Clone Sequence Records
BO14359.3prime Sequence
812 bp (733 high quality bases) assembled on 2006-05-29
> BO14359.3prime
ATGGTCTAGAAAGCTTGCAGAAGTATCTACGATTGGAAACGCTATAGTTT
TGATCTTTCCGCCAATGACGTGGACTTCATAGTGAATGTTCTTAACGATT
ATAACTGTGGTGGTCGGTTGAGCTGGCAGTTTTGGAACCTTGATGGATTC
CTTGGTGCAGTTGAAGGTCCACTGGTCCACCGTGGGCACTCTGGTGAGCA
GGTCGAAGCACTGGGCCAACTTGGCTGACCACACGGTAATACAGTCGAAA
TTCAGACCTTCGCGCGAATGCAACTTAACCACTTCATTCATATTGCGAAA
GGTGCTCATAGTCATTATGGCCGTGGGCTTGCCACCGAAATAGAATTGGG
GGAAATCCAAGACTATCAAAGGGGATCCCTTCATCCGGCGACCATAACGC
TTCTTCGTATCCGACTCCTCGAACTCCTCGATGTGAATGGTGGAGCAGTT
CATTCGATCGATGAGCTTCACTGTCTTCAGGTAATTGGGATGGTGTTGGA
TGCGCTCGCTCATCGGCTTCAAGTTGGCTCGTATTCTCTTAATCATCTCG
TCCCGTATGGACTCCTCGACCAGAACACTGGCCACCAGTCCAGTTCCAAT
CGGATGGATCATGTCCGAGACTATGGCCTCTATAACCTGATCCATATCCC
CACTGGCGAACAGAACCATCATGCGCGGAAGGATCCACGACTTGTGGCTT
CCATCCTCCGGATATCTGTGGGCATGTCGCGAGAGTAGGGACAAGTAGAT
GTCCCCGATCACCTCCTCCTCGTTTGGATGGGCTGAATGGTCGGTCATGT
CGACTGATAACT
BO14359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-PA | 783 | CG13539-RA | 1..780 | 798..19 | 3825 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 1099 | CG13539-RB | 278..1057 | 798..19 | 3855 | 99.6 | Minus |
CG13539-RA | 881 | CG13539-RA | 60..839 | 798..19 | 3855 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23184467..23185246 | 798..19 | 3855 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:03:52 has no hits.
BO14359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:39 Download gff for
BO14359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-PA | 1..783 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:31 Download gff for
BO14359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-PA | 1..783 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:10:25 Download gff for
BO14359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 12..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:05 Download gff for
BO14359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 12..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:05 Download gff for
BO14359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23184467..23185252 | 12..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:10:25 Download gff for
BO14359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19071990..19072775 | 12..798 | 99 | | Minus |
BO14359.5prime Sequence
812 bp (753 high quality bases) assembled on 2006-05-29
> BO14359.5prime
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCATCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCACTATGAAGTCCACGTCAT
TGGCGGAAAGATCAAAACTATAGCGTTTCCAATCGTAGATACTTCTGCAA
GCTTTCTAGACC
BO14359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-PA | 783 | CG13539-RA | 1..780 | 17..796 | 3825 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 1099 | CG13539-RB | 278..1057 | 17..796 | 3855 | 99.6 | Plus |
CG13539-RA | 881 | CG13539-RA | 60..839 | 17..796 | 3855 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23184467..23185246 | 17..796 | 3855 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:37:37 has no hits.
BO14359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:40 Download gff for
BO14359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:33 Download gff for
BO14359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:35 Download gff for
BO14359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:30 Download gff for
BO14359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 17..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:30 Download gff for
BO14359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23184467..23185252 | 17..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:35 Download gff for
BO14359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19071990..19072775 | 17..803 | 99 | | Plus |
BO14359.complete Sequence
814 bp assembled on 2006-10-11
GenBank Submission: FJ633101
> BO14359.complete
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCATCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCACTATGAAGTCCACGTCAT
TGGCGGAAAGATCAAAACTATAGCGTTTCCAATCGTAGATACTTCTGCAA
GCTTTCTAGACCAT
BO14359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 783 | CG13539-PB | 1..780 | 17..796 | 3855 | 99.6 | Plus |
CG13539-RA | 783 | CG13539-PA | 1..780 | 17..796 | 3855 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 1099 | CG13539-RB | 278..1057 | 17..796 | 3855 | 99.6 | Plus |
CG13539-RA | 881 | CG13539-RA | 60..839 | 17..796 | 3855 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23184467..23185246 | 17..796 | 3855 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:12:26 has no hits.
BO14359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:05 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:01 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:49 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..839 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:06 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:11 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..839 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:11 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23184467..23185246 | 17..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:49 Download gff for
BO14359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19071990..19072769 | 17..798 | 99 | | Plus |
BO14359.pep Sequence
Translation from 16 to 814
> BO14359.pep
MTDHSAHPNEEEVIGDIYLSLLSRHAHRYPEDGSHKSWILPRMMVLFASG
DMDQVIEAIVSDMIHPIGTGLVASVLVEESIRDEMIKRIRANLKPMSERI
QHHPNYLKTVKLIDRMNCSTIHIEEFEESDTKKRYGRRMKGSPLIVLDFP
QFYFGGKPTAIMTMSTFRNMNEVVKLHSREGLNFDCITVWSAKLAQCFDL
LTRVPTVDQWTFNCTKESIKVPKLPAQPTTTVIIVKNIHYEVHVIGGKIK
TIAFPIVDTSASFLDH
BO14359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-PB | 260 | CG13539-PB | 1..260 | 1..260 | 1363 | 100 | Plus |
CG13539-PA | 260 | CG13539-PA | 1..260 | 1..260 | 1363 | 100 | Plus |
CG15717-PE | 252 | CG15717-PE | 35..246 | 34..256 | 301 | 28.1 | Plus |
CG15717-PC | 252 | CG15717-PC | 35..246 | 34..256 | 301 | 28.1 | Plus |
CG15717-PA | 252 | CG15717-PA | 35..246 | 34..256 | 301 | 28.1 | Plus |