Clone Sequence Records
BO14401.3prime Sequence
815 bp (759 high quality bases) assembled on 2006-05-29
> BO14401.3prime
ATGGTCTAGAAAGCTTGCTTTGGCAGACTTGCCTTCCTCGTCTTTCTTCT
TGTCCTTTGCATCCTTCTTGGGTTCCTTTTTGGTATCCTTGGGAGCATCT
TTCTTCGCATCCTTCGGAGCCTCTTTTTTAGCCTTTTGACCCTTTTTGGT
TTTTGTGAGATCTACCACCTCCTCCTTAACCTTCTCGCCCACTTTAACGG
CCAGCAAAAAGGCAGACAGAGCAATGGTTAGAGCCACAGCCACATAGCCG
GTGGCATAGATCTCTGGTATCGTGAGAAACTTGTTCAAATACCAGATCAA
ATGTCGAGTTCCGGCGACTGTATGGTAGGCAAATGGCATGGTCACCATCA
CCTTGGCCATCGTCACCATGCCGTGGCAGTCACATTTTTCGACTTTCTTT
ATAAATCCCTCCATATCGCCTTGCAAGCAAAGGCCGCTGATTCCCACGAA
CCAAACAAAAACGGCCAGAACAAACCCACTAATTCGTAGAAATGCGGACA
AGGTGGAAGTCAATTGAATTTTGTAGATGGACAAATGTGGCGATAACTGT
CTTCCAAGCAGCATATTTCGATCGTCATAAGGCAAATCGGGAGGCATACG
AAAGGGTATCACTTTCAAAGTGACAGGCGGAACGAGGATATCGCCACTAG
GTCCAATTGTCGTGGGTCCACTAGCCTTATGATCCTTTGGGGCTTTAGTA
GCCAGAAGACGAGCCGAGTTGAATGGTTTTTGGGCGAGCAAGTGCCTTAA
TTGCGGACTGCAAATATTCAATCCTCGAGCCAATGAGCGACAAGTGCTCA
TGTCGACTGATAACT
BO14401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-PA | 786 | CG6629-RA | 6..783 | 796..19 | 3890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 983 | CG6629-RA | 110..892 | 801..19 | 3900 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11114762..11115534 | 19..791 | 3865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:53:00 has no hits.
BO14401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:46 Download gff for
BO14401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-PA | 1..786 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:05 Download gff for
BO14401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-PA | 1..786 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:44:33 Download gff for
BO14401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 19..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:46 Download gff for
BO14401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 19..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:46 Download gff for
BO14401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11114762..11115534 | 19..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:44:33 Download gff for
BO14401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6940484..6941256 | 19..791 | 100 | | Plus |
BO14401.5prime Sequence
815 bp (764 high quality bases) assembled on 2006-05-29
> BO14401.5prime
GAAGTTATCAGTCGACATGAACACTTGTCGCTCATTGGCTCGAGGATTGA
ATATTTGCAGTCCGCAATTAAGGCACTTGCTCGCCCAAAAACCATTCAAC
TCGGCTCGTCTTCTGGCTACTAAAGCCCCAAAGGATCATAAGGCTAGTGG
ACCCACGACAATTGGACCTAGTGGCGATATCCTCGTTCCGCCTGTCACTT
TGAAAGTGATACCCTTTCGTATGCCTCCCGATTTGCCTTATGACGATCGA
AATATGCTGCTTGGAAGACAGTTATCGCCACATTTGTCCATCTACAAAAT
TCAATTGACTTCCACCTTGTCCGCATTTCTACGAATTAGTGGGTTTGTTC
TGGCCGTTTTTGTTTGGTTCGTGGGAATCAGCGGCCTTTGCTTGCAAGGC
GATATGGAGGGATTTATAAAGAAAGTCGAAAAATGTGACTGCCACGGCAT
GGTGACGATGGCCAAGGTGATGGTGACCATGCCATTTGCCTACCATACAG
TCGCCGGAACTCGACATTTGATCTGGTATTTGAACAAGTTTCTCACGATA
CCAGAGATCTATGCCACCGGCTATGTGGCTGTGGCTCTAACCATTGCTCT
GTCTGCCTTTTTGCTGGCCGTTAAAGTGGGCGAGAAGGTTAAGGAGGAGG
TGGTAGATCTCACAAAAACCAAAAAGGGTCAAAAGGCTAAAAAAGAGGCT
CCGAAGGATGCGAAGAAAGATGCTCCCAAGGATACCAAAAAGGAACCCAA
GAAGGATGCAAAGGACAAGAAGAAAGACGAGGAAAGCAAGTCTGCCAAAG
CAAGCTTTCTAGACC
BO14401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-PA | 786 | CG6629-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 983 | CG6629-RA | 110..892 | 17..799 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11114762..11115534 | 799..27 | 3850 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:40:19 has no hits.
BO14401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:47 Download gff for
BO14401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:06 Download gff for
BO14401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:27 Download gff for
BO14401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:45 Download gff for
BO14401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 17..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:45 Download gff for
BO14401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11114762..11115534 | 27..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:27 Download gff for
BO14401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6940484..6941256 | 27..799 | 99 | | Minus |
BO14401.complete Sequence
817 bp assembled on 2006-10-11
GenBank Submission: FJ633110
> BO14401.complete
GAAGTTATCAGTCGACATGAACACTTGTCGCTCATTGGCTCGAGGATTGA
ATATTTGCAGTCCGCAATTAAGGCACTTGCTCGCCCAAAAACCATTCAAC
TCGGCTCGTCTTCTGGCTACTAAAGCCCCAAAGGATCATAAGGCTAGTGG
ACCCACGACAATTGGACCTAGTGGCGATATCCTCGTTCCGCCTGTCACTT
TGAAAGTGATACCCTTTCGTATGCCTCCCGATTTGCCTTATGACGATCGA
AATATGCTGCTTGGAAGACAGTTATCGCCACATTTGTCCATCTACAAAAT
TCAATTGACTTCCACCTTGTCCGCATTTCTACGAATTAGTGGGTTTGTTC
TGGCCGTTTTTGTTTGGTTCGTGGGAATCAGCGGCCTTTGCTTGCAAGGC
GATATGGAGGGATTTATAAAGAAAGTCGAAAAATGTGACTGCCACGGCAT
GGTGACGATGGCCAAGGTGATGGTGACCATGCCATTTGCCTACCATACAG
TCGCCGGAACTCGACATTTGATCTGGTATTTGAACAAGTTTCTCACGATA
CCAGAGATCTATGCCACCGGCTATGTGGCTGTGGCTCTAACCATTGCTCT
GTCTGCCTTTTTGCTGGCCGTTAAAGTGGGCGAGAAGGTTAAGGAGGAGG
TGGTAGATCTCACAAAAACCAAAAAGGGTCAAAAGGCTAAAAAAGAGGCT
CCGAAGGATGCGAAGAAAGATGCTCCCAAGGATACCAAAAAGGAACCCAA
GAAGGATGCAAAGGACAAGAAGAAAGACGAGGAAGGCAAGTCTGCCAAAG
CAAGCTTTCTAGACCAT
BO14401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 786 | CG6629-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 983 | CG6629-RA | 110..892 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11114762..11115534 | 799..27 | 3865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:26 has no hits.
BO14401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:18 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:22 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:04 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:18 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:42 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..892 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:42 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11114759..11115534 | 27..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:04 Download gff for
BO14401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6940481..6941256 | 27..801 | 99 | | Minus |
BO14401.pep Sequence
Translation from 16 to 817
> BO14401.pep
MNTCRSLARGLNICSPQLRHLLAQKPFNSARLLATKAPKDHKASGPTTIG
PSGDILVPPVTLKVIPFRMPPDLPYDDRNMLLGRQLSPHLSIYKIQLTST
LSAFLRISGFVLAVFVWFVGISGLCLQGDMEGFIKKVEKCDCHGMVTMAK
VMVTMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALTIALSAFLL
AVKVGEKVKEEVVDLTKTKKGQKAKKEAPKDAKKDAPKDTKKEPKKDAKD
KKKDEEGKSAKASFLDH
BO14401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-PA | 261 | CG6629-PA | 1..261 | 1..261 | 1350 | 100 | Plus |
| SdhC-PB | 171 | CG6666-PB | 26..168 | 59..199 | 265 | 41.3 | Plus |
| SdhC-PA | 171 | CG6666-PA | 26..168 | 59..199 | 265 | 41.3 | Plus |
