGATCGTATGTGTCCCAGTGTTCTGATGGGCATCCTGGCGGCCACC
GTTTACTTCTCCGCGGTGATCTACGGAGCACTCACCGTGCTCCAACTGGC
CGGCTATAGCACGGGCATGAAGCTGCTCCAAGAGGATCCCTCGCTGCTGA
TGATTGTGCTGCCATCGGTGCCGACGCTCCTACTTCTCAGCAGGCTTGTG
CGCTGGGAGGACTGCGTGATCCGTTGGCTGCGTCGGCGCAAACGTAGCGC
CATTCCCGCCGAGCAACTGGATGCTGTGGGTCTACCCCTGCCCGGTGCTC
CGCTGAGCGATGAGTACTTCGATGAGCTGGAGCGCGAGTATCCGGCCTCG
GATGGCCTAATTGGCGGTAACTTGGCAACGGAGCAACTTGGTCGCGCCTC
CACCAGCTTCTGCATTGCCCTAAGTCTGCCCACCATTTCCGTGGTGCTGG
GACAGAAGCTCTTCGGCAGGATCTACGAGGAGAACAAGTTATTGAGCATC
CTCCTGGGCGGACTGACCTTTGTGACCATCAAGGGATTGGCCAGTATCTT
CCTTAGCCAGTCGCAGTATCAACAGAGGCGCCACAGATTCGTCATGGACT
ACACTCCTCGCAATCGTATCAACTATCAGTCCCGGGCAAGCTTTCTAGAC
CAT
BO14353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 972 | CG10761-PA | 1..969 | 17..985 | 4830 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-RA | 1253 | CG10761-RA | 165..1133 | 17..985 | 4830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8161660..8162628 | 985..17 | 4830 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:03 has no hits.
BO14353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:27 Download gff for
BO14353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 158..1137 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:56 Download gff for
BO14353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 165..1133 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:04 Download gff for
BO14353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 165..1133 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:29 Download gff for
BO14353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10761-RA | 165..1133 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:29 Download gff for
BO14353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8161656..8162628 | 17..987 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:56 Download gff for
BO14353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8055689..8056661 | 17..987 | 99 | | Minus |
BO14353.pep Sequence
Translation from 16 to 1003
> BO14353.pep
MSRQFMHLPLHSRLRRLRSGLEPPSGNVVDDRMCWICLRGDEDHRRRDWV
HPCRCRGTNKWVHEACLSRWIDEKEMLSPGAPVTCTQCRTEYIIVMPPLC
RFDAMLERLDKGCDRMCPSVLMGILAATVYFSAVIYGALTVLQLAGYSTG
MKLLQEDPSLLMIVLPSVPTLLLLSRLVRWEDCVIRWLRRRKRSAIPAEQ
LDAVGLPLPGAPLSDEYFDELEREYPASDGLIGGNLATEQLGRASTSFCI
ALSLPTISVVLGQKLFGRIYEENKLLSILLGGLTFVTIKGLASIFLSQSQ
YQQRRHRFVMDYTPRNRINYQSRASFLDH
BO14353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10761-PA | 323 | CG10761-PA | 1..323 | 1..323 | 1704 | 100 | Plus |
| CG9855-PC | 382 | CG9855-PC | 62..341 | 31..323 | 570 | 40.7 | Plus |
| CG9855-PA | 382 | CG9855-PA | 62..341 | 31..323 | 570 | 40.7 | Plus |
| CG16781-PA | 383 | CG16781-PA | 34..325 | 27..316 | 484 | 35.8 | Plus |
| CG16781-PB | 386 | CG16781-PB | 37..328 | 27..316 | 484 | 35.8 | Plus |
