Clone BO14413 Report

Search the DGRC for BO14413

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptTret1-2-RA
Protein status:BO14413.pep: validated full length
Sequenced Size:1498

Clone Sequence Records

BO14413.3prime Sequence

904 bp (800 high quality bases) assembled on 2006-05-29

> BO14413.3prime
ATGGTCTAGAAAGCTTGCCATGTTGAAAGGAAATGGCTTGATGTTGACCA
CCGAGGACATGGGCACACGGCCCATCATCTTTCGCTCAATTTCCTCCAAC
GATTTGCCCCGCGTTTCGGGCACAAAAATAATCACAAAGAACAGACCCAC
GATGCAGATGGCGCCGAATAGCCAGAAGGCTCCATGCGCGCCCATAGCAA
CCGTGAGGTCCTGGAAGGTCTTGGTTACCACAAACGTGCAGAACCAGTTG
AAAGCCGTGACCACCGAGGCAGCCGGTCCTCGAATCTTGGCCGGCAGAAT
CTCACCCATCATCAGCCAGGGAATGGGTCCGAAGCCCAGGGAGAATCCCA
GAATGTAGATAACGAAGCAAGTGAGTGGCAACCAACCCAAATGGGACACA
TCCGGACCATGCGCCTTGCAGTAGAAGAAGCCGCCCAGAATGGACAGGGT
CACGATCATGGCGATGTCGGATACATACAGAAGAATCTTTCTGCCCAACC
GATCAATCAGAATGATGCCCATAAACGTAGCAAAAAAGTTAACTACACCC
ACGATGATCGTGGAAAGATTGCTATCAATTGTGGATCCCGCATCCTTGAA
GATCTGGACCGTGTAGAAGATAACCGCGTTGATACCGCTGAACTGTTGAA
AGAACATCAGACCCAAGGAAATGGAAAGTGGCTTCAGATTGTTTCGCTTA
AACAGCTCCAAACAGGTGTTCTGAGTGGCCTGACGATCGGCATCGGCCTG
AGATTGCATCAACTCCTTTAGTTCGGGCTCCACATCCGCCTCCTTGCCAC
GCACCCATTTCAAAGCCTTCCTGGCGCGCTCTTCCTGACCACGGTTCACA
AACCAGCGCGGAGTTTCGGGGATAATGATCATCAAAATCAGGAAGGGAAC
GGGC

BO14413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8234-PB 1302 CG8234-RB 414..1299 904..19 4305 99.4 Minus
CG8234-PA 1467 CG8234-RA 579..1464 904..19 4305 99.4 Minus
CG30035-PA 2574 CG30035-RA 2135..2456 452..131 1285 95.9 Minus
CG30035-PB 1470 CG30035-RB 1031..1352 452..131 1285 95.9 Minus
CG30035-PA 2574 CG30035-RA 1876..2039 711..548 545 93.2 Minus
CG30035-PB 1470 CG30035-RB 772..935 711..548 545 93.2 Minus
CG30035-PA 2574 CG30035-RA 1683..1859 904..728 485 90.9 Minus
CG30035-PB 1470 CG30035-RB 579..755 904..728 485 90.9 Minus
CG30035-PA 2574 CG30035-RA 2044..2130 543..457 260 91.9 Minus
CG30035-PB 1470 CG30035-RB 940..1026 543..457 260 91.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-2-RA 1695 CG8234-RA 691..1576 904..19 4355 99.4 Minus
Tret1-1-RB 1980 CG30035-RB 738..1626 904..19 3225 91.2 Minus
Tret1-1-RA 3132 CG30035-RA 1890..2778 904..19 3225 91.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11676894..11677311 904..487 2060 99.5 Minus
2R 25286936 2R 11673413..11673830 904..487 1445 89.7 Minus
2R 25286936 2R 11677366..11677657 488..197 1415 99 Minus
2R 25286936 2R 11673888..11674179 488..197 1205 94.2 Minus
2R 25286936 2R 11677713..11677895 201..19 900 99.5 Minus
2R 25286936 2R 11674243..11674428 201..19 565 88.2 Minus
Blast to na_te.dros performed on 2015-02-10 16:22:19 has no hits.

BO14413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:09 Download gff for BO14413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8234-PB 414..1302 15..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:38 Download gff for BO14413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8234-PA 579..1467 15..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:41:34 Download gff for BO14413.3prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-2-RA 691..1579 15..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:09 Download gff for BO14413.3prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-2-RA 691..1579 15..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:09 Download gff for BO14413.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11676894..11677311 487..904 99 -> Minus
2R 11677368..11677653 201..486 99 -> Minus
2R 11677714..11677898 15..200 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:41:34 Download gff for BO14413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7564399..7564816 487..904 99 -> Minus
arm_2R 7564873..7565158 201..486 99 -> Minus
arm_2R 7565219..7565403 15..200 98   Minus

BO14413.5prime Sequence

914 bp (774 high quality bases) assembled on 2006-05-29

> BO14413.5prime
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCA
CCTCCTTTGAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATG
CCACTGGCTGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTAT
CATCACTGCTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGA
CGATTCCTAACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTATCTGGGTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGC
TGCCCACCGCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTG
TGAACCGTGGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCGGATGTGGAGCCCGAACTAAAGGAGTTGATGCAATCTCA
GGCCGATGCCGATCGTCAGGCCACTCAGAACACCTGTTTGGAGCTGTTTA
AGCGAAACAATCTGAAGCCACTTTCCATTTCCTTTGGTCTGATGTTCTTT
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGAT

BO14413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8234-PA 1467 CG8234-RA 1..898 17..914 4365 99.4 Plus
CG8234-PB 1302 CG8234-RB 1..733 182..914 3565 99.4 Plus
CG30035-PB 1470 CG30035-RB 526..755 542..771 775 93.4 Plus
CG30035-PA 2574 CG30035-RA 1630..1859 542..771 775 93.4 Plus
CG30035-PB 1470 CG30035-RB 1..176 17..192 605 93.7 Plus
CG30035-PB 1470 CG30035-RB 181..366 197..382 580 92.4 Plus
CG30035-PA 2574 CG30035-RA 1285..1470 197..382 580 92.4 Plus
CG30035-PB 1470 CG30035-RB 772..898 788..914 460 94.4 Plus
CG30035-PA 2574 CG30035-RA 1876..2002 788..914 460 94.4 Plus
CG30035-PB 1470 CG30035-RB 374..516 390..532 440 92.3 Plus
CG30035-PA 2574 CG30035-RA 1478..1620 390..532 440 92.3 Plus
CG30035-PA 2574 CG30035-RA 1186..1280 98..192 375 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-2-RA 1695 CG8234-RA 113..1010 17..914 4415 99.4 Plus
Tret1-1-RB 1980 CG30035-RB 160..1057 17..914 3335 91.5 Plus
Tret1-1-RA 3132 CG30035-RA 1393..2209 98..914 3035 91.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11676526..11677213 227..914 3395 99.6 Plus
2R 25286936 2R 11673045..11673732 227..914 2540 91.3 Plus
2R 25286936 2R 11676201..11676338 90..227 630 97.1 Plus
2R 25286936 2R 11672706..11672843 90..227 510 91.3 Plus
2R 25286936 2R 11676047..11676132 17..102 430 100 Plus
2R 25286936 2R 11672215..11672300 17..102 325 91.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:56:59 has no hits.

BO14413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:10 Download gff for BO14413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8234-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:40 Download gff for BO14413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8234-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:58 Download gff for BO14413.5prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-2-RA 113..1010 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:02 Download gff for BO14413.5prime
Subject Subject Range Query Range Percent Splice Strand
Tret1-2-RA 113..1010 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:02 Download gff for BO14413.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11676047..11676130 17..100 100 -> Plus
2R 11676212..11676337 101..226 98 -> Plus
2R 11676526..11677213 227..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:58 Download gff for BO14413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7563552..7563635 17..100 100 -> Plus
arm_2R 7563717..7563842 101..226 98 -> Plus
arm_2R 7564031..7564718 227..914 99   Plus

BO14413.complete Sequence

1498 bp assembled on 2006-10-11

GenBank Submission: FJ633114

> BO14413.complete
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCA
CCTCCTTTGAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATG
CCACTGGCTGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTAT
CATCACTGCTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGA
CGATTCCTAACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTATCTGGGTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGC
TGCCCACCGCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTG
TGAACCGTGGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCGGATGTGGAGCCCGAACTAAAGGAGTTGATGCAATCTCA
GGCCGATGCCGATCGTCAGGCCACTCAGAACACCTGTTTGGAGCTGTTTA
AGCGAAACAATCTGAAGCCACTTTCCATTTCCTTGGGTCTGATGTTCTTT
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGATCCACAATTGATAGCAATCTTTCCACGATCATCGTGG
GTGTAGTTAACTTTTTTGCTACGTTTATGGGCATCATTCTGATTGATCGG
TTGGGCAGAAAGATTCTTCTGTATGTATCCGACATCGCCATGATCGTGAC
CCTGTCCATTCTGGGCGGCTTCTTCTACTGCAAGGCGCATGGTCCGGATG
TGTCCCATTTGGGTTGGTTGCCACTCACTTGCTTCGTTATCTACATTCTG
GGATTCTCCCTGGGCTTCGGACCCATTCCCTGGCTGATGATGGGTGAGAT
TCTGCCGGCCAAGATTCGAGGACCGGCTGCCTCGGTGGTCACGGCTTTCA
ACTGGTTCTGCACGTTTGTGGTAACCAAGACCTTCCAGGACCTCACGGTT
GCTATGGGCGCGCATGGAGCCTTCTGGCTATTCGGCGCCATCTGCATCGT
GGGTCTGTTCTTTGTGATTATTTTTGTGCCCGAAACGCGGGGCAAATCGT
TGGAGGAAATTGAGCGAAAGATGATGGGCCGTGTGCCCATGTCCTCGGTG
GTCAACATCAAGCCATTTCCTTTCAACATGGCAAGCTTTCTAGACCAT

BO14413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-2-RA 1467 CG8234-PA 1..1464 17..1480 7215 99.5 Plus
Tret1-1-RB 1470 CG30035-PB 1..1467 17..1480 5395 91.3 Plus
Tret1-1-RA 2574 CG30035-PA 1186..2571 98..1480 5095 91.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-2-RA 1695 CG8234-RA 113..1576 17..1480 7215 99.5 Plus
Tret1-1-RB 1980 CG30035-RB 160..1626 17..1480 5395 91.3 Plus
Tret1-1-RA 3132 CG30035-RA 1393..2778 98..1480 5095 91.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11676526..11677311 227..1012 3900 99.7 Plus
2R 25286936 2R 11673045..11673830 227..1012 2850 90.8 Plus
2R 25286936 2R 11677366..11677657 1011..1302 1415 99 Plus
2R 25286936 2R 11673888..11674179 1011..1302 1205 94.2 Plus
2R 25286936 2R 11677713..11677895 1298..1480 900 99.5 Plus
2R 25286936 2R 11676201..11676338 90..227 630 97.1 Plus
2R 25286936 2R 11674243..11674428 1298..1480 565 88.2 Plus
2R 25286936 2R 11672706..11672843 90..227 510 91.3 Plus
2R 25286936 2R 11676047..11676132 17..102 430 100 Plus
2R 25286936 2R 11672215..11672300 17..102 325 91.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:18:58 has no hits.

BO14413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:37 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8234-RA 1..1467 17..1484 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:29 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8234-RA 88..1554 17..1484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:07 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
Tret1-2-RA 113..1576 17..1482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:38 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8234-RA 88..1554 17..1484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:38 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
Tret1-2-RA 113..1576 17..1482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:38 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11676212..11676337 101..226 98 -> Plus
2R 11676047..11676130 17..100 100 -> Plus
2R 11676526..11677311 227..1012 99 -> Plus
2R 11677368..11677653 1013..1298 99 -> Plus
2R 11677714..11677895 1299..1482 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:07 Download gff for BO14413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7563552..7563635 17..100 100 -> Plus
arm_2R 7563717..7563842 101..226 98 -> Plus
arm_2R 7564031..7564816 227..1012 99 -> Plus
arm_2R 7564873..7565158 1013..1298 99 -> Plus
arm_2R 7565219..7565400 1299..1482 98   Plus

BO14413.pep Sequence

Translation from 16 to 1498

> BO14413.pep
MKILMRADTHVSFSVPADGLKANFTFSQVLAALSVSLCSLVVGFVSAYTS
PALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRS
TILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGET
LQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLIL
MIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADR
QATQNTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS
TIDSNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILG
GFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKI
RGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFV
IIFVPETRGKSLEEIERKMMGRVPMSSVVNIKPFPFNMASFLDH

BO14413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tret1-2-PA 488 CG8234-PA 1..488 1..488 2496 100 Plus
Tret1-1-PB 489 CG30035-PB 1..489 1..488 2222 88.8 Plus
Tret1-1-PA 857 CG30035-PA 392..857 24..488 2130 88.6 Plus
CG10960-PA 471 CG10960-PA 15..459 28..471 864 41.2 Plus
CG10960-PC 471 CG10960-PC 15..459 28..471 864 41.2 Plus