Clone Sequence Records
BO14355.3prime Sequence
779 bp (741 high quality bases) assembled on 2006-05-29
> BO14355.3prime
ATGGTCTAGAAAGCTTGCCTCTGAGCACTGCTTCTTCTTGGGAATTTTGC
GGCCACATAAGTCGGTTCGGCTGCACATACTGGGTTCCTCCTCATCGGTG
CTGGCCTCCGAGTCACTAGACTCCGTGTAGGAGCCGATGCCCGGAAGTAT
AGCGATGCACTTTAGGGCCCCCTGGTTGTATTTGTTTGTAATTAATGTGG
TGTTCGTTGTCTTATCAGCAGGGTCCTTGGTTGCTTCATTTGTCGCTGTC
TGTTCGACCTCATTCTCAGTGATTTTGGCTACTTTACTGGTGGTGGGCAG
TTCGCCGTTTTTTCTCTTGATGCCCTGGCCGAGCAGCGTCTTCTGAGTGC
TACGCCCGACCGAAGCTCCCGCGGACTTCGCTGTGGTTTTTAGTTCAGCT
TGCAGTTTCTTGTCTACACTCTCCTCCTGCAGCTTTTCCACACGATTGCG
AAAATCCTTTAGTTCTAGCTCCTCGTCGCGCATTTGCTGGCGCTCCGCGT
GTATTTTATGGGCATCGACCAATTCCAGAAACTGCACCTCATCATCGTCC
AGACCACGGATGAGGTTTTTCAGCTTGTGGGCTTCCTCGAACTCCATGTC
CTTCTTGTCCTTATTTTGTTTGAGGCGTTCATAAAGTGAGCGCCCATCGT
AGGGTTCCTCACGTCGTTCTAGTGGATCCTCCGGCTGGCGTACACGCTCC
CATTCCTCCTGACGTCTCTGCCTTTGCTCGGTCGCCTCAGCTTCAGTCAC
AAAGCCCGAACTCATGTCAACTGATAACT
BO14355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PA | 750 | CG14480-RA | 1..747 | 765..19 | 3710 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 875 | CG14480-RB | 53..800 | 766..19 | 3725 | 99.9 | Minus |
CG14480-RA | 1337 | CG14480-RA | 515..1262 | 766..19 | 3725 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565777 | 410..19 | 1960 | 100 | Minus |
2R | 25286936 | 2R | 17564907..17565103 | 766..570 | 970 | 99.5 | Minus |
2R | 25286936 | 2R | 17565164..17565324 | 569..409 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:39:25 has no hits.
BO14355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:30 Download gff for
BO14355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:20 Download gff for
BO14355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:54:14 Download gff for
BO14355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1262 | 19..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:31 Download gff for
BO14355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1262 | 19..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:31 Download gff for
BO14355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17564900..17565103 | 570..772 | 98 | -> | Minus |
2R | 17565164..17565324 | 409..569 | 100 | -> | Minus |
2R | 17565388..17565777 | 19..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:54:14 Download gff for
BO14355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452405..13452608 | 570..772 | 98 | -> | Minus |
arm_2R | 13452669..13452829 | 409..569 | 100 | -> | Minus |
arm_2R | 13452893..13453282 | 19..408 | 100 | | Minus |
BO14355.5prime Sequence
780 bp (725 high quality bases) assembled on 2006-05-29
> BO14355.5prime
GAAGTTATCAGTCGACATGAGTTCGGGCTTTGTGACTGAAGCTGAGGCGA
CCGAGCAAAGGCAGAGACGTCAGGAGGAATGGGAGCGTGTACGCCAGCCG
GAGGATCCACTAGAACGACCTGAGGAACCCTACGATGGGCGCTCACTTTA
TGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAG
CCCACAAGCTGAAAAACCTCATCCGTGGTCTGGACGATGATGAGGTGCAG
TTTCTGGAATTGGTCGATGCCCATAAAATACACGCGGAGCGCCAGCAAAT
GCGCGACGAGGAGCTAGAACTAAAGGATTTTCGCAATCGTGTGGAAAAGC
TGCAGGAGGAGAGTGTAGACAAGAAACTGCAAGCTGAACTAAAAACCACA
GCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAGCACTCAGAAGACGCTGCT
CGGCCAGGGCATCAAGAGAAAAAACGGCGAACTGCCCACCACCAGTAAAG
TAGCCAAAATCACTGAGAATGAGGTCGAACAGACAGCGACAAATGAAGCA
ACCAAGGACCCTGCTGATAAGACAACGAACACCACATTAATTACAAACAA
ATACAACCAGGGGGCCCTAAAGTGCATCGCTATACTTCCGGGCATCGGCT
CCTACACGGAGTCTAGTGACTCGGAGGCCAGCACCGATGAGGAGGAACCC
AGTATGTGCAGCCGAACCGACTTATGTGGCCCGCAAATTCCCAAGAAGAA
GCAGTGCTCAGAGGCAAGCTTTCTAGACCA
BO14355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PA | 750 | CG14480-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
CG14480-PA | 750 | CG14480-RA | 719..747 | 735..763 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 875 | CG14480-RB | 53..800 | 16..763 | 3695 | 99.7 | Plus |
CG14480-RA | 1337 | CG14480-RA | 515..1262 | 16..763 | 3695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565777 | 372..763 | 1915 | 99.2 | Plus |
2R | 25286936 | 2R | 17564907..17565103 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17565164..17565324 | 213..373 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:10:24 has no hits.
BO14355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:31 Download gff for
BO14355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:21 Download gff for
BO14355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:42:08 Download gff for
BO14355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1262 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:58 Download gff for
BO14355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1262 | 10..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:58 Download gff for
BO14355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565164..17565324 | 213..373 | 100 | -> | Plus |
2R | 17564900..17565103 | 10..212 | 98 | -> | Plus |
2R | 17565388..17565777 | 374..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:42:08 Download gff for
BO14355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452669..13452829 | 213..373 | 100 | -> | Plus |
arm_2R | 13452405..13452608 | 10..212 | 98 | -> | Plus |
arm_2R | 13452893..13453282 | 374..763 | 99 | | Plus |
BO14355.complete Sequence
781 bp assembled on 2006-10-11
GenBank Submission: FJ633098
> BO14355.complete
GAAGTTATCAGTCGACATGAGTTCGGGCTTTGTGACTGAAGCTGAGGCGA
CCGAGCAAAGGCAGAGACGTCAGGAGGAATGGGAGCGTGTACGCCAGCCG
GAGGATCCACTAGAACGACCTGAGGAACCCTACGATGGGCGCTCACTTTA
TGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAG
CCCACAAGCTGAAAAACCTCATCCGTGGTCTGGACGATGATGAGGTGCAG
TTTCTGGAATTGGTCGATGCCCATAAAATACACGCGGAGCGCCAGCAAAT
GCGCGACGAGGAGCTAGAACTAAAGGATTTTCGCAATCGTGTGGAAAAGC
TGCAGGAGGAGAGTGTAGACAAGAAACTGCAAGCTGAACTAAAAACCACA
GCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAGCACTCAGAAGACGCTGCT
CGGCCAGGGCATCAAGAGAAAAAACGGCGAACTGCCCACCACCAGTAAAG
TAGCCAAAATCACTGAGAATGAGGTCGAACAGACAGCGACAAATGAAGCA
ACCAAGGACCCTGCTGATAAGACAACGAACACCACATTAATTACAAACAA
ATACAACCAGGGGGCCCTAAAGTGCATCGCTATACTTCCGGGCATCGGCT
CCTACACGGAGTCTAGTGACTCGGAGGCCAGCACCGATGAGGAGGAACCC
AGTATGTGCAGCCGAACCGACTTATGTGGCCGCAAAATTCCCAAGAAGAA
GCAGTGCTCAGAGGCAAGCTTTCTAGACCAT
BO14355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 750 | CG14480-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG14480-RA | 750 | CG14480-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 875 | CG14480-RB | 53..800 | 16..763 | 3740 | 100 | Plus |
CG14480-RA | 1337 | CG14480-RA | 515..1262 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565777 | 372..763 | 1960 | 100 | Plus |
2R | 25286936 | 2R | 17564907..17565103 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17565164..17565324 | 213..373 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:18:17 has no hits.
BO14355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:42 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:52 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1262 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:40 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 516..1262 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:42 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1262 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:26 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 516..1262 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:26 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17564908..17565103 | 17..212 | 100 | -> | Plus |
2R | 17565164..17565324 | 213..373 | 100 | -> | Plus |
2R | 17565388..17565777 | 374..765 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:40 Download gff for
BO14355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452413..13452608 | 17..212 | 100 | -> | Plus |
arm_2R | 13452669..13452829 | 213..373 | 100 | -> | Plus |
arm_2R | 13452893..13453282 | 374..765 | 99 | | Plus |
BO14355.pep Sequence
Translation from 16 to 781
> BO14355.pep
MSSGFVTEAEATEQRQRRQEEWERVRQPEDPLERPEEPYDGRSLYERLKQ
NKDKKDMEFEEAHKLKNLIRGLDDDEVQFLELVDAHKIHAERQQMRDEEL
ELKDFRNRVEKLQEESVDKKLQAELKTTAKSAGASVGRSTQKTLLGQGIK
RKNGELPTTSKVAKITENEVEQTATNEATKDPADKTTNTTLITNKYNQGA
LKCIAILPGIGSYTESSDSEASTDEEEPSMCSRTDLCGRKIPKKKQCSEA
SFLDH
BO14355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PB | 249 | CG14480-PB | 1..249 | 1..249 | 1273 | 100 | Plus |
CG14480-PA | 249 | CG14480-PA | 1..249 | 1..249 | 1273 | 100 | Plus |