Clone Sequence Records
BO14409.3prime Sequence
785 bp (784 high quality bases) assembled on 2006-05-29
> BO14409.3prime
ATGGTCTAGAAAGCTTGCGCTGAACCATCCCTTTTTGTTCATTGAATTCC
ACTTGGCTATGTTCACCAAAATGGATGCCACACACTGGTCCTTGTCCCGA
TTTTGGCCGTAGTAATCGACAAACTCGCCATCGGGATTGACCAGGTACAT
GATGATGGTGTGATCCACAATATAATCGTTGTCCTCGTCCCGCGGTCCAG
CGCTGAAATAAACCCTGAAGGCCTTGCACACTTTGCGGATTTGTTCGACG
GTTCCCGTGAGTCCCAGCAGTTTGGGGGAGAACTCTTTTACGTATTTGGC
CACCACCTCTTTGGAGTCACGTTCTGGGTCAACGGTGATAAAGATGGGCT
GCACTGCTGGCGTTTGCGGGGACTTTTCAACTTCATCGACGACGGCGGCC
ATCTTCTCTAGCTCATCGGGACAAATATCCGGGCAGTGGGTGAAGCCAAA
ATAGATGAGCAGCCACTTGCCTAAGAAGTCCTCCGATTTGCGAACAGCTC
CCTGCGAATCAACTAATTCCCAACTGCCGCCGATGGCTGCTTTTCCCAAT
TGCCGCTGACGCTCCTTCATTCTCGCCTCATCCTTCTCGCTCTTCACGTA
CAGCATGAAGCCCACTCCTCCGGCTCCAAGGGCTCCAATGACGGCCAGAC
TTCTCCAAGAGATCGGACCCTTGCCTTTAGTGGAATCTGCGGGAGCGGCA
TAATGACGAATTGCGGGCTGTTGTGCCCAGCGACGACAGCTGCCCACTAA
GCGTTGCAGGGAGCGGGACATGTCGACTGATAACT
BO14409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8885-PA | 756 | CG8885-RA | 1..753 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..863 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 378..771 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 4968010..4968369 | 19..378 | 1800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:19:03 has no hits.
BO14409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:01 Download gff for
BO14409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-PA | 1..756 | 18..771 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:26 Download gff for
BO14409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-PA | 1..756 | 18..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:16:36 Download gff for
BO14409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 106..874 | 7..777 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:23 Download gff for
BO14409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 106..874 | 7..777 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:23 Download gff for
BO14409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4968432..4968830 | 378..777 | 99 | | Plus |
| 2L | 4967999..4968368 | 7..377 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:16:36 Download gff for
BO14409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4967999..4968368 | 7..377 | 98 | <- | Plus |
| arm_2L | 4968432..4968830 | 378..777 | 99 | | Plus |
BO14409.5prime Sequence
785 bp (784 high quality bases) assembled on 2006-05-29
> BO14409.5prime
GAAGTTATCAGTCGACATGTCCCGCTCCCTGCAACGCTTAGTGGGCAGCT
GTCGTCGCTGGGCACAACAGCCCGCAATTCGTCATTATGCCGCTCCCGCA
GATTCCACTAAAGGCAAGGGTCCGATCTCTTGGAGAAGTCTGGCCGTCAT
TGGAGCCCTTGGAGCCGGAGGAGTGGGCTTCATGCTGTACGTGAAGAGCG
AGAAGGATGAGGCGAGAATGAAGGAGCGTCAGCGGCAATTGGGAAAAGCA
GCCATCGGCGGCAGTTGGGAATTAGTTGATTCGCAGGGAGCTGTTCGCAA
ATCGGAGGACTTCTTAGGCAAGTGGCTGCTCATCTATTTTGGCTTCACCC
ACTGCCCGGATATTTGTCCCGATGAGCTAGAGAAGATGGCCGCCGTCGTC
GATGAAGTTGAAAAGTCCCCGCAAACGCCAGCAGTGCAGCCCATCTTTAT
CACCGTTGACCCAGAACGTGACTCCAAAGAGGTGGTGGCCAAATACGTAA
AAGAGTTCTCCCCCAAACTGCTGGGACTCACGGGAACCGTCGAACAAATC
CGCAAAGTGTGCAAGGCCTTCAGGGTTTATTTCAGCGCTGGACCGCGGGA
CGAGGACAACGATTATATTGTGGATCACACCATCATCATGTACCTGGTCA
ATCCCGATGGCGAGTTTGTCGATTACTACGGCCAAAATCGGGACAAGGAC
CAGTGTGTGGCATCCATTTTGGTGAACATAGCCAAGTGGAATTCAATGAA
CAAAAAGGGATGGTTCAGCGCAAGCTTTCTAGACC
BO14409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8885-PA | 756 | CG8885-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..863 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 410..17 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 4968010..4968369 | 769..410 | 1800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:38:51 has no hits.
BO14409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:02 Download gff for
BO14409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-PA | 1..756 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:28 Download gff for
BO14409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-PA | 1..756 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:49:29 Download gff for
BO14409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 106..874 | 11..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:22:36 Download gff for
BO14409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 106..874 | 11..781 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:22:36 Download gff for
BO14409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4967999..4968368 | 411..781 | 98 | <- | Minus |
| 2L | 4968432..4968830 | 11..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:49:29 Download gff for
BO14409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4967999..4968368 | 411..781 | 98 | <- | Minus |
| arm_2L | 4968432..4968830 | 11..410 | 99 | | Minus |
BO14409.complete Sequence
787 bp assembled on 2006-10-11
GenBank Submission: FJ633113
> BO14409.complete
GAAGTTATCAGTCGACATGTCCCGCTCCCTGCAACGCTTAGTGGGCAGCT
GTCGTCGCTGGGCACAACAGCCCGCAATTCGTCATTATGCCGCTCCCGCA
GATTCCACTAAAGGCAAGGGTCCGATCTCTTGGAGAAGTCTGGCCGTCAT
TGGAGCCCTTGGAGCCGGAGGAGTGGGCTTCATGCTGTACGTGAAGAGCG
AGAAGGATGAGGCGAGAATGAAGGAGCGTCAGCGGCAATTGGGAAAAGCA
GCCATCGGCGGCAGTTGGGAATTAGTTGATTCGCAGGGAGCTGTTCGCAA
ATCGGAGGACTTCTTAGGCAAGTGGCTGCTCATCTATTTTGGCTTCACCC
ACTGCCCGGATATTTGTCCCGATGAGCTAGAGAAGATGGCCGCCGTCGTC
GATGAAGTTGAAAAGTCCCCGCAAACGCCAGCAGTGCAGCCCATCTTTAT
CACCGTTGACCCAGAACGTGACTCCAAAGAGGTGGTGGCCAAATACGTAA
AAGAGTTCTCCCCCAAACTGCTGGGACTCACGGGAACCGTCGAACAAATC
CGCAAAGTGTGCAAGGCCTTCAGGGTTTATTTCAGCGCTGGACCGCGGGA
CGAGGACAACGATTATATTGTGGATCACACCATCATCATGTACCTGGTCA
ATCCCGATGGCGAGTTTGTCGATTACTACGGCCAAAATCGGGACAAGGAC
CAGTGTGTGGCATCCATTTTGGTGAACATAGCCAAGTGGAATTCAATGAA
CAAAAAGGGATGGTTCAGCGCAAGCTTTCTAGACCAT
BO14409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 756 | CG8885-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-RA | 1041 | CG8885-RA | 111..863 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4968432..4968825 | 410..17 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 4968010..4968369 | 769..410 | 1800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:53:49 has no hits.
BO14409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:34 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 1..756 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:27 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 107..875 | 11..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:32 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 111..863 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:34 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8885-RA | 107..875 | 11..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:56 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scox-RA | 111..863 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:56 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4968008..4968368 | 411..771 | 99 | <- | Minus |
| 2L | 4968432..4968825 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:32 Download gff for
BO14409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4968008..4968368 | 411..771 | 99 | <- | Minus |
| arm_2L | 4968432..4968825 | 17..410 | 100 | | Minus |
BO14409.pep Sequence
Translation from 16 to 787
> BO14409.pep
MSRSLQRLVGSCRRWAQQPAIRHYAAPADSTKGKGPISWRSLAVIGALGA
GGVGFMLYVKSEKDEARMKERQRQLGKAAIGGSWELVDSQGAVRKSEDFL
GKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPAVQPIFITVDPE
RDSKEVVAKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPRDEDNDY
IVDHTIIMYLVNPDGEFVDYYGQNRDKDQCVASILVNIAKWNSMNKKGWF
SASFLDH
BO14409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scox-PA | 251 | CG8885-PA | 1..251 | 1..251 | 1326 | 100 | Plus |
