Clone BO14403 Report

Search the DGRC for BO14403

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptPsf3-RA
Protein status:BO14403.pep: validated full length
Sequenced Size:670

Clone Sequence Records

BO14403.5prime Sequence

668 bp (667 high quality bases) assembled on 2006-05-29

> BO14403.5prime
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGGCAAGCTTTCTAGACC

BO14403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2222-PA 639 CG2222-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 2380 CG2222-RC 809..1444 17..652 3180 100 Plus
Psf3-RB 1668 CG2222-RB 97..732 17..652 3180 100 Plus
Psf3-RA 1150 CG2222-RA 97..732 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10384488..10384883 514..119 1980 100 Minus
X 23542271 X 10384289..10384430 652..511 710 100 Minus
X 23542271 X 10384950..10385053 120..17 520 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:45:16 has no hits.

BO14403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:51 Download gff for BO14403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2222-PA 1..639 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:11 Download gff for BO14403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2222-PA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:21 Download gff for BO14403.5prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..735 17..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:45 Download gff for BO14403.5prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..735 17..656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:45 Download gff for BO14403.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10384286..10384426 515..656 98 <- Minus
X 10384488..10384882 120..514 100 <- Minus
X 10384951..10385053 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:21 Download gff for BO14403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10278319..10278459 515..656 98 <- Minus
arm_X 10278521..10278915 120..514 100 <- Minus
arm_X 10278984..10279086 17..119 100   Minus

BO14403.3prime Sequence

668 bp (667 high quality bases) assembled on 2006-05-29

> BO14403.3prime
ATGGTCTAGAAAGCTTGCCAAGGTGGCCCGCTTGCTGTTGGGCAGAGCAT
CGCCCTCGTCATCGCTGCGATCCGCACGTCGCCGCTTCTTTTGGTGCTCC
TCGACCAGCTCCGAGGTGCGAATCTTGTTGCCCGTCATCTGCAGCCATTC
GATGTACTGACTGTTGGTGCGCACTCCAGCCTCGTGCAGCTTGGCCTCGA
TGTTATCCAGTCGATGCTCCGCCTTGGCTGCCTGTCCGTCGCTCTTCGAG
ATGTCCAGGAGATGACGTACCCTCTGGCGCAGCGTTTCGAAGATGATGCG
GCCGATGACATGGTTGCGATCGTAGGGCGTCAGATAGCGACCGAACTCGT
AGAAGTACGGGTGCAGGCGTCCCAGCTCGATGTGCGTGGTCTCCGCCTCG
CAGACGGCCTTATGCACATTGCGATAGATATCTGGCACGGCGACGGTGAA
GTAGGCATTGTTTACCTTCAGCTCCTTGATGTACCACAACGGCAGATTGA
CCGTCCTGCCGGGCTCCAGGTCATCCGATTCCGCGCCGGAGTCCAGGAAT
CCCATCCGCTGCAGCTTGGTGTTCACCCGACATTCCACCTTCTCCTGGGT
CACGAATATGTCCTCGATGGAGTAATAGTTCGGAAAATAGTTCATTCCGT
TCATGTCGACTGATAACT

BO14403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2222-PA 639 CG2222-RA 1..636 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 2380 CG2222-RC 809..1444 654..19 3180 100 Minus
Psf3-RB 1668 CG2222-RB 97..732 654..19 3180 100 Minus
Psf3-RA 1150 CG2222-RA 97..732 654..19 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10384488..10384883 157..552 1980 100 Plus
X 23542271 X 10384289..10384430 19..160 710 100 Plus
X 23542271 X 10384950..10385053 551..654 520 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:57:46 has no hits.

BO14403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:50 Download gff for BO14403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2222-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:10 Download gff for BO14403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2222-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:37 Download gff for BO14403.3prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..735 15..654 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:24:32 Download gff for BO14403.3prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..735 15..654 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:24:32 Download gff for BO14403.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10384286..10384426 15..156 98 <- Plus
X 10384488..10384882 157..551 100 <- Plus
X 10384951..10385053 552..654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:37 Download gff for BO14403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10278319..10278459 15..156 98 <- Plus
arm_X 10278521..10278915 157..551 100 <- Plus
arm_X 10278984..10279086 552..654 100   Plus

BO14403.complete Sequence

670 bp assembled on 2006-10-11

GenBank Submission: FJ633111

> BO14403.complete
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGGCAAGCTTTCTAGACCAT

BO14403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 639 CG2222-PC 1..636 17..652 3180 100 Plus
Psf3-RB 639 CG2222-PB 1..636 17..652 3180 100 Plus
Psf3-RA 639 CG2222-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 2380 CG2222-RC 809..1444 17..652 3180 100 Plus
Psf3-RB 1668 CG2222-RB 97..732 17..652 3180 100 Plus
Psf3-RA 1150 CG2222-RA 97..732 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10384488..10384883 514..119 1980 100 Minus
X 23542271 X 10384289..10384430 652..511 710 100 Minus
X 23542271 X 10384950..10385053 120..17 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:50:39 has no hits.

BO14403.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:21 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:24 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 82..720 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:42 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..732 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:21 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 82..720 17..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:25 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..732 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:25 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
X 10384951..10385053 17..119 100   Minus
X 10384287..10384426 515..654 98 <- Minus
X 10384488..10384882 120..514 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:42 Download gff for BO14403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10278320..10278459 515..654 98 <- Minus
arm_X 10278521..10278915 120..514 100 <- Minus
arm_X 10278984..10279086 17..119 100   Minus

BO14403.pep Sequence

Translation from 16 to 670

> BO14403.pep
MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR
TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY
FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD
NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE
GDALPNSKRATLASFLDH

BO14403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-PC 212 CG2222-PC 1..212 1..212 1119 100 Plus
Psf3-PB 212 CG2222-PB 1..212 1..212 1119 100 Plus
Psf3-PA 212 CG2222-PA 1..212 1..212 1119 100 Plus