Clone BO14381 Report

Search the DGRC for BO14381

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG13243-RA
Protein status:BO14381.pep: validated full length
Sequenced Size:1249

Clone Sequence Records

BO14381.3prime Sequence

696 bp (663 high quality bases) assembled on 2006-05-29

> BO14381.3prime
ATGGTCTAGAAAGCTTGCTCCCTTTGACATATTCTGGAAAAACATAATGG
AGAACTCTAGGACATTGCTGGGCTTGTACCGCAACAGATTGAGCACATAA
TCCTGCATAAAATCGGCCAGCTGTGAATTGCTGCTCAGATAGCTGGTGGC
GTTCTCGTAATTGAGGGCTTTGAGCTCCCGGAACTTGCGAGAAAGCTGTT
CGTTTTGGCGCCACATTAGTTCCAATTTGGGTAGGATAGGTTCCTTTCTC
TTCGGTGGCATGCAGGCGGCATGCAAAAGGTAGTTATAGCCACGCCAATA
ATGCAGAACAATCCGGCCCTCAGGAGTCATGAAGGTCTCGGCCACATCCT
GGAGCTCATCGTTGAAACATTGCTGGGTGAAGATGTGCACGACATTCTTG
TATGTGCGATAGAAAATTCGCACCTCCTTGCGCTCCTTGGAAACAACCAG
ATTGCAGCGAAGGACCCGGCCATACAAATTCATTGTGTAGTACTCGAAGT
TGCCCACAAAATTGTTGCACACTAGGTGTCGCATCAGCAGCATAATCCCG
CCATCCAGGACGAACACATGATCGCGATCCTTGATATCGATGCGAGCCTT
GAAGCGCTGCACTTCCTCATTGATTTTGGTTTCGCGAATGGCGGTTAGCA
TCAAATCGGCATGGTTTCGCAACTCCAGCGTCTTCTCTACCCGAGT

BO14381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-PA 1218 CG13243-RA 538..1215 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-RB 1467 CG13243-RB 643..1320 696..19 3390 100 Minus
CG13243-RA 1421 CG13243-RA 643..1320 696..19 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15853286..15853963 696..19 3390 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:36:12 has no hits.

BO14381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:19 Download gff for BO14381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-PA 538..1218 18..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:26 Download gff for BO14381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-PA 538..1218 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:55:21 Download gff for BO14381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 643..1326 11..696 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:04 Download gff for BO14381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 643..1326 11..696 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:04 Download gff for BO14381.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15853286..15853969 11..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:55:21 Download gff for BO14381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15853286..15853969 11..696 99   Minus

BO14381.5prime Sequence

768 bp (766 high quality bases) assembled on 2006-05-29

> BO14381.5prime
GAAGTTATCAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGG
ATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAAC
AAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGC
CCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGA
TTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCC
AAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTT
CATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAA
TCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTG
GAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAA
GGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATG
ACAAGTTCCTTCTCATCTGCGAGAAGAGATCGGAGTTCGACCGAATCGAC
AATACTCGGGTAGAGAAGACGCTGGAGTTGCGAAACCATGCCGATTTGAT
GCTAACCGCCATTCGCGAAACCAAAATCAATGAGGAAGTGCAGCGCTTCA
AGGCTCGCATCGATATCAAGGATCGCGATCATGTGTTCGTCCTGGATGGC
GGGATTATGCTGCTGATGCGACACCTAGTGTGCAACAATTTTGTGGGCAA
CTTCGAGTACTACACAAT

BO14381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-PA 1218 CG13243-RA 1..752 17..768 3760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-RB 1467 CG13243-RB 106..857 17..768 3760 100 Plus
CG13243-RA 1421 CG13243-RA 106..857 17..768 3760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15852752..15853500 20..768 3745 100 Plus
Blast to na_te.dros performed 2015-02-04 02:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 1579..1617 522..560 114 76.9 Plus

BO14381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:20 Download gff for BO14381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:27 Download gff for BO14381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:35 Download gff for BO14381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 97..857 7..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:46 Download gff for BO14381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 97..857 7..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:46 Download gff for BO14381.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15852750..15853500 16..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:35 Download gff for BO14381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15852750..15853500 16..768 99   Plus

BO14381.complete Sequence

1249 bp assembled on 2006-10-11

GenBank Submission: FJ633106

> BO14381.complete
GAAGTTATCAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGG
ATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAAC
AAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGC
CCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGA
TTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCC
AAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTT
CATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAA
TCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTG
GAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAA
GGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATG
ACAAGTTCCTTCTCATCTGCGAGAAGAGATCGGAGTTCGACCGAATCGAC
AATACTCGGGTAGAGAAGACGCTGGAGTTGCGAAACCATGCCGATTTGAT
GCTAACCGCCATTCGCGAAACCAAAATCAATGAGGAAGTGCAGCGCTTCA
AGGCTCGCATCGATATCAAGGATCGCGATCATGTGTTCGTCCTGGATGGC
GGGATTATGCTGCTGATGCGACACCTAGTGTGCAACAATTTTGTGGGCAA
CTTCGAGTACTACACAATGAATTTGTATGGCCGGGTCCTTCGCTGCAATC
TGGTTGTTTCCAAGGAGCGCAAGGAGGTGCGAATTTTCTATCGCACATAC
AAGAATGTCGTGCACATCTTCACCCAGCAATGTTTCAACGATGAGCTCCA
GGATGTGGCCGAGACCTTCATGACTCCTGAGGGCCGGATTGTTCTGCATT
ATTGGCGTGGCTATAACTACCTTTTGCATGCCGCCTGCATGCCACCGAAG
AGAAAGGAACCTATCCTACCCAAATTGGAACTAATGTGGCGCCAAAACGA
ACAGCTTTCTCGCAAGTTCCGGGAGCTCAAAGCCCTCAATTACGAGAACG
CCACCAGCTATCTGAGCAGCAATTCACAGCTGGCCGATTTTATGCAGGAT
TATGTGCTCAATCTGTTGCGGTACAAGCCCAGCAATGTCCTAGAGTTCTC
CATTATGTTTTTCCAGAATATGTCAAAGGGAGCAAGCTTTCTAGACCAT

BO14381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-RB 1218 CG13243-PB 1..1215 17..1231 6075 100 Plus
CG13243-RA 1218 CG13243-PA 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-RB 1467 CG13243-RB 106..1320 17..1231 6075 100 Plus
CG13243-RA 1421 CG13243-RA 106..1320 17..1231 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15852752..15853963 20..1231 6060 100 Plus
Blast to na_te.dros performed 2014-11-27 23:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 1579..1617 522..560 114 76.9 Plus

BO14381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:05 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1218 17..1232 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:40 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 16..1245 7..1239 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:49 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 106..1320 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:05 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 16..1245 7..1239 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:05 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 106..1320 17..1233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:05 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15852751..15853963 17..1233 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:49 Download gff for BO14381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15852751..15853963 17..1233 99   Plus

BO14381.pep Sequence

Translation from 16 to 1249

> BO14381.pep
MDAQGDQDMRLDPPLFVTCDMEQFRDPNKKRAANDACEELDKLDAQDEIS
VSSIISALLRPIEPSDDQYKVCDWGINPKQFMPTKQAIIFKEQLFISKLR
NTNCKLNENLKIFFERELEQIGRFCLNVEESFDGYVIFSSSKMKKGKGMT
ECGHQLKGKYDDKFLLICEKRSEFDRIDNTRVEKTLELRNHADLMLTAIR
ETKINEEVQRFKARIDIKDRDHVFVLDGGIMLLMRHLVCNNFVGNFEYYT
MNLYGRVLRCNLVVSKERKEVRIFYRTYKNVVHIFTQQCFNDELQDVAET
FMTPEGRIVLHYWRGYNYLLHAACMPPKRKEPILPKLELMWRQNEQLSRK
FRELKALNYENATSYLSSNSQLADFMQDYVLNLLRYKPSNVLEFSIMFFQ
NMSKGASFLDH

BO14381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-PB 405 CG13243-PB 1..405 1..405 2135 100 Plus
CG13243-PA 405 CG13243-PA 1..405 1..405 2135 100 Plus