Clone BO14359 Report

Search the DGRC for BO14359

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG13539-RA
Protein status:BO14359.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO14359.3prime Sequence

812 bp (733 high quality bases) assembled on 2006-05-29

> BO14359.3prime
ATGGTCTAGAAAGCTTGCAGAAGTATCTACGATTGGAAACGCTATAGTTT
TGATCTTTCCGCCAATGACGTGGACTTCATAGTGAATGTTCTTAACGATT
ATAACTGTGGTGGTCGGTTGAGCTGGCAGTTTTGGAACCTTGATGGATTC
CTTGGTGCAGTTGAAGGTCCACTGGTCCACCGTGGGCACTCTGGTGAGCA
GGTCGAAGCACTGGGCCAACTTGGCTGACCACACGGTAATACAGTCGAAA
TTCAGACCTTCGCGCGAATGCAACTTAACCACTTCATTCATATTGCGAAA
GGTGCTCATAGTCATTATGGCCGTGGGCTTGCCACCGAAATAGAATTGGG
GGAAATCCAAGACTATCAAAGGGGATCCCTTCATCCGGCGACCATAACGC
TTCTTCGTATCCGACTCCTCGAACTCCTCGATGTGAATGGTGGAGCAGTT
CATTCGATCGATGAGCTTCACTGTCTTCAGGTAATTGGGATGGTGTTGGA
TGCGCTCGCTCATCGGCTTCAAGTTGGCTCGTATTCTCTTAATCATCTCG
TCCCGTATGGACTCCTCGACCAGAACACTGGCCACCAGTCCAGTTCCAAT
CGGATGGATCATGTCCGAGACTATGGCCTCTATAACCTGATCCATATCCC
CACTGGCGAACAGAACCATCATGCGCGGAAGGATCCACGACTTGTGGCTT
CCATCCTCCGGATATCTGTGGGCATGTCGCGAGAGTAGGGACAAGTAGAT
GTCCCCGATCACCTCCTCCTCGTTTGGATGGGCTGAATGGTCGGTCATGT
CGACTGATAACT

BO14359.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-PA 783 CG13539-RA 1..780 798..19 3825 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 1099 CG13539-RB 278..1057 798..19 3855 99.6 Minus
CG13539-RA 881 CG13539-RA 60..839 798..19 3855 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23184467..23185246 798..19 3855 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 12:03:52 has no hits.

BO14359.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:39 Download gff for BO14359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-PA 1..783 16..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:31 Download gff for BO14359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-PA 1..783 16..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:10:25 Download gff for BO14359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 12..798 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:05 Download gff for BO14359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 12..798 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:05 Download gff for BO14359.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23184467..23185252 12..798 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:10:25 Download gff for BO14359.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19071990..19072775 12..798 99   Minus

BO14359.5prime Sequence

812 bp (753 high quality bases) assembled on 2006-05-29

> BO14359.5prime
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCATCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCACTATGAAGTCCACGTCAT
TGGCGGAAAGATCAAAACTATAGCGTTTCCAATCGTAGATACTTCTGCAA
GCTTTCTAGACC

BO14359.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-PA 783 CG13539-RA 1..780 17..796 3825 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 1099 CG13539-RB 278..1057 17..796 3855 99.6 Plus
CG13539-RA 881 CG13539-RA 60..839 17..796 3855 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23184467..23185246 17..796 3855 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 20:37:37 has no hits.

BO14359.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:40 Download gff for BO14359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:33 Download gff for BO14359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:35 Download gff for BO14359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 17..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:30 Download gff for BO14359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 17..803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:30 Download gff for BO14359.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23184467..23185252 17..803 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:35 Download gff for BO14359.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19071990..19072775 17..803 99   Plus

BO14359.complete Sequence

814 bp assembled on 2006-10-11

GenBank Submission: FJ633101

> BO14359.complete
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCATCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCACTATGAAGTCCACGTCAT
TGGCGGAAAGATCAAAACTATAGCGTTTCCAATCGTAGATACTTCTGCAA
GCTTTCTAGACCAT

BO14359.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 783 CG13539-PB 1..780 17..796 3855 99.6 Plus
CG13539-RA 783 CG13539-PA 1..780 17..796 3855 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 1099 CG13539-RB 278..1057 17..796 3855 99.6 Plus
CG13539-RA 881 CG13539-RA 60..839 17..796 3855 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23184467..23185246 17..796 3855 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:12:26 has no hits.

BO14359.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:05 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:01 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:49 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..839 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:06 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 17..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:11 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..839 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:11 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23184467..23185246 17..798 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:49 Download gff for BO14359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19071990..19072769 17..798 99   Plus

BO14359.pep Sequence

Translation from 16 to 814

> BO14359.pep
MTDHSAHPNEEEVIGDIYLSLLSRHAHRYPEDGSHKSWILPRMMVLFASG
DMDQVIEAIVSDMIHPIGTGLVASVLVEESIRDEMIKRIRANLKPMSERI
QHHPNYLKTVKLIDRMNCSTIHIEEFEESDTKKRYGRRMKGSPLIVLDFP
QFYFGGKPTAIMTMSTFRNMNEVVKLHSREGLNFDCITVWSAKLAQCFDL
LTRVPTVDQWTFNCTKESIKVPKLPAQPTTTVIIVKNIHYEVHVIGGKIK
TIAFPIVDTSASFLDH

BO14359.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-PB 260 CG13539-PB 1..260 1..260 1363 100 Plus
CG13539-PA 260 CG13539-PA 1..260 1..260 1363 100 Plus
CG15717-PE 252 CG15717-PE 35..246 34..256 301 28.1 Plus
CG15717-PC 252 CG15717-PC 35..246 34..256 301 28.1 Plus
CG15717-PA 252 CG15717-PA 35..246 34..256 301 28.1 Plus