Clone Sequence Records
BO14373.3prime Sequence
757 bp (733 high quality bases) assembled on 2006-05-29
> BO14373.3prime
ATGGTCTAGAAAGCTTGCAACTGGATTGCCTTCTGGTGGCACTGCGCTCC
ATCGCCTATGGGTCTCCCTTTCCATCCGCTTCTGCCTGGCCATCAGCGCA
TTCACCTCGCGATCCATTTCCAGCGGCGGGACAACTGCGATCTCTGCGTA
ATTGGGCAAGGTAGTGCACACCCTGTTCGCACAGGCTTTCTGGAATTGCT
TGGTTAGATCGTCGGAAATGTTGGCCACACACAAATTGGTTAATAAGTCA
AAGGCTGTGACTTTGAGGGCTTCAAATTGCTTTCGTGTCTTTCCCGTCAC
TTGCTTCCTTATTATTTTCTTCATTGTGATGGACCCCGAAGACAATTTTC
TAGGATCATGGACAGCTAGCGTCTTTTTGGTGTCAACTATCAGTTTGCGA
TTACGCACTTCCACCTTCATGGTGGGAGACGGCACCTTGGTGGATGATAC
CCACGAGCTCTTTTTCTTCTTCTGAAGAGGAGACCACACTGGTGTGGCCT
TTGCTTTGCTGGCGGTTTCCACTCGTTTACGAGTATATGTCCGTACGGCG
GTCAATTTGGGCTTAGTCTTGTTGATGGCGAGTTCCATCGCTTGGTGGTT
CTGCTCGGTTAGATTCTCTCTCGGCAAGACTGGCGGTGAGATCCCAGTCT
CATAGATGCTTGAGGGCGTAATGTTGTTACGGGCCGATTCGTTGGCATAG
ACGTTCTTGCTTGAAATTACTGGCTGTGATACCTCATTCTCAAAAAAACT
ATTATTT
BO14373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-PA | 1254 | CG8712-RA | 513..1251 | 757..19 | 3695 | 100 | Minus |
| CG8712-PB | 1254 | CG8712-RB | 513..1251 | 757..19 | 3695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-RB | 1693 | CG8712-RB | 677..1415 | 757..19 | 3695 | 100 | Minus |
| CG8712-RA | 1489 | CG8712-RA | 618..1356 | 757..19 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8097070..8097808 | 19..757 | 3695 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4129..4169 | 277..318 | 117 | 78.6 | Plus |
BO14373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:03 Download gff for
BO14373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-PA | 513..1254 | 15..757 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:06 Download gff for
BO14373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-PB | 513..1254 | 15..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:17:16 Download gff for
BO14373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RA | 618..1361 | 14..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:46:21 Download gff for
BO14373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RA | 618..1361 | 14..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:46:21 Download gff for
BO14373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8097065..8097808 | 14..757 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:17:16 Download gff for
BO14373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3984570..3985313 | 14..757 | 99 | | Plus |
BO14373.5prime Sequence
812 bp (781 high quality bases) assembled on 2006-05-29
> BO14373.5prime
GAAGTTATCAGTCGACATGCCGGCACTTACCCACCAAATCTTAACCATGC
AACGCGCACCACCACTGAATTTGAGCTTCAAGATTCAGCTGCTGTCCGGC
CAAAATGTTATCCTGGTGGAGTGTTCTGGCTACGAGAGCGAGCTGTTCTT
GCCGCAAATCGTTGGGGAGCGAATCACCATGCAGAACGTTATTCAAGATC
GAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGATCCCCCGATGGGCGAT
TTGGGCTCCGAAACCAGGACTGCGAAGAGTCCTCCACGGCGCTTCTTTGC
CGCTGCCAATCCCCCAACCCCACTGGCCAAGAGCACCCCGACGAATACAT
CTTCTTTAAGAGCTCGGGCTGGTAAGGAAAACGCTGTTCCGCAGCTAACG
CCAGAGGGTTTGCGATGCCGACCCTTTCACCTACCTGCACCGGTGGAAAT
GGACGTAGACCAATTGTGCTGCCAGGAGCAGACACCTGAGAGACGGGCAT
CCTCCAAGTCTATAAGTTCAGCTAATACAAATAATAGTTTTTTTGAGAAT
GAGGTATCACAGCCAGTAATTTCAAGCAAGAACGTCTATGCCAACGAATC
GGCCCGTAACAACATTACGCCCTCAAGCATCTATGAGACTGGGATCTCAC
CGCCAGTCTTGCCGAGAGAGAATCTAACCGAGCAGAACCACCAAGCGATG
GAACTCGCCATCAACAAGACTAAGCCCAAATTGACCGCCGTACGGACATA
TACTCGTAAACGAGTGGAAACCGCCAGCAAAGCAAAGGCCACACCAGTGT
GGTCTCCTCTTC
BO14373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-PA | 1254 | CG8712-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
| CG8712-PB | 1254 | CG8712-RB | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-RB | 1693 | CG8712-RB | 165..960 | 17..812 | 3980 | 100 | Plus |
| CG8712-RA | 1489 | CG8712-RA | 106..901 | 17..812 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8097525..8098320 | 812..17 | 3980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:51:09 has no hits.
BO14373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:04 Download gff for
BO14373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:07 Download gff for
BO14373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-PB | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:50 Download gff for
BO14373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RA | 100..901 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:52 Download gff for
BO14373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RA | 100..901 | 10..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:52 Download gff for
BO14373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8097525..8098326 | 10..812 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:50 Download gff for
BO14373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3985030..3985831 | 10..812 | 99 | | Minus |
BO14373.complete Sequence
1285 bp assembled on 2006-10-11
GenBank Submission: FJ633103
> BO14373.complete
GAAGTTATCAGTCGACATGCCGGCACTTACCCACCAAATCTTAACCATGC
AACGCGCACCACCACTGAATTTGAGCTTCAAGATTCAGCTGCTGTCCGGC
CAAAATGTTATCCTGGTGGAGTGTTCTGGCTACGAGAGCGAGCTGTTCTT
GCCGCAAATCGTTGGGGAGCGAATCACCATGCAGAACGTTATTCAAGATC
GAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGATCCCCCGATGGGCGAT
TTGGGCTCCGAAACCAGGACTGCGAAGAGTCCTCCACGGCGCTTCTTTGC
CGCTGCCAATCCCCCAACCCCACTGGCCAAGAGCACCCCGACGAATACAT
CTTCTTTAAGAGCTCGGGCTGGTAAGGAAAACGCTGTTCCGCAGCTAACG
CCAGAGGGTTTGCGATGCCGACCCTTTCACCTACCTGCACCGGTGGAAAT
GGACGTAGACCAATTGTGCTGCCAGGAGCAGACACCTGAGAGACGGGCAT
CCTCCAAGTCTATAAGTTCAGCTAATACAAATAATAGTTTTTTTGAGAAT
GAGGTATCACAGCCAGTAATTTCAAGCAAGAACGTCTATGCCAACGAATC
GGCCCGTAACAACATTACGCCCTCAAGCATCTATGAGACTGGGATCTCAC
CGCCAGTCTTGCCGAGAGAGAATCTAACCGAGCAGAACCACCAAGCGATG
GAACTCGCCATCAACAAGACTAAGCCCAAATTGACCGCCGTACGGACATA
TACTCGTAAACGAGTGGAAACCGCCAGCAAAGCAAAGGCCACACCAGTGT
GGTCTCCTCTTCAGAAGAAGAAAAAGAGCTCGTGGGTATCATCCACCAAG
GTGCCGTCTCCCACCATGAAGGTGGAAGTGCGTAATCGCAAACTGATAGT
TGACACCAAAAAGACGCTAGCTGTCCATGATCCTAGAAAATTGTCTTCGG
GGTCCATCACAATGAAGAAAATAATAAGGAAGCAAGTGACGGGAAAGACA
CGAAAGCAATTTGAAGCCCTCAAAGTCACAGCCTTTGACTTATTAACCAA
TTTGTGTGTGGCCAACATTTCCGACGATCTAACCAAGCAATTCCAGAAAG
CCTGTGCGAACAGGGTGTGCACTACCTTGCCCAATTACGCAGAGATCGCA
GTTGTCCCGCCGCTGGAAATGGATCGCGAGGTGAATGCGCTGATGGCCAG
GCAGAAGCGGATGGAAAGGGAGACCCATAGGCGATGGAGCGCAGTGCCAC
CAGAAGGCAATCCAGTTGCAAGCTTTCTAGACCAT
BO14373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-RB | 1254 | CG8712-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| CG8712-RA | 1254 | CG8712-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-RB | 1693 | CG8712-RB | 165..1415 | 17..1267 | 6255 | 100 | Plus |
| CG8712-RA | 1489 | CG8712-RA | 106..1356 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8097070..8098320 | 1267..17 | 6255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4129..4169 | 1009..968 | 117 | 78.6 | Minus |
BO14373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:51 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RB | 1..1254 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:34 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RB | 129..1390 | 10..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:46 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RA | 106..1356 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:52 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RB | 129..1390 | 10..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:49 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8712-RA | 106..1356 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:49 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8097068..8098320 | 17..1269 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:46 Download gff for
BO14373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3984573..3985825 | 17..1269 | 99 | | Minus |
BO14373.pep Sequence
Translation from 16 to 1285
> BO14373.pep
MPALTHQILTMQRAPPLNLSFKIQLLSGQNVILVECSGYESELFLPQIVG
ERITMQNVIQDRRCCAESMLLRDPPMGDLGSETRTAKSPPRRFFAAANPP
TPLAKSTPTNTSSLRARAGKENAVPQLTPEGLRCRPFHLPAPVEMDVDQL
CCQEQTPERRASSKSISSANTNNSFFENEVSQPVISSKNVYANESARNNI
TPSSIYETGISPPVLPRENLTEQNHQAMELAINKTKPKLTAVRTYTRKRV
ETASKAKATPVWSPLQKKKKSSWVSSTKVPSPTMKVEVRNRKLIVDTKKT
LAVHDPRKLSSGSITMKKIIRKQVTGKTRKQFEALKVTAFDLLTNLCVAN
ISDDLTKQFQKACANRVCTTLPNYAEIAVVPPLEMDREVNALMARQKRME
RETHRRWSAVPPEGNPVASFLDH
BO14373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8712-PB | 417 | CG8712-PB | 1..417 | 1..417 | 2141 | 100 | Plus |
| CG8712-PA | 417 | CG8712-PA | 1..417 | 1..417 | 2141 | 100 | Plus |
