Clone Sequence Records
BO14403.5prime Sequence
668 bp (667 high quality bases) assembled on 2006-05-29
> BO14403.5prime
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGGCAAGCTTTCTAGACC
BO14403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2222-PA | 639 | CG2222-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 2380 | CG2222-RC | 809..1444 | 17..652 | 3180 | 100 | Plus |
Psf3-RB | 1668 | CG2222-RB | 97..732 | 17..652 | 3180 | 100 | Plus |
Psf3-RA | 1150 | CG2222-RA | 97..732 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10384488..10384883 | 514..119 | 1980 | 100 | Minus |
X | 23542271 | X | 10384289..10384430 | 652..511 | 710 | 100 | Minus |
X | 23542271 | X | 10384950..10385053 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:45:16 has no hits.
BO14403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:51 Download gff for
BO14403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2222-PA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:11 Download gff for
BO14403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2222-PA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:21 Download gff for
BO14403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..735 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:45 Download gff for
BO14403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..735 | 17..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:45 Download gff for
BO14403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10384286..10384426 | 515..656 | 98 | <- | Minus |
X | 10384488..10384882 | 120..514 | 100 | <- | Minus |
X | 10384951..10385053 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:21 Download gff for
BO14403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10278319..10278459 | 515..656 | 98 | <- | Minus |
arm_X | 10278521..10278915 | 120..514 | 100 | <- | Minus |
arm_X | 10278984..10279086 | 17..119 | 100 | | Minus |
BO14403.3prime Sequence
668 bp (667 high quality bases) assembled on 2006-05-29
> BO14403.3prime
ATGGTCTAGAAAGCTTGCCAAGGTGGCCCGCTTGCTGTTGGGCAGAGCAT
CGCCCTCGTCATCGCTGCGATCCGCACGTCGCCGCTTCTTTTGGTGCTCC
TCGACCAGCTCCGAGGTGCGAATCTTGTTGCCCGTCATCTGCAGCCATTC
GATGTACTGACTGTTGGTGCGCACTCCAGCCTCGTGCAGCTTGGCCTCGA
TGTTATCCAGTCGATGCTCCGCCTTGGCTGCCTGTCCGTCGCTCTTCGAG
ATGTCCAGGAGATGACGTACCCTCTGGCGCAGCGTTTCGAAGATGATGCG
GCCGATGACATGGTTGCGATCGTAGGGCGTCAGATAGCGACCGAACTCGT
AGAAGTACGGGTGCAGGCGTCCCAGCTCGATGTGCGTGGTCTCCGCCTCG
CAGACGGCCTTATGCACATTGCGATAGATATCTGGCACGGCGACGGTGAA
GTAGGCATTGTTTACCTTCAGCTCCTTGATGTACCACAACGGCAGATTGA
CCGTCCTGCCGGGCTCCAGGTCATCCGATTCCGCGCCGGAGTCCAGGAAT
CCCATCCGCTGCAGCTTGGTGTTCACCCGACATTCCACCTTCTCCTGGGT
CACGAATATGTCCTCGATGGAGTAATAGTTCGGAAAATAGTTCATTCCGT
TCATGTCGACTGATAACT
BO14403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2222-PA | 639 | CG2222-RA | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 2380 | CG2222-RC | 809..1444 | 654..19 | 3180 | 100 | Minus |
Psf3-RB | 1668 | CG2222-RB | 97..732 | 654..19 | 3180 | 100 | Minus |
Psf3-RA | 1150 | CG2222-RA | 97..732 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10384488..10384883 | 157..552 | 1980 | 100 | Plus |
X | 23542271 | X | 10384289..10384430 | 19..160 | 710 | 100 | Plus |
X | 23542271 | X | 10384950..10385053 | 551..654 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:57:46 has no hits.
BO14403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:26:50 Download gff for
BO14403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2222-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:10 Download gff for
BO14403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2222-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:37 Download gff for
BO14403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..735 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:24:32 Download gff for
BO14403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..735 | 15..654 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:24:32 Download gff for
BO14403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10384286..10384426 | 15..156 | 98 | <- | Plus |
X | 10384488..10384882 | 157..551 | 100 | <- | Plus |
X | 10384951..10385053 | 552..654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:37 Download gff for
BO14403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10278319..10278459 | 15..156 | 98 | <- | Plus |
arm_X | 10278521..10278915 | 157..551 | 100 | <- | Plus |
arm_X | 10278984..10279086 | 552..654 | 100 | | Plus |
BO14403.complete Sequence
670 bp assembled on 2006-10-11
GenBank Submission: FJ633111
> BO14403.complete
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGGCAAGCTTTCTAGACCAT
BO14403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 639 | CG2222-PC | 1..636 | 17..652 | 3180 | 100 | Plus |
Psf3-RB | 639 | CG2222-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
Psf3-RA | 639 | CG2222-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 2380 | CG2222-RC | 809..1444 | 17..652 | 3180 | 100 | Plus |
Psf3-RB | 1668 | CG2222-RB | 97..732 | 17..652 | 3180 | 100 | Plus |
Psf3-RA | 1150 | CG2222-RA | 97..732 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10384488..10384883 | 514..119 | 1980 | 100 | Minus |
X | 23542271 | X | 10384289..10384430 | 652..511 | 710 | 100 | Minus |
X | 23542271 | X | 10384950..10385053 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:50:39 has no hits.
BO14403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:21 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:24 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 82..720 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:42 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..732 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:21 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 82..720 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:25 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..732 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:25 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10384951..10385053 | 17..119 | 100 | | Minus |
X | 10384287..10384426 | 515..654 | 98 | <- | Minus |
X | 10384488..10384882 | 120..514 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:42 Download gff for
BO14403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10278320..10278459 | 515..654 | 98 | <- | Minus |
arm_X | 10278521..10278915 | 120..514 | 100 | <- | Minus |
arm_X | 10278984..10279086 | 17..119 | 100 | | Minus |
BO14403.pep Sequence
Translation from 16 to 670
> BO14403.pep
MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR
TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY
FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD
NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE
GDALPNSKRATLASFLDH
BO14403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-PC | 212 | CG2222-PC | 1..212 | 1..212 | 1119 | 100 | Plus |
Psf3-PB | 212 | CG2222-PB | 1..212 | 1..212 | 1119 | 100 | Plus |
Psf3-PA | 212 | CG2222-PA | 1..212 | 1..212 | 1119 | 100 | Plus |