Clone Sequence Records
BO14377.3prime Sequence
798 bp (737 high quality bases) assembled on 2006-05-29
> BO14377.3prime
ATGGTCTAGAAAGCTTGCTTGTATTTTAATCATCGTTGGCTTCGTCCACT
TTTCACTGACTGCCCAAAGCCACTTTGCCGTTTGGGTGTCGGTGGCAGCC
GGCGCCATTTCCTTCAGTTTGCAGTCGCTGAAGTATTGTCCTGTCACCTT
TTCTAGCTCGGGATCCAGAGCAACATACAACGAGGTCTGAGCACCATTTC
TCGGAGTCTTAACAAAGGGCCAAAACAAAGGCTTAACAAAGAGTCCAGCA
AAAAAATTATTGAAGAATCCCATGTGCCTGATTATTTCTGTGTCCACCAC
ACCTGGATGCAGGGCATTCGCCGTTACGTTGGTGCCCTCTAATCGTTTGG
CCAACTCCCTTGTGAAGAGTACATTGGCCAACTTGCTCTGGCTGTAGGCC
TTGCCTTCATCGTAGGATTTGTCACTGTTCAGATCGCCAGTGTTTATTTC
TCCTCGAGTGTGTGCCAAACTGGATACATTTACAATCCGACTGGGTGAGG
ATTTCTTGAGTAGATCCAACAGTAAATTGGTAAGCAGGAAATGACCCATG
TGATTAACCCCCAGCTGAAGTTCGATGCCATCTGAGGTGAGAGATCTGGG
ACAGCGCATAACACCGGCGTTGTTGATCAGTACGTGCAGGTGCTCCTGTT
CCCTCTTGAAGGCGGCAACAAAGTGACGGATGGACTCCTGGGAAGCCAGG
TCACATTGCCGGCAGTACACATATTTGTTCTTCGTTTCCAGAACGATTTC
CTCGCGAGCCTCCTCACATTTCTTTAGGTTTCTGCATGCCATGTAAAC
BO14377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-PA | 996 | CG30491-RA | 217..993 | 795..19 | 3860 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-RB | 1088 | CG30491-RB | 239..1015 | 795..19 | 3870 | 99.9 | Minus |
| CG30491-RA | 1414 | CG30491-RA | 565..1341 | 795..19 | 3870 | 99.9 | Minus |
| CG2064-RA | 1210 | CG2064-RA | 421..825 | 694..290 | 435 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7656154..7656415 | 506..245 | 1310 | 100 | Minus |
| 2R | 25286936 | 2R | 7656471..7656697 | 245..19 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 7655944..7656100 | 661..505 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 7655792..7655891 | 761..662 | 485 | 99 | Minus |
| 2R | 25286936 | 2R | 7666696..7666901 | 495..290 | 280 | 75.7 | Minus |
| 2R | 25286936 | 2R | 7655701..7655737 | 795..759 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 19:11:27 has no hits.
BO14377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:10 Download gff for
BO14377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-PA | 214..996 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:15 Download gff for
BO14377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-PA | 214..996 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:06:42 Download gff for
BO14377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 562..1346 | 11..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:18:43 Download gff for
BO14377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 562..1346 | 11..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:18:43 Download gff for
BO14377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7655698..7655736 | 760..798 | 97 | -> | Minus |
| 2R | 7655794..7655891 | 662..759 | 98 | -> | Minus |
| 2R | 7655944..7656100 | 505..661 | 100 | -> | Minus |
| 2R | 7656156..7656415 | 245..504 | 100 | -> | Minus |
| 2R | 7656472..7656702 | 11..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:06:42 Download gff for
BO14377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3543203..3543241 | 760..798 | 97 | -> | Minus |
| arm_2R | 3543299..3543396 | 662..759 | 98 | -> | Minus |
| arm_2R | 3543449..3543605 | 505..661 | 100 | -> | Minus |
| arm_2R | 3543661..3543920 | 245..504 | 100 | -> | Minus |
| arm_2R | 3543977..3544207 | 11..244 | 98 | | Minus |
BO14377.5prime Sequence
748 bp (739 high quality bases) assembled on 2006-05-29
> BO14377.5prime
GAAGTTATCAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTG
CGTTCTGGCTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTG
AAGGATCTTATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGG
CAAGGTGTTTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGG
TGAGAGAGATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAAC
CTAAAGAAATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAA
CAAATATGTGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCC
GTCACTTTGTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTG
ATCAACAACGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGG
CATCGAACTTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCA
ATTTACTGTTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAAT
GTATCCAGTTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAA
CAGTGACAAATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGG
CCAATGTACTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAAC
GTAACGGCGAATGCCCTGCATCCAGGTGTGGTGGACACAGAAATAATC
BO14377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-PA | 996 | CG30491-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
| CG2065-PA | 903 | CG2065-RA | 32..92 | 141..201 | 230 | 95 | Plus |
| CG2064-PA | 993 | CG2064-RA | 119..178 | 141..200 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-RB | 1088 | CG30491-RB | 23..754 | 17..748 | 3660 | 100 | Plus |
| CG30491-RA | 1414 | CG30491-RA | 349..1080 | 17..748 | 3660 | 100 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 186..757 | 110..681 | 595 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7656154..7656380 | 522..748 | 1135 | 100 | Plus |
| 2R | 25286936 | 2R | 7655571..7655737 | 103..269 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 7655944..7656100 | 367..523 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 7655792..7655891 | 267..366 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 7655420..7655506 | 17..103 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 7664040..7664174 | 110..244 | 435 | 88.1 | Plus |
| 2R | 25286936 | 2R | 7666696..7666901 | 533..738 | 280 | 75.7 | Plus |
| 2R | 25286936 | 2R | 7666153..7666243 | 110..200 | 245 | 84.6 | Plus |
| 2R | 25286936 | 2R | 7662760..7662816 | 628..684 | 180 | 87.7 | Plus |
| 2R | 25286936 | 2R | 7662172..7662261 | 109..198 | 180 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:41:30 has no hits.
BO14377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:11 Download gff for
BO14377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:16 Download gff for
BO14377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:28 Download gff for
BO14377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1080 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:01 Download gff for
BO14377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1080 | 17..748 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:01 Download gff for
BO14377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7655420..7655505 | 17..102 | 100 | -> | Plus |
| 2R | 7655571..7655736 | 103..268 | 100 | -> | Plus |
| 2R | 7655794..7655891 | 269..366 | 100 | -> | Plus |
| 2R | 7655944..7656100 | 367..523 | 100 | -> | Plus |
| 2R | 7656156..7656380 | 524..748 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:28 Download gff for
BO14377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3542925..3543010 | 17..102 | 100 | -> | Plus |
| arm_2R | 3543076..3543241 | 103..268 | 100 | -> | Plus |
| arm_2R | 3543299..3543396 | 269..366 | 100 | -> | Plus |
| arm_2R | 3543449..3543605 | 367..523 | 100 | -> | Plus |
| arm_2R | 3543661..3543885 | 524..748 | 100 | | Plus |
BO14377.complete Sequence
1027 bp assembled on 2006-10-11
GenBank Submission: FJ633104
> BO14377.complete
GAAGTTATCAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTG
CGTTCTGGCTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTG
AAGGATCTTATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGG
CAAGGTGTTTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGG
TGAGAGAGATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAAC
CTAAAGAAATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAA
CAAATATGTGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCC
GTCACTTTGTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTG
ATCAACAACGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGG
CATCGAACTTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCA
ATTTACTGTTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAAT
GTATCCAGTTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAA
CAGTGACAAATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGG
CCAATGTACTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAAC
GTAACGGCGAATGCCCTGCATCCAGGTGTGGTGGACACAGAAATAATCAG
GCACATGGGATTCTTCAATAATTTTTTTGCTGGACTCTTTGTTAAGCCTT
TGTTTTGGCCCTTTGTTAAGACTCCGAGAAATGGTGCTCAGACCTCGTTG
TATGTTGCTCTGGATCCCGAGCTAGAAAAGGTGACAGGACAATACTTCAG
CGACTGCAAACTGAAGGAAATGGCGCCGGCTGCCACCGACACCCAAACGG
CAAAGTGGCTTTGGGCAGTCAGTGAAAAGTGGACGAAGCCAACGATGATT
AAAATACAAGCAAGCTTTCTAGACCAT
BO14377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-RB | 996 | CG30491-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
| CG30491-RA | 996 | CG30491-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
| CG2065-RB | 903 | CG2065-PB | 1..572 | 110..681 | 580 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-RB | 1088 | CG30491-RB | 23..1015 | 17..1009 | 4965 | 100 | Plus |
| CG30491-RA | 1414 | CG30491-RA | 349..1341 | 17..1009 | 4965 | 100 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 186..757 | 110..681 | 580 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7656154..7656415 | 522..783 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 7656471..7656697 | 783..1009 | 1135 | 100 | Plus |
| 2R | 25286936 | 2R | 7655571..7655737 | 103..269 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 7655944..7656100 | 367..523 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 7655792..7655891 | 267..366 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 7655420..7655506 | 17..103 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 7664040..7664174 | 110..244 | 435 | 88.1 | Plus |
| 2R | 25286936 | 2R | 7666696..7666901 | 533..738 | 280 | 75.7 | Plus |
| 2R | 25286936 | 2R | 7666153..7666243 | 110..200 | 245 | 84.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:53 has no hits.
BO14377.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:55 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 1..996 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:36 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 293..1290 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:28 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1341 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:56 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 293..1290 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:58 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1341 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:58 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7656472..7656697 | 784..1011 | 99 | | Plus |
| 2R | 7655420..7655505 | 17..102 | 100 | -> | Plus |
| 2R | 7655571..7655736 | 103..268 | 100 | -> | Plus |
| 2R | 7655794..7655891 | 269..366 | 100 | -> | Plus |
| 2R | 7655944..7656100 | 367..523 | 100 | -> | Plus |
| 2R | 7656156..7656415 | 524..783 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:28 Download gff for
BO14377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3542925..3543010 | 17..102 | 100 | -> | Plus |
| arm_2R | 3543076..3543241 | 103..268 | 100 | -> | Plus |
| arm_2R | 3543299..3543396 | 269..366 | 100 | -> | Plus |
| arm_2R | 3543449..3543605 | 367..523 | 100 | -> | Plus |
| arm_2R | 3543661..3543920 | 524..783 | 100 | -> | Plus |
| arm_2R | 3543977..3544202 | 784..1011 | 99 | | Plus |
BO14377.pep Sequence
Translation from 16 to 1027
> BO14377.pep
MSLFAFLKSRTAFWLSFTGTTTGLAFFVKDLMQGGQFTKETNETGKVFIV
TGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEIVLETKNKYVYC
RQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQL
GVNHMGHFLLTNLLLDLLKKSSPSRIVNVSSLAHTRGEINTGDLNSDKSY
DEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFF
NNFFAGLFVKPLFWPFVKTPRNGAQTSLYVALDPELEKVTGQYFSDCKLK
EMAPAATDTQTAKWLWAVSEKWTKPTMIKIQASFLDH
BO14377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-PB | 331 | CG30491-PB | 1..331 | 1..331 | 1723 | 100 | Plus |
| CG30491-PA | 331 | CG30491-PA | 1..331 | 1..331 | 1723 | 100 | Plus |
| CG2064-PA | 330 | CG2064-PA | 24..321 | 26..323 | 1108 | 69.1 | Plus |
| CG2065-PB | 300 | CG2065-PB | 1..299 | 32..330 | 1088 | 69.6 | Plus |
| CG2065-PA | 300 | CG2065-PA | 1..299 | 32..330 | 1088 | 69.6 | Plus |
