Clone BO14388 Report

Search the DGRC for BO14388

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:143
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG31873-RA
Protein status:BO14388.pep: validated full length
Sequenced Size:1258

Clone Sequence Records

BO14388.3prime Sequence

708 bp (660 high quality bases) assembled on 2006-05-29

> BO14388.3prime
ATGGTCTAGAAAGCTTGCACAAAAAACTTTAATAGCATTGGGAACAACAG
ATACCTTAATGGGTCTTGCATCATACTCCTCGCCATCGATGGAGTAAAAC
TTCTCGCCCATTTCACCATCCGGATGCAGTTGAATAGTCCTGCTCTTAAC
CACCAAGCTGGGTAAAATTTTGCTGCACGTGACTTCCGGAATTTGTTTGA
TAAACTCCCAGCCCGGCTGCAGGGAGCTTATAAACTGACTTTCCAGCTCC
GCAAAGTTATCCTTGTTTTGAACACAATTGATGTTTATCTGGCTGGCTTC
AGCGCTTCCCTCGAACTTCTTGCTGCAATTGTCGTTCTTGACTAGCGGCC
TCTTGGTTTCACCCGGATTATTCTTGTACTTAATGAGGCCTCTGGTGAAG
AGGCCAGAAGGCTGGGCGGTCTCCTGGCGCTGTACAGTAGCAGCACAGTC
AACGCAGCCAGGACACGGCGGTGTGTACACATAGTCGGTCTTAAGGCTCC
AGTTATCGGCAAAGGACTTGGACGCAGCGGAAGCGTAGTGTCGCAGTGGT
CCAAAGTACCAGTACTTATCCTTTGCCGCATCGATGTCCTCCAGCAGACC
CCAGGACAGACCATTAAAACCGAATATGGGCTTCAATTGGCTATTGCTGC
CATCTTCTTCATTGATCACATCAAAACGGATCACACTCTGGTACTGGCTC
TCATCCTT

BO14388.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31873-PA 1227 CG31873-RA 535..1224 708..19 3275 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1300 CG31873-RA 599..1288 708..19 3345 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10270764..10271453 708..19 3345 99 Minus
Blast to na_te.dros performed on 2015-01-31 11:14:38 has no hits.

BO14388.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:28 Download gff for BO14388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31873-PA 535..1227 16..708 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:40 Download gff for BO14388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31873-PA 535..1227 16..708 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:47:37 Download gff for BO14388.3prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 599..1288 19..708 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:54:29 Download gff for BO14388.3prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 599..1288 19..708 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:54:29 Download gff for BO14388.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10270764..10271453 19..708 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:47:37 Download gff for BO14388.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10270764..10271453 19..708 98   Minus

BO14388.5prime Sequence

765 bp (735 high quality bases) assembled on 2006-05-29

> BO14388.5prime
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
AGAAGATGGCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTC
TGTCCTGGGGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGG
TACTTTGGACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGC
CGATAACTGGAGCCT

BO14388.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31873-PA 1227 CG31873-RA 1..749 17..765 3695 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1300 CG31873-RA 65..813 17..765 3715 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10270449..10270978 236..765 2650 100 Plus
2L 23513712 2L 10270274..10270394 115..235 605 100 Plus
2L 23513712 2L 10270115..10270213 17..115 465 98 Plus
Blast to na_te.dros performed on 2015-02-11 13:21:45 has no hits.

BO14388.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:29 Download gff for BO14388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31873-PA 1..749 17..765 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:21:41 Download gff for BO14388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31873-PA 1..749 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:33 Download gff for BO14388.5prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..813 17..765 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:45 Download gff for BO14388.5prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..813 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:45 Download gff for BO14388.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10270115..10270212 17..114 97 -> Plus
2L 10270274..10270394 115..235 100 -> Plus
2L 10270449..10270978 236..765 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:33 Download gff for BO14388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10270115..10270212 17..114 97 -> Plus
arm_2L 10270274..10270394 115..235 100 -> Plus
arm_2L 10270449..10270978 236..765 100   Plus

BO14388.complete Sequence

1258 bp assembled on 2006-10-11

GenBank Submission: FJ633107

> BO14388.complete
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
AGAAGATGGCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTC
TGTCCTGGGGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGG
TACTTTGGACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGC
CGATAACTGGAGCCTTAAGACCGACTATGTGTACACACCGCCGTGTCCTG
GCTGCGTTGACTGTGCTGCTACTGTACAGCGCCAGGAGACCGCCCAGCCT
TCTGGCCTCTTCACCAGAGGCCTCATTAAGTACAAGAATAATCCGGGTGA
AACCAAGAGGCCGCTAGTCAAGAACGACAATTGCAGCAAGAAGTTCGAGG
GAAGCGCTGAAGCCAGCCAGATAAACATCAATTGTGTTCAAAACAAGGAT
AACTTTGCGGAGCTGGAAAGTCAGTTTATAAGCTCCCTGCAGCCGGGCTG
GGAGTTTATCAAACAAATTCCGGAAGTCACGTGCAGCAAAATTTTACCCA
GCTTGGTGGTTAAGAGCAGGACTATTCAACTGCATCCGGATGGTGAAATG
GGCGAGAAGTTTTACTCCATCGATGGCGAGGAGTATGATGCAAGACCCAT
TAAGGTATCTGTTGTTCCCAATGCTATTAAAGTTTTTTGTGCAAGCTTTC
TAGACCAT

BO14388.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1227 CG31873-PA 1..1224 17..1240 6015 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1300 CG31873-RA 65..1288 17..1240 6015 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10270449..10271453 236..1240 4950 99.5 Plus
2L 23513712 2L 10270274..10270394 115..235 605 100 Plus
2L 23513712 2L 10270115..10270213 17..115 465 98 Plus
Blast to na_te.dros performed on 2014-11-27 15:45:28 has no hits.

BO14388.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:15 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31873-RA 1..1227 17..1243 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:43 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31873-RA 25..1248 17..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:35 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..1288 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:15 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31873-RA 25..1248 17..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:48 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..1288 17..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:48 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10270115..10270212 17..114 97 -> Plus
2L 10270274..10270394 115..235 100 -> Plus
2L 10270449..10271453 236..1242 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:35 Download gff for BO14388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10270115..10270212 17..114 97 -> Plus
arm_2L 10270274..10270394 115..235 100 -> Plus
arm_2L 10270449..10271453 236..1242 99   Plus

BO14388.pep Sequence

Translation from 16 to 1258

> BO14388.pep
MNYLRVIRNNWKKCTFGAAVSVYALQALKTHIEIEQHMREFASNIQANWI
SDRPKKVLVVMNPVANKKRSEKFFKNYCEPVLHLAGYSVEILRTNHIGHA
KTYVEELATLPDAIVVAGGDGTSSEVVTGLMRRRGNLCPITILPLGRSVQ
SASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSN
SQLKPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFADNWSL
KTDYVYTPPCPGCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRPL
VKNDNCSKKFEGSAEASQININCVQNKDNFAELESQFISSLQPGWEFIKQ
IPEVTCSKILPSLVVKSRTIQLHPDGEMGEKFYSIDGEEYDARPIKVSVV
PNAIKVFCASFLDH

BO14388.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-PA 408 CG31873-PA 1..408 1..408 2141 100 Plus