Clone BO14379 Report

Search the DGRC for BO14379

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG17110-RA
Protein status:BO14379.pep: validated full length
Sequenced Size:1240

Clone Sequence Records

BO14379.3prime Sequence

702 bp (635 high quality bases) assembled on 2006-05-29

> BO14379.3prime
ATGGTCTAGAAAGCTTGCTGAATCAGCAATAGAGGGGATGAGCTTCCTGT
ACACCTGAATTCCGTGCAGATATGTGTCGGCCCGCAAATATTCATCATGA
TTGTGCAGCAGCACCGGGGTGTTGTTGATGGGTGAAAATCCCAGAGCGGG
AATTCCCACTTGCCGGACGTAGAAGCTATCGGTGGCGCCGGGGAAAACTC
GTGTATGGGTGATCAAACCTAGTTCATCTAGTCCCTTTTTGAAGCCCAGC
CAGTAGGGATTGGAGTCGTCTATCTTGGTCACCACCGAGGGGCACTTCAG
CGTGAAATCCAGTTCCACTCCACCACCGACTTCGTTGCACCACTCGCGAA
TCTGATTCTCCATTGCATCGGCATTCTGGTTGATGGCTATGCGAATATCA
AAAGTGGCTTCTAGTACGGGGGGAACCACATTGCTTTGGACGCCACCGTT
GAGTTGGGTCAGGTTCAAAGTGGTCACATCACCGGACTGCAAGGAGGAGT
CCTCGGCCAGTAGCTTGACCTGGGTTTCTCGGAACTTCATCAGCTTATCC
ATCACAAAGTGAAACTTTTCGCCAGCCGTGCTTTTGTGCAGCAGCGATCC
ATGACCTGAAGTGCCACTGAATTTAAATCGAAGTTGCCACAATGTACGCT
CGGCGTAAAATACAGGATAAGTGTCATCTTTCCTGGCGATGCCCTCGTCC
AG

BO14379.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-PA 1209 CG17110-RA 523..1206 702..19 3370 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RB 1677 CG17110-RB 604..1287 702..19 3390 99.7 Minus
CG17110-RC 2911 CG17110-RC 2095..2778 702..19 3390 99.7 Minus
CG17110-RA 1520 CG17110-RA 704..1387 702..19 3390 99.7 Minus
CG17110-RC 2911 CG17110-RC 777..1225 483..38 375 72.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23094380..23094794 635..221 2075 100 Minus
3R 32079331 3R 23094850..23095051 220..19 1010 100 Minus
3R 32079331 3R 23094255..23094321 702..636 305 97 Minus
3R 32079331 3R 23092753..23092899 483..337 225 76.9 Minus
3R 32079331 3R 23093149..23093264 153..38 220 79.3 Minus
Blast to na_te.dros performed on 2015-02-12 18:36:25 has no hits.

BO14379.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:14 Download gff for BO14379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-PA 523..1209 15..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:19 Download gff for BO14379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-PA 523..1209 15..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:55:24 Download gff for BO14379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 704..1390 15..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:50 Download gff for BO14379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 704..1390 15..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:50 Download gff for BO14379.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23094255..23094321 636..702 97 -> Minus
3R 23094380..23094794 221..635 100 -> Minus
3R 23094850..23095054 15..220 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:55:24 Download gff for BO14379.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18919977..18920043 636..702 97 -> Minus
arm_3R 18920102..18920516 221..635 100 -> Minus
arm_3R 18920572..18920776 15..220 99   Minus

BO14379.5prime Sequence

829 bp (764 high quality bases) assembled on 2006-05-29

> BO14379.5prime
GAAGTTATCAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACG
AGGAAATAATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCA
GACGTGGACTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAA
ACTTAATCTCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGG
TGGTGATTATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATA
TTGAACTCACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCA
TGAGCCGTTTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCG
GTGCCCAGGACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGT
GCACTCAAAGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTT
TGTGCCCGACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCA
AGGGTGATTACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGC
ATCGCCAGTGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATT
GTGGCAACTTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGC
TGCACAAAAGCACGGCTGGCGAANAGTTTCACTTTGTGATGGATAAGCTG
ATGAAGTTCCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTT
GCAGTCCGGTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCG
TTCAAAGCAATGTGGTTCCCCCCGTACTA

BO14379.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-PA 1209 CG17110-RA 1..813 17..829 4021 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RB 1677 CG17110-RB 82..894 17..829 4039 99.8 Plus
CG17110-RC 2911 CG17110-RC 1573..2385 17..829 4039 99.8 Plus
CG17110-RA 1520 CG17110-RA 182..994 17..829 4039 99.8 Plus
CG17110-RC 2911 CG17110-RC 362..841 343..822 339 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23093830..23094321 114..605 2460 100 Plus
3R 32079331 3R 23094380..23094603 606..829 1094 99.1 Plus
3R 32079331 3R 23093679..23093775 17..113 485 100 Plus
3R 32079331 3R 23095959..23096141 193..375 240 75.4 Plus
3R 32079331 3R 23092285..23092509 343..567 225 73.3 Plus
3R 32079331 3R 23099861..23099980 256..375 195 77.5 Plus
3R 32079331 3R 10676732..10676856 376..252 190 76.8 Minus
Blast to na_te.dros performed on 2015-02-10 20:38:51 has no hits.

BO14379.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:16 Download gff for BO14379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-PA 1..812 17..828 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:21 Download gff for BO14379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-PA 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:44 Download gff for BO14379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 177..993 12..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:25 Download gff for BO14379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 177..993 12..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:25 Download gff for BO14379.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23093830..23094321 114..605 100 -> Plus
3R 23093674..23093775 12..113 98 -> Plus
3R 23094380..23094602 606..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:44 Download gff for BO14379.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18919396..18919497 12..113 98 -> Plus
arm_3R 18919552..18920043 114..605 100 -> Plus
arm_3R 18920102..18920324 606..828 99   Plus

BO14379.complete Sequence

1240 bp assembled on 2006-10-11

GenBank Submission: FJ633105

> BO14379.complete
GAAGTTATCAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACG
AGGAAATAATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCA
GACGTGGACTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAA
ACTTAATCTCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGG
TGGTGATTATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATA
TTGAACTCACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCA
TGAGCCGTTTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCG
GTGCCCAGGACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGT
GCACTCAAAGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTT
TGTGCCCGACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCA
AGGGTGATTACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGC
ATCGCCAGTGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATT
GTGGCAACTTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGC
TGCACAAAAGCACGGCTGGCGAAAAGTTTCACTTTGTGATGGATAAGCTG
ATGAAGTTCCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTT
GCAGTCCGGTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCG
TCCAAAGCAATGTGGTTCCCCCCGTACTAGAAGCCACTTTTGATATTCGC
ATAGCCATCAACCAGAATGCCGATGCAATGGAGAATCAGATTCGCGAGTG
GTGCAACGAAGTCGGTGGTGGAGTGGAACTGGATTTCACGCTGAAGTGCC
CCTCGGTGGTGACCAAGATAGACGACTCCAATCCCTACTGGCTGGGCTTC
AAAAAGGGACTAGATGAACTAGGTTTGATCACCCATACACGAGTTTTCCC
CGGCGCCACCGATAGCTTCTACGTCCGGCAAGTGGGAATTCCCGCTCTGG
GATTTTCACCCATCAACAACACCCCGGTGCTGCTGCACAATCATGATGAA
TATTTGCGGGCCGACACATATCTGCACGGAATTCAGGTGTACAGGAAGCT
CATCCCCTCTATTGCTGATTCAGCAAGCTTTCTAGACCAT

BO14379.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RB 1209 CG17110-PB 1..1206 17..1222 6030 100 Plus
CG17110-RC 1209 CG17110-PC 1..1206 17..1222 6030 100 Plus
CG17110-RA 1209 CG17110-PA 1..1206 17..1222 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RB 1677 CG17110-RB 82..1287 17..1222 6030 100 Plus
CG17110-RC 2911 CG17110-RC 1573..2778 17..1222 6030 100 Plus
CG17110-RA 1520 CG17110-RA 182..1387 17..1222 6030 100 Plus
CG17110-RC 2911 CG17110-RC 362..1225 343..1203 535 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23093830..23094321 114..605 2460 100 Plus
3R 32079331 3R 23094380..23094794 606..1020 2075 100 Plus
3R 32079331 3R 23094850..23095051 1021..1222 1010 100 Plus
3R 32079331 3R 23093679..23093775 17..113 485 100 Plus
3R 32079331 3R 23095959..23096141 193..375 240 75.4 Plus
3R 32079331 3R 23092285..23092509 343..567 225 73.3 Plus
3R 32079331 3R 23092753..23092899 758..904 225 76.9 Plus
3R 32079331 3R 23093149..23093264 1088..1203 220 79.3 Plus
3R 32079331 3R 23099861..23099980 256..375 195 77.5 Plus
3R 32079331 3R 10676732..10676856 376..252 190 76.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:39:03 has no hits.

BO14379.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:00 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1209 17..1226 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:38 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 177..1390 12..1226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:14 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 182..1387 17..1224 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:01 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 177..1390 12..1226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:31 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 182..1387 17..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:31 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23093679..23093775 17..113 100 -> Plus
3R 23093830..23094321 114..605 100 -> Plus
3R 23094380..23094794 606..1020 100 -> Plus
3R 23094850..23095051 1021..1224 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:14 Download gff for BO14379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18919401..18919497 17..113 100 -> Plus
arm_3R 18919552..18920043 114..605 100 -> Plus
arm_3R 18920102..18920516 606..1020 100 -> Plus
arm_3R 18920572..18920773 1021..1224 99   Plus

BO14379.pep Sequence

Translation from 16 to 1240

> BO14379.pep
MCTCTEQWKNDEEIIIFQEYLRIPSVHPDVDYTACVEFLKRQANKLNLRV
DVVYPVVPSKPVVIMKWLGKHPELKSIILNSHMDVVPVFPEKWTHEPFGA
HIDAQGRIYARGAQDMKSVGCQYMAAVRALKASGYQPKRTVYLTFVPDEE
TGGHMGMAEFVKGDYFKAMNVGFSLDEGIASEDDTYPVFYAERTLWQLRF
KFSGTSGHGSLLHKSTAGEKFHFVMDKLMKFRETQVKLLAEDSSLQSGDV
TTLNLTQLNGGVQSNVVPPVLEATFDIRIAINQNADAMENQIREWCNEVG
GGVELDFTLKCPSVVTKIDDSNPYWLGFKKGLDELGLITHTRVFPGATDS
FYVRQVGIPALGFSPINNTPVLLHNHDEYLRADTYLHGIQVYRKLIPSIA
DSASFLDH

BO14379.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-PB 402 CG17110-PB 1..402 1..402 2134 100 Plus
CG17110-PC 402 CG17110-PC 1..402 1..402 2134 100 Plus
CG17110-PA 402 CG17110-PA 1..402 1..402 2134 100 Plus
CG6726-PC 401 CG6726-PC 3..401 5..402 1526 70.2 Plus
CG6726-PA 401 CG6726-PA 3..401 5..402 1526 70.2 Plus