Clone Sequence Records
BO14360.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-29
> BO14360.5prime
GAAGTTATCAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAAC
TTTTCCAGATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGA
CTTATGGTCGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACC
CATATACTTCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGG
AGGTTAGCCCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGG
AAGAAGCTGTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTG
CCAAACATATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTC
TGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACT
ATGAAGACCGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCG
CCAGTCGGCCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTA
CTGGACTAGCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGGCAAGC
TTTCTAGACC
BO14360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-PA | 531 | CG10396-RA | 1..528 | 17..544 | 2615 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-RA | 667 | CG10396-RA | 63..596 | 11..544 | 2640 | 99.6 | Plus |
| CG10396-RB | 672 | CG10396-RB | 113..601 | 56..544 | 2430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5354119..5354652 | 11..544 | 2640 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:48:45 has no hits.
BO14360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:42 Download gff for
BO14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-PA | 1..531 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:35 Download gff for
BO14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-PA | 1..531 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:23 Download gff for
BO14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 63..600 | 11..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:53 Download gff for
BO14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 63..600 | 11..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:53 Download gff for
BO14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5354119..5354656 | 11..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:23 Download gff for
BO14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1241624..1242161 | 11..550 | 99 | | Plus |
BO14360.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-29
> BO14360.3prime
ATGGTCTAGAAAGCTTGCCTTCCACTTGTTCTCTCGGTAGCACCATTTGG
ACGCTAGTCCAGTAATTGGGTTCATTTGCAGCTGGATGATGCGCCGCAAT
TGGGCCGACTGGCGCTCATCGTTAAACGTATCCGGCAGTTTTCCATAGAG
AACGGTCTTCATAGTTATCGATATCGCGATTCCGATTGACACAAGCCACA
AAGCGACGCCCAGACACATCTTCCATTCGGGTGTAATGTGCTGGAATTCT
GCATATGTTTGGCAGAAGCTATATCGGTATAATTGCTTCTTTTCATCCAG
CGACAGCTTCTTCCAGTCGTCCAACTCCTTTTCACGTAGGGCACACAACT
CTGGGCTAACCTCCCGATATCGAATAGCCGGAAAAGGGCAGTCCGGACTA
TCGAAGTATATGGGTCGCCCATTGATTCCATGACCAACGACCTGGCGATC
GGCGACCATAAGTCGAATACCATCTCCTCCACTGGCAAACCGACGCCTCG
TCATCTGGAAAAGTTTCCTCAATTTCATACAGGGAAATAAGCTCATGTCG
ACTGATAACT
BO14360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-PA | 531 | CG10396-RA | 1..528 | 546..19 | 2615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-RA | 667 | CG10396-RA | 63..596 | 552..19 | 2640 | 99.6 | Minus |
| CG10396-RB | 672 | CG10396-RB | 113..601 | 507..19 | 2430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5354119..5354652 | 552..19 | 2640 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:55:08 has no hits.
BO14360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:25:41 Download gff for
BO14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-PA | 1..531 | 18..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:20:34 Download gff for
BO14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-PA | 1..531 | 18..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:55:23 Download gff for
BO14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 63..600 | 13..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:41 Download gff for
BO14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 63..600 | 13..552 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:41 Download gff for
BO14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5354119..5354656 | 13..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:55:23 Download gff for
BO14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1241624..1242161 | 13..552 | 99 | | Minus |
BO14360.complete Sequence
562 bp assembled on 2006-10-11
GenBank Submission: FJ633102
> BO14360.complete
GAAGTTATCAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAAC
TTTTCCAGATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGA
CTTATGGTCGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACC
CATATACTTCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGG
AGGTTAGCCCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGG
AAGAAGCTGTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTG
CCAAACATATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTC
TGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACT
ATGAAGACCGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCG
CCAGTCGGCCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTA
CTGGACTAGCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGGCAAGC
TTTCTAGACCAT
BO14360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-RA | 531 | CG10396-PA | 1..528 | 17..544 | 2625 | 99.8 | Plus |
| CG10396-RB | 489 | CG10396-PB | 1..486 | 59..544 | 2415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-RA | 667 | CG10396-RA | 63..596 | 11..544 | 2640 | 99.6 | Plus |
| CG10396-RB | 672 | CG10396-RB | 113..601 | 56..544 | 2430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5354119..5354652 | 11..544 | 2640 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:10:46 has no hits.
BO14360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:59 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 1..531 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:55 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 63..600 | 11..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:02 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 69..596 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:00 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 63..600 | 11..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:36 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 69..596 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:36 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5354125..5354652 | 17..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:02 Download gff for
BO14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1241630..1242157 | 17..546 | 99 | | Plus |
BO14360.pep Sequence
Translation from 16 to 562
> BO14360.pep
MSLFPCMKLRKLFQMTRRRFASGGDGIRLMVADRQVVGHGINGRPIYFDS
PDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRYSFCQTYAE
FQHITPEWKMCLGVALWLVSIGIAISITMKTVLYGKLPDTFNDERQSAQL
RRIIQLQMNPITGLASKWCYRENKWKASFLDH
BO14360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-PA | 176 | CG10396-PA | 1..176 | 1..176 | 947 | 100 | Plus |
| CG10396-PB | 162 | CG10396-PB | 1..162 | 15..176 | 873 | 100 | Plus |
| CoIV-PD | 182 | CG10664-PD | 36..181 | 31..176 | 391 | 51.4 | Plus |
| CoIV-PC | 182 | CG10664-PC | 36..181 | 31..176 | 391 | 51.4 | Plus |
| CoIV-PB | 182 | CG10664-PB | 36..181 | 31..176 | 391 | 51.4 | Plus |
