Clone Sequence Records
BO14381.3prime Sequence
696 bp (663 high quality bases) assembled on 2006-05-29
> BO14381.3prime
ATGGTCTAGAAAGCTTGCTCCCTTTGACATATTCTGGAAAAACATAATGG
AGAACTCTAGGACATTGCTGGGCTTGTACCGCAACAGATTGAGCACATAA
TCCTGCATAAAATCGGCCAGCTGTGAATTGCTGCTCAGATAGCTGGTGGC
GTTCTCGTAATTGAGGGCTTTGAGCTCCCGGAACTTGCGAGAAAGCTGTT
CGTTTTGGCGCCACATTAGTTCCAATTTGGGTAGGATAGGTTCCTTTCTC
TTCGGTGGCATGCAGGCGGCATGCAAAAGGTAGTTATAGCCACGCCAATA
ATGCAGAACAATCCGGCCCTCAGGAGTCATGAAGGTCTCGGCCACATCCT
GGAGCTCATCGTTGAAACATTGCTGGGTGAAGATGTGCACGACATTCTTG
TATGTGCGATAGAAAATTCGCACCTCCTTGCGCTCCTTGGAAACAACCAG
ATTGCAGCGAAGGACCCGGCCATACAAATTCATTGTGTAGTACTCGAAGT
TGCCCACAAAATTGTTGCACACTAGGTGTCGCATCAGCAGCATAATCCCG
CCATCCAGGACGAACACATGATCGCGATCCTTGATATCGATGCGAGCCTT
GAAGCGCTGCACTTCCTCATTGATTTTGGTTTCGCGAATGGCGGTTAGCA
TCAAATCGGCATGGTTTCGCAACTCCAGCGTCTTCTCTACCCGAGT
BO14381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-PA | 1218 | CG13243-RA | 538..1215 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-RB | 1467 | CG13243-RB | 643..1320 | 696..19 | 3390 | 100 | Minus |
CG13243-RA | 1421 | CG13243-RA | 643..1320 | 696..19 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15853286..15853963 | 696..19 | 3390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:36:12 has no hits.
BO14381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:19 Download gff for
BO14381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-PA | 538..1218 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:26 Download gff for
BO14381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-PA | 538..1218 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:55:21 Download gff for
BO14381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 643..1326 | 11..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:04 Download gff for
BO14381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 643..1326 | 11..696 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:04 Download gff for
BO14381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15853286..15853969 | 11..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:55:21 Download gff for
BO14381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15853286..15853969 | 11..696 | 99 | | Minus |
BO14381.5prime Sequence
768 bp (766 high quality bases) assembled on 2006-05-29
> BO14381.5prime
GAAGTTATCAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGG
ATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAAC
AAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGC
CCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGA
TTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCC
AAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTT
CATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAA
TCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTG
GAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAA
GGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATG
ACAAGTTCCTTCTCATCTGCGAGAAGAGATCGGAGTTCGACCGAATCGAC
AATACTCGGGTAGAGAAGACGCTGGAGTTGCGAAACCATGCCGATTTGAT
GCTAACCGCCATTCGCGAAACCAAAATCAATGAGGAAGTGCAGCGCTTCA
AGGCTCGCATCGATATCAAGGATCGCGATCATGTGTTCGTCCTGGATGGC
GGGATTATGCTGCTGATGCGACACCTAGTGTGCAACAATTTTGTGGGCAA
CTTCGAGTACTACACAAT
BO14381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-PA | 1218 | CG13243-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-RB | 1467 | CG13243-RB | 106..857 | 17..768 | 3760 | 100 | Plus |
CG13243-RA | 1421 | CG13243-RA | 106..857 | 17..768 | 3760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15852752..15853500 | 20..768 | 3745 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 02:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 1579..1617 | 522..560 | 114 | 76.9 | Plus |
BO14381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:20 Download gff for
BO14381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:27 Download gff for
BO14381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:35 Download gff for
BO14381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 97..857 | 7..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:46 Download gff for
BO14381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 97..857 | 7..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:46 Download gff for
BO14381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15852750..15853500 | 16..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:35 Download gff for
BO14381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15852750..15853500 | 16..768 | 99 | | Plus |
BO14381.complete Sequence
1249 bp assembled on 2006-10-11
GenBank Submission: FJ633106
> BO14381.complete
GAAGTTATCAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGG
ATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAAC
AAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGC
CCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGA
TTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCC
AAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTT
CATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAA
TCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTG
GAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAA
GGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATG
ACAAGTTCCTTCTCATCTGCGAGAAGAGATCGGAGTTCGACCGAATCGAC
AATACTCGGGTAGAGAAGACGCTGGAGTTGCGAAACCATGCCGATTTGAT
GCTAACCGCCATTCGCGAAACCAAAATCAATGAGGAAGTGCAGCGCTTCA
AGGCTCGCATCGATATCAAGGATCGCGATCATGTGTTCGTCCTGGATGGC
GGGATTATGCTGCTGATGCGACACCTAGTGTGCAACAATTTTGTGGGCAA
CTTCGAGTACTACACAATGAATTTGTATGGCCGGGTCCTTCGCTGCAATC
TGGTTGTTTCCAAGGAGCGCAAGGAGGTGCGAATTTTCTATCGCACATAC
AAGAATGTCGTGCACATCTTCACCCAGCAATGTTTCAACGATGAGCTCCA
GGATGTGGCCGAGACCTTCATGACTCCTGAGGGCCGGATTGTTCTGCATT
ATTGGCGTGGCTATAACTACCTTTTGCATGCCGCCTGCATGCCACCGAAG
AGAAAGGAACCTATCCTACCCAAATTGGAACTAATGTGGCGCCAAAACGA
ACAGCTTTCTCGCAAGTTCCGGGAGCTCAAAGCCCTCAATTACGAGAACG
CCACCAGCTATCTGAGCAGCAATTCACAGCTGGCCGATTTTATGCAGGAT
TATGTGCTCAATCTGTTGCGGTACAAGCCCAGCAATGTCCTAGAGTTCTC
CATTATGTTTTTCCAGAATATGTCAAAGGGAGCAAGCTTTCTAGACCAT
BO14381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-RB | 1218 | CG13243-PB | 1..1215 | 17..1231 | 6075 | 100 | Plus |
CG13243-RA | 1218 | CG13243-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-RB | 1467 | CG13243-RB | 106..1320 | 17..1231 | 6075 | 100 | Plus |
CG13243-RA | 1421 | CG13243-RA | 106..1320 | 17..1231 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15852752..15853963 | 20..1231 | 6060 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 1579..1617 | 522..560 | 114 | 76.9 | Plus |
BO14381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:05 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 1..1218 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:40 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 16..1245 | 7..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:49 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 106..1320 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:05 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 16..1245 | 7..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:05 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13243-RA | 106..1320 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:05 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15852751..15853963 | 17..1233 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:49 Download gff for
BO14381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15852751..15853963 | 17..1233 | 99 | | Plus |
BO14381.pep Sequence
Translation from 16 to 1249
> BO14381.pep
MDAQGDQDMRLDPPLFVTCDMEQFRDPNKKRAANDACEELDKLDAQDEIS
VSSIISALLRPIEPSDDQYKVCDWGINPKQFMPTKQAIIFKEQLFISKLR
NTNCKLNENLKIFFERELEQIGRFCLNVEESFDGYVIFSSSKMKKGKGMT
ECGHQLKGKYDDKFLLICEKRSEFDRIDNTRVEKTLELRNHADLMLTAIR
ETKINEEVQRFKARIDIKDRDHVFVLDGGIMLLMRHLVCNNFVGNFEYYT
MNLYGRVLRCNLVVSKERKEVRIFYRTYKNVVHIFTQQCFNDELQDVAET
FMTPEGRIVLHYWRGYNYLLHAACMPPKRKEPILPKLELMWRQNEQLSRK
FRELKALNYENATSYLSSNSQLADFMQDYVLNLLRYKPSNVLEFSIMFFQ
NMSKGASFLDH
BO14381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13243-PB | 405 | CG13243-PB | 1..405 | 1..405 | 2135 | 100 | Plus |
CG13243-PA | 405 | CG13243-PA | 1..405 | 1..405 | 2135 | 100 | Plus |