Clone Sequence Records
BO14388.3prime Sequence
708 bp (660 high quality bases) assembled on 2006-05-29
> BO14388.3prime
ATGGTCTAGAAAGCTTGCACAAAAAACTTTAATAGCATTGGGAACAACAG
ATACCTTAATGGGTCTTGCATCATACTCCTCGCCATCGATGGAGTAAAAC
TTCTCGCCCATTTCACCATCCGGATGCAGTTGAATAGTCCTGCTCTTAAC
CACCAAGCTGGGTAAAATTTTGCTGCACGTGACTTCCGGAATTTGTTTGA
TAAACTCCCAGCCCGGCTGCAGGGAGCTTATAAACTGACTTTCCAGCTCC
GCAAAGTTATCCTTGTTTTGAACACAATTGATGTTTATCTGGCTGGCTTC
AGCGCTTCCCTCGAACTTCTTGCTGCAATTGTCGTTCTTGACTAGCGGCC
TCTTGGTTTCACCCGGATTATTCTTGTACTTAATGAGGCCTCTGGTGAAG
AGGCCAGAAGGCTGGGCGGTCTCCTGGCGCTGTACAGTAGCAGCACAGTC
AACGCAGCCAGGACACGGCGGTGTGTACACATAGTCGGTCTTAAGGCTCC
AGTTATCGGCAAAGGACTTGGACGCAGCGGAAGCGTAGTGTCGCAGTGGT
CCAAAGTACCAGTACTTATCCTTTGCCGCATCGATGTCCTCCAGCAGACC
CCAGGACAGACCATTAAAACCGAATATGGGCTTCAATTGGCTATTGCTGC
CATCTTCTTCATTGATCACATCAAAACGGATCACACTCTGGTACTGGCTC
TCATCCTT
BO14388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31873-PA | 1227 | CG31873-RA | 535..1224 | 708..19 | 3275 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1300 | CG31873-RA | 599..1288 | 708..19 | 3345 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10270764..10271453 | 708..19 | 3345 | 99 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:14:38 has no hits.
BO14388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:28 Download gff for
BO14388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-PA | 535..1227 | 16..708 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:40 Download gff for
BO14388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-PA | 535..1227 | 16..708 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:37 Download gff for
BO14388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 599..1288 | 19..708 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:29 Download gff for
BO14388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 599..1288 | 19..708 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:29 Download gff for
BO14388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10270764..10271453 | 19..708 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:37 Download gff for
BO14388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10270764..10271453 | 19..708 | 98 | | Minus |
BO14388.5prime Sequence
765 bp (735 high quality bases) assembled on 2006-05-29
> BO14388.5prime
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
AGAAGATGGCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTC
TGTCCTGGGGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGG
TACTTTGGACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGC
CGATAACTGGAGCCT
BO14388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31873-PA | 1227 | CG31873-RA | 1..749 | 17..765 | 3695 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1300 | CG31873-RA | 65..813 | 17..765 | 3715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10270449..10270978 | 236..765 | 2650 | 100 | Plus |
2L | 23513712 | 2L | 10270274..10270394 | 115..235 | 605 | 100 | Plus |
2L | 23513712 | 2L | 10270115..10270213 | 17..115 | 465 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:21:45 has no hits.
BO14388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:29 Download gff for
BO14388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-PA | 1..749 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:41 Download gff for
BO14388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-PA | 1..749 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:33 Download gff for
BO14388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..813 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:45 Download gff for
BO14388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..813 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:45 Download gff for
BO14388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
2L | 10270449..10270978 | 236..765 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:33 Download gff for
BO14388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
arm_2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
arm_2L | 10270449..10270978 | 236..765 | 100 | | Plus |
BO14388.complete Sequence
1258 bp assembled on 2006-10-11
GenBank Submission: FJ633107
> BO14388.complete
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
AGAAGATGGCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTC
TGTCCTGGGGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGG
TACTTTGGACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGC
CGATAACTGGAGCCTTAAGACCGACTATGTGTACACACCGCCGTGTCCTG
GCTGCGTTGACTGTGCTGCTACTGTACAGCGCCAGGAGACCGCCCAGCCT
TCTGGCCTCTTCACCAGAGGCCTCATTAAGTACAAGAATAATCCGGGTGA
AACCAAGAGGCCGCTAGTCAAGAACGACAATTGCAGCAAGAAGTTCGAGG
GAAGCGCTGAAGCCAGCCAGATAAACATCAATTGTGTTCAAAACAAGGAT
AACTTTGCGGAGCTGGAAAGTCAGTTTATAAGCTCCCTGCAGCCGGGCTG
GGAGTTTATCAAACAAATTCCGGAAGTCACGTGCAGCAAAATTTTACCCA
GCTTGGTGGTTAAGAGCAGGACTATTCAACTGCATCCGGATGGTGAAATG
GGCGAGAAGTTTTACTCCATCGATGGCGAGGAGTATGATGCAAGACCCAT
TAAGGTATCTGTTGTTCCCAATGCTATTAAAGTTTTTTGTGCAAGCTTTC
TAGACCAT
BO14388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1227 | CG31873-PA | 1..1224 | 17..1240 | 6015 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1300 | CG31873-RA | 65..1288 | 17..1240 | 6015 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10270449..10271453 | 236..1240 | 4950 | 99.5 | Plus |
2L | 23513712 | 2L | 10270274..10270394 | 115..235 | 605 | 100 | Plus |
2L | 23513712 | 2L | 10270115..10270213 | 17..115 | 465 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:45:28 has no hits.
BO14388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:15 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-RA | 1..1227 | 17..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:43 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-RA | 25..1248 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:35 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..1288 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:15 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-RA | 25..1248 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:48 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..1288 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:48 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
2L | 10270449..10271453 | 236..1242 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:35 Download gff for
BO14388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
arm_2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
arm_2L | 10270449..10271453 | 236..1242 | 99 | | Plus |
BO14388.pep Sequence
Translation from 16 to 1258
> BO14388.pep
MNYLRVIRNNWKKCTFGAAVSVYALQALKTHIEIEQHMREFASNIQANWI
SDRPKKVLVVMNPVANKKRSEKFFKNYCEPVLHLAGYSVEILRTNHIGHA
KTYVEELATLPDAIVVAGGDGTSSEVVTGLMRRRGNLCPITILPLGRSVQ
SASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSN
SQLKPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFADNWSL
KTDYVYTPPCPGCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRPL
VKNDNCSKKFEGSAEASQININCVQNKDNFAELESQFISSLQPGWEFIKQ
IPEVTCSKILPSLVVKSRTIQLHPDGEMGEKFYSIDGEEYDARPIKVSVV
PNAIKVFCASFLDH
BO14388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-PA | 408 | CG31873-PA | 1..408 | 1..408 | 2141 | 100 | Plus |