Clone Sequence Records
BO14379.3prime Sequence
702 bp (635 high quality bases) assembled on 2006-05-29
> BO14379.3prime
ATGGTCTAGAAAGCTTGCTGAATCAGCAATAGAGGGGATGAGCTTCCTGT
ACACCTGAATTCCGTGCAGATATGTGTCGGCCCGCAAATATTCATCATGA
TTGTGCAGCAGCACCGGGGTGTTGTTGATGGGTGAAAATCCCAGAGCGGG
AATTCCCACTTGCCGGACGTAGAAGCTATCGGTGGCGCCGGGGAAAACTC
GTGTATGGGTGATCAAACCTAGTTCATCTAGTCCCTTTTTGAAGCCCAGC
CAGTAGGGATTGGAGTCGTCTATCTTGGTCACCACCGAGGGGCACTTCAG
CGTGAAATCCAGTTCCACTCCACCACCGACTTCGTTGCACCACTCGCGAA
TCTGATTCTCCATTGCATCGGCATTCTGGTTGATGGCTATGCGAATATCA
AAAGTGGCTTCTAGTACGGGGGGAACCACATTGCTTTGGACGCCACCGTT
GAGTTGGGTCAGGTTCAAAGTGGTCACATCACCGGACTGCAAGGAGGAGT
CCTCGGCCAGTAGCTTGACCTGGGTTTCTCGGAACTTCATCAGCTTATCC
ATCACAAAGTGAAACTTTTCGCCAGCCGTGCTTTTGTGCAGCAGCGATCC
ATGACCTGAAGTGCCACTGAATTTAAATCGAAGTTGCCACAATGTACGCT
CGGCGTAAAATACAGGATAAGTGTCATCTTTCCTGGCGATGCCCTCGTCC
AG
BO14379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-PA | 1209 | CG17110-RA | 523..1206 | 702..19 | 3370 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RB | 1677 | CG17110-RB | 604..1287 | 702..19 | 3390 | 99.7 | Minus |
CG17110-RC | 2911 | CG17110-RC | 2095..2778 | 702..19 | 3390 | 99.7 | Minus |
CG17110-RA | 1520 | CG17110-RA | 704..1387 | 702..19 | 3390 | 99.7 | Minus |
CG17110-RC | 2911 | CG17110-RC | 777..1225 | 483..38 | 375 | 72.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23094380..23094794 | 635..221 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 23094850..23095051 | 220..19 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 23094255..23094321 | 702..636 | 305 | 97 | Minus |
3R | 32079331 | 3R | 23092753..23092899 | 483..337 | 225 | 76.9 | Minus |
3R | 32079331 | 3R | 23093149..23093264 | 153..38 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:36:25 has no hits.
BO14379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:14 Download gff for
BO14379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-PA | 523..1209 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:19 Download gff for
BO14379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-PA | 523..1209 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:55:24 Download gff for
BO14379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 704..1390 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:50 Download gff for
BO14379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 704..1390 | 15..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:50 Download gff for
BO14379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23094255..23094321 | 636..702 | 97 | -> | Minus |
3R | 23094380..23094794 | 221..635 | 100 | -> | Minus |
3R | 23094850..23095054 | 15..220 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:55:24 Download gff for
BO14379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18919977..18920043 | 636..702 | 97 | -> | Minus |
arm_3R | 18920102..18920516 | 221..635 | 100 | -> | Minus |
arm_3R | 18920572..18920776 | 15..220 | 99 | | Minus |
BO14379.5prime Sequence
829 bp (764 high quality bases) assembled on 2006-05-29
> BO14379.5prime
GAAGTTATCAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACG
AGGAAATAATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCA
GACGTGGACTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAA
ACTTAATCTCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGG
TGGTGATTATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATA
TTGAACTCACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCA
TGAGCCGTTTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCG
GTGCCCAGGACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGT
GCACTCAAAGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTT
TGTGCCCGACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCA
AGGGTGATTACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGC
ATCGCCAGTGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATT
GTGGCAACTTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGC
TGCACAAAAGCACGGCTGGCGAANAGTTTCACTTTGTGATGGATAAGCTG
ATGAAGTTCCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTT
GCAGTCCGGTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCG
TTCAAAGCAATGTGGTTCCCCCCGTACTA
BO14379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-PA | 1209 | CG17110-RA | 1..813 | 17..829 | 4021 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RB | 1677 | CG17110-RB | 82..894 | 17..829 | 4039 | 99.8 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1573..2385 | 17..829 | 4039 | 99.8 | Plus |
CG17110-RA | 1520 | CG17110-RA | 182..994 | 17..829 | 4039 | 99.8 | Plus |
CG17110-RC | 2911 | CG17110-RC | 362..841 | 343..822 | 339 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23093830..23094321 | 114..605 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 23094380..23094603 | 606..829 | 1094 | 99.1 | Plus |
3R | 32079331 | 3R | 23093679..23093775 | 17..113 | 485 | 100 | Plus |
3R | 32079331 | 3R | 23095959..23096141 | 193..375 | 240 | 75.4 | Plus |
3R | 32079331 | 3R | 23092285..23092509 | 343..567 | 225 | 73.3 | Plus |
3R | 32079331 | 3R | 23099861..23099980 | 256..375 | 195 | 77.5 | Plus |
3R | 32079331 | 3R | 10676732..10676856 | 376..252 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:38:51 has no hits.
BO14379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:16 Download gff for
BO14379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-PA | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:21 Download gff for
BO14379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-PA | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:44 Download gff for
BO14379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 177..993 | 12..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:25 Download gff for
BO14379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 177..993 | 12..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:25 Download gff for
BO14379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23093830..23094321 | 114..605 | 100 | -> | Plus |
3R | 23093674..23093775 | 12..113 | 98 | -> | Plus |
3R | 23094380..23094602 | 606..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:44 Download gff for
BO14379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18919396..18919497 | 12..113 | 98 | -> | Plus |
arm_3R | 18919552..18920043 | 114..605 | 100 | -> | Plus |
arm_3R | 18920102..18920324 | 606..828 | 99 | | Plus |
BO14379.complete Sequence
1240 bp assembled on 2006-10-11
GenBank Submission: FJ633105
> BO14379.complete
GAAGTTATCAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACG
AGGAAATAATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCA
GACGTGGACTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAA
ACTTAATCTCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGG
TGGTGATTATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATA
TTGAACTCACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCA
TGAGCCGTTTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCG
GTGCCCAGGACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGT
GCACTCAAAGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTT
TGTGCCCGACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCA
AGGGTGATTACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGC
ATCGCCAGTGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATT
GTGGCAACTTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGC
TGCACAAAAGCACGGCTGGCGAAAAGTTTCACTTTGTGATGGATAAGCTG
ATGAAGTTCCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTT
GCAGTCCGGTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCG
TCCAAAGCAATGTGGTTCCCCCCGTACTAGAAGCCACTTTTGATATTCGC
ATAGCCATCAACCAGAATGCCGATGCAATGGAGAATCAGATTCGCGAGTG
GTGCAACGAAGTCGGTGGTGGAGTGGAACTGGATTTCACGCTGAAGTGCC
CCTCGGTGGTGACCAAGATAGACGACTCCAATCCCTACTGGCTGGGCTTC
AAAAAGGGACTAGATGAACTAGGTTTGATCACCCATACACGAGTTTTCCC
CGGCGCCACCGATAGCTTCTACGTCCGGCAAGTGGGAATTCCCGCTCTGG
GATTTTCACCCATCAACAACACCCCGGTGCTGCTGCACAATCATGATGAA
TATTTGCGGGCCGACACATATCTGCACGGAATTCAGGTGTACAGGAAGCT
CATCCCCTCTATTGCTGATTCAGCAAGCTTTCTAGACCAT
BO14379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RB | 1209 | CG17110-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
CG17110-RC | 1209 | CG17110-PC | 1..1206 | 17..1222 | 6030 | 100 | Plus |
CG17110-RA | 1209 | CG17110-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RB | 1677 | CG17110-RB | 82..1287 | 17..1222 | 6030 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1573..2778 | 17..1222 | 6030 | 100 | Plus |
CG17110-RA | 1520 | CG17110-RA | 182..1387 | 17..1222 | 6030 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 362..1225 | 343..1203 | 535 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23093830..23094321 | 114..605 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 23094380..23094794 | 606..1020 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 23094850..23095051 | 1021..1222 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 23093679..23093775 | 17..113 | 485 | 100 | Plus |
3R | 32079331 | 3R | 23095959..23096141 | 193..375 | 240 | 75.4 | Plus |
3R | 32079331 | 3R | 23092285..23092509 | 343..567 | 225 | 73.3 | Plus |
3R | 32079331 | 3R | 23092753..23092899 | 758..904 | 225 | 76.9 | Plus |
3R | 32079331 | 3R | 23093149..23093264 | 1088..1203 | 220 | 79.3 | Plus |
3R | 32079331 | 3R | 23099861..23099980 | 256..375 | 195 | 77.5 | Plus |
3R | 32079331 | 3R | 10676732..10676856 | 376..252 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:39:03 has no hits.
BO14379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:00 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 1..1209 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:38 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 177..1390 | 12..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:14 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 182..1387 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:01 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 177..1390 | 12..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:31 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 182..1387 | 17..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:31 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23093679..23093775 | 17..113 | 100 | -> | Plus |
3R | 23093830..23094321 | 114..605 | 100 | -> | Plus |
3R | 23094380..23094794 | 606..1020 | 100 | -> | Plus |
3R | 23094850..23095051 | 1021..1224 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:14 Download gff for
BO14379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18919401..18919497 | 17..113 | 100 | -> | Plus |
arm_3R | 18919552..18920043 | 114..605 | 100 | -> | Plus |
arm_3R | 18920102..18920516 | 606..1020 | 100 | -> | Plus |
arm_3R | 18920572..18920773 | 1021..1224 | 99 | | Plus |
BO14379.pep Sequence
Translation from 16 to 1240
> BO14379.pep
MCTCTEQWKNDEEIIIFQEYLRIPSVHPDVDYTACVEFLKRQANKLNLRV
DVVYPVVPSKPVVIMKWLGKHPELKSIILNSHMDVVPVFPEKWTHEPFGA
HIDAQGRIYARGAQDMKSVGCQYMAAVRALKASGYQPKRTVYLTFVPDEE
TGGHMGMAEFVKGDYFKAMNVGFSLDEGIASEDDTYPVFYAERTLWQLRF
KFSGTSGHGSLLHKSTAGEKFHFVMDKLMKFRETQVKLLAEDSSLQSGDV
TTLNLTQLNGGVQSNVVPPVLEATFDIRIAINQNADAMENQIREWCNEVG
GGVELDFTLKCPSVVTKIDDSNPYWLGFKKGLDELGLITHTRVFPGATDS
FYVRQVGIPALGFSPINNTPVLLHNHDEYLRADTYLHGIQVYRKLIPSIA
DSASFLDH
BO14379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-PB | 402 | CG17110-PB | 1..402 | 1..402 | 2134 | 100 | Plus |
CG17110-PC | 402 | CG17110-PC | 1..402 | 1..402 | 2134 | 100 | Plus |
CG17110-PA | 402 | CG17110-PA | 1..402 | 1..402 | 2134 | 100 | Plus |
CG6726-PC | 401 | CG6726-PC | 3..401 | 5..402 | 1526 | 70.2 | Plus |
CG6726-PA | 401 | CG6726-PA | 3..401 | 5..402 | 1526 | 70.2 | Plus |