Clone Sequence Records
BO14358.3prime Sequence
760 bp (712 high quality bases) assembled on 2006-05-29
> BO14358.3prime
ATGGTCTAGAAAGCTTGCTGCTTGTGGATAGTCGGTTCCAAAGAGTTTGT
TACAAACTAATGCGGCTACTTTGCGGCGTGCATCTTTTTTGGTTGGCCCA
TCAGCCTTAAACTCGCAGTTGTCCACGGAGACGCCCATTGAGAAAACTTT
ACGGTTTTCACCAGAGCTACCTAAAAATTTGAAGGTGGTCTGGGGGCGCA
TTTGCATCAGAACCATGCAAGGGTGCATATTCTTCCATAATTTGGGCAAC
TGTCCAACTGACGACGACGTCTTCTTGTTCTTTACGTCATTATACAGGGC
TGCAACATCAATAGCGTCGCTGTTCCATTTCTCAGCAAGTTTGTAAACGG
CATAAGAGGTCATCTTTTCGAGTATATTATCTTCATCGCCTCCCGAGCTG
TTTTCTGGCTCGGCCAACAGAGCTTTCATTTTGGTGGTTAGGATTTCTCG
CAGAGCCTTCTCGCAAGCTGCATTCCCTGCAGAGTTTTCTGAAGAACCCT
CCGCATCGTATTTCTTTGAGTTAACAACAATGTTAGCCACATTCTTCCCC
TCGTGGTCTTGTTTTATTTGCATGTTGTCGATTATCACGCCCTTTAACTC
TTTCAAAACCATAAGGGCATCCTTGGAGGTCACGGCCTTGGGCAACGGGC
GAACAAGACGATCCTTGGCTTTTTGGGAACGTTTCAATTTCTTTACCTTC
TTCTTTTTCTTCTTAAGGTCGCTGGTTGCCATGGCAGCGTCATCAGGGAT
CTTTGACATA
BO14358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-PA | 891 | CG12493-RA | 147..888 | 760..19 | 3685 | 99.8 | Minus |
CG10630-PA | 975 | CG10630-RA | 452..568 | 530..414 | 385 | 93.1 | Minus |
CG10630-PA | 975 | CG10630-RA | 329..434 | 653..548 | 330 | 92.4 | Minus |
CG10630-PA | 975 | CG10630-RA | 931..969 | 60..22 | 170 | 97.4 | Minus |
CG10630-PA | 975 | CG10630-RA | 593..659 | 389..323 | 160 | 89.5 | Minus |
CG10630-PA | 975 | CG10630-RA | 750..779 | 238..209 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RB | 1164 | CG12493-RB | 263..1004 | 760..19 | 3695 | 99.9 | Minus |
CG12493-RA | 1173 | CG12493-RA | 272..1013 | 760..19 | 3695 | 99.9 | Minus |
blanks-RA | 1268 | CG10630-RA | 439..1079 | 653..22 | 1660 | 84.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4752553..4753294 | 19..760 | 3695 | 99.9 | Plus |
3L | 28110227 | 3L | 5497712..5498352 | 22..653 | 1555 | 83.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:55:13 has no hits.
BO14358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:37 Download gff for
BO14358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-PA | 148..891 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:28 Download gff for
BO14358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-PA | 148..891 | 15..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:25 Download gff for
BO14358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 273..1018 | 13..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:57 Download gff for
BO14358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 273..1018 | 13..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:57 Download gff for
BO14358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4752548..4753293 | 13..759 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:25 Download gff for
BO14358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4752548..4753293 | 13..759 | 99 | | Plus |
BO14358.5prime Sequence
847 bp (807 high quality bases) assembled on 2006-05-29
> BO14358.5prime
GAAGTTATCAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCG
TAAATGTTTCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAA
ACTGCAATGGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCAC
TGATGGCGATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCA
GCGACCCTAAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAA
AAAGCCAAGGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAA
GGATGCCCTTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACA
TGCAAATAAAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTT
AACTCAAAGAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAA
TGCAGCTTGCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAG
CTCTGTTGGCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATA
CTCGAAAAGATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAA
CAGCGACGCTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGA
AGACGTCGTCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCAC
CCTTGCATGGTTCTGATGCAAATGCGCCCCCAGACCACCTTCAAATTTTT
AGGTAGCTCTGGTGAAAACCGTAAAGTTTTCTCAATGGGCGTCTCCGTGG
ACAACTGCGAGTTTAAGGCTGATGGGCCAACCCAAAAAGATGCACGC
BO14358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-PA | 891 | CG12493-RA | 1..831 | 17..847 | 4130 | 99.8 | Plus |
CG10630-PA | 975 | CG10630-RA | 452..568 | 393..509 | 385 | 93.1 | Plus |
CG10630-PA | 975 | CG10630-RA | 329..434 | 270..375 | 330 | 92.4 | Plus |
CG10630-PA | 975 | CG10630-RA | 593..659 | 534..600 | 160 | 89.5 | Plus |
CG10630-PA | 975 | CG10630-RA | 750..779 | 685..714 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RA | 1173 | CG12493-RA | 126..956 | 17..847 | 4140 | 99.9 | Plus |
CG12493-RB | 1164 | CG12493-RB | 126..947 | 17..847 | 3995 | 98.8 | Plus |
blanks-RA | 1268 | CG10630-RA | 439..1007 | 270..829 | 1495 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4752610..4753372 | 847..85 | 3800 | 99.9 | Minus |
3L | 28110227 | 3L | 5497784..5498352 | 829..270 | 1390 | 84.2 | Minus |
3L | 28110227 | 3L | 4753544..4753613 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:10:35 has no hits.
BO14358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:38 Download gff for
BO14358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:30 Download gff for
BO14358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:17 Download gff for
BO14358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 116..956 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:32 Download gff for
BO14358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 116..956 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:32 Download gff for
BO14358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4752610..4753370 | 87..847 | 99 | <- | Minus |
3L | 4753544..4753623 | 7..86 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:17 Download gff for
BO14358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4752610..4753370 | 87..847 | 99 | <- | Minus |
arm_3L | 4753544..4753623 | 7..86 | 95 | | Minus |
BO14358.complete Sequence
922 bp assembled on 2006-10-11
GenBank Submission: FJ633100
> BO14358.complete
GAAGTTATCAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCG
TAAATGTTTCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAA
ACTGCAATGGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCAC
TGATGGCGATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCA
GCGACCCTAAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAA
AAAGCCAAGGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAA
GGATGCCCTTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACA
TGCAAATAAAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTT
AACTCAAAGAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAA
TGCAGCTTGCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAG
CTCTGTTGGCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATA
CTCGAAAAGATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAA
CAGCGACGCTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGA
AGACGTCGTCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCAC
CCTTGCATGGTTCTGATGCAAATGCGCCCCCAGACCACCTTCAAATTTTT
AGGTAGCTCTGGTGAAAACCGTAAAGTTTTCTCAATGGGCGTCTCCGTGG
ACAACTGCGAGTTTAAGGCTGATGGGCCAACCAAAAAAGATGCACGCCGC
AAAGTAGCCGCATTAGTTTGTAACAAACTCTTTGGAACCGACTATCCACA
AGCAGCAAGCTTTCTAGACCAT
BO14358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RA | 891 | CG12493-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
CG12493-RB | 882 | CG12493-PB | 1..879 | 17..904 | 4270 | 99 | Plus |
blanks-RA | 975 | CG10630-PA | 329..969 | 270..901 | 1555 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-RA | 1173 | CG12493-RA | 126..1013 | 17..904 | 4440 | 100 | Plus |
CG12493-RB | 1164 | CG12493-RB | 126..1004 | 17..904 | 4270 | 99 | Plus |
blanks-RA | 1268 | CG10630-RA | 439..1079 | 270..901 | 1555 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4752553..4753372 | 904..85 | 4100 | 100 | Minus |
3L | 28110227 | 3L | 5497712..5498352 | 901..270 | 1555 | 83.9 | Minus |
3L | 28110227 | 3L | 4753544..4753613 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:35 has no hits.
BO14358.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:01 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 1..891 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:59 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 96..998 | 7..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:43 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 126..1013 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:02 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 96..998 | 7..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:53 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12493-RA | 126..1013 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:53 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4752551..4753370 | 87..906 | 99 | <- | Minus |
3L | 4753544..4753613 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:43 Download gff for
BO14358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4752551..4753370 | 87..906 | 99 | <- | Minus |
arm_3L | 4753544..4753613 | 17..86 | 100 | | Minus |
BO14358.pep Sequence
Translation from 16 to 922
> BO14358.pep
MAIDDMKDLLIVNVSDQEDAGMSDDLKETAMDCNMPDGESSLVITDGDSM
SKIPDDAAMATSDPKKKKKKVKKLKRSQKAKDRLVRPLPKAVTSKDALMV
LKELKGVIIDNMQIKQDHEGKNVANIVVNSKKYDAEGSSENSAGNAACEK
ALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAID
VAALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMRPQTTFKFLGSSGE
NRKVFSMGVSVDNCEFKADGPTKKDARRKVAALVCNKLFGTDYPQAASFL
DH
BO14358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12493-PA | 296 | CG12493-PA | 1..296 | 1..296 | 1509 | 100 | Plus |
CG12493-PB | 293 | CG12493-PB | 1..293 | 1..296 | 1480 | 99 | Plus |
blanks-PA | 324 | CG10630-PA | 18..323 | 5..295 | 795 | 56.4 | Plus |
DIP1-PI | 378 | CG17686-PI | 49..372 | 11..293 | 362 | 32.1 | Plus |
DIP1-PG | 378 | CG17686-PG | 49..372 | 11..293 | 362 | 32.1 | Plus |