Clone Sequence Records
BO14413.3prime Sequence
904 bp (800 high quality bases) assembled on 2006-05-29
> BO14413.3prime
ATGGTCTAGAAAGCTTGCCATGTTGAAAGGAAATGGCTTGATGTTGACCA
CCGAGGACATGGGCACACGGCCCATCATCTTTCGCTCAATTTCCTCCAAC
GATTTGCCCCGCGTTTCGGGCACAAAAATAATCACAAAGAACAGACCCAC
GATGCAGATGGCGCCGAATAGCCAGAAGGCTCCATGCGCGCCCATAGCAA
CCGTGAGGTCCTGGAAGGTCTTGGTTACCACAAACGTGCAGAACCAGTTG
AAAGCCGTGACCACCGAGGCAGCCGGTCCTCGAATCTTGGCCGGCAGAAT
CTCACCCATCATCAGCCAGGGAATGGGTCCGAAGCCCAGGGAGAATCCCA
GAATGTAGATAACGAAGCAAGTGAGTGGCAACCAACCCAAATGGGACACA
TCCGGACCATGCGCCTTGCAGTAGAAGAAGCCGCCCAGAATGGACAGGGT
CACGATCATGGCGATGTCGGATACATACAGAAGAATCTTTCTGCCCAACC
GATCAATCAGAATGATGCCCATAAACGTAGCAAAAAAGTTAACTACACCC
ACGATGATCGTGGAAAGATTGCTATCAATTGTGGATCCCGCATCCTTGAA
GATCTGGACCGTGTAGAAGATAACCGCGTTGATACCGCTGAACTGTTGAA
AGAACATCAGACCCAAGGAAATGGAAAGTGGCTTCAGATTGTTTCGCTTA
AACAGCTCCAAACAGGTGTTCTGAGTGGCCTGACGATCGGCATCGGCCTG
AGATTGCATCAACTCCTTTAGTTCGGGCTCCACATCCGCCTCCTTGCCAC
GCACCCATTTCAAAGCCTTCCTGGCGCGCTCTTCCTGACCACGGTTCACA
AACCAGCGCGGAGTTTCGGGGATAATGATCATCAAAATCAGGAAGGGAAC
GGGC
BO14413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8234-PB | 1302 | CG8234-RB | 414..1299 | 904..19 | 4305 | 99.4 | Minus |
CG8234-PA | 1467 | CG8234-RA | 579..1464 | 904..19 | 4305 | 99.4 | Minus |
CG30035-PA | 2574 | CG30035-RA | 2135..2456 | 452..131 | 1285 | 95.9 | Minus |
CG30035-PB | 1470 | CG30035-RB | 1031..1352 | 452..131 | 1285 | 95.9 | Minus |
CG30035-PA | 2574 | CG30035-RA | 1876..2039 | 711..548 | 545 | 93.2 | Minus |
CG30035-PB | 1470 | CG30035-RB | 772..935 | 711..548 | 545 | 93.2 | Minus |
CG30035-PA | 2574 | CG30035-RA | 1683..1859 | 904..728 | 485 | 90.9 | Minus |
CG30035-PB | 1470 | CG30035-RB | 579..755 | 904..728 | 485 | 90.9 | Minus |
CG30035-PA | 2574 | CG30035-RA | 2044..2130 | 543..457 | 260 | 91.9 | Minus |
CG30035-PB | 1470 | CG30035-RB | 940..1026 | 543..457 | 260 | 91.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-2-RA | 1695 | CG8234-RA | 691..1576 | 904..19 | 4355 | 99.4 | Minus |
Tret1-1-RB | 1980 | CG30035-RB | 738..1626 | 904..19 | 3225 | 91.2 | Minus |
Tret1-1-RA | 3132 | CG30035-RA | 1890..2778 | 904..19 | 3225 | 91.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11676894..11677311 | 904..487 | 2060 | 99.5 | Minus |
2R | 25286936 | 2R | 11673413..11673830 | 904..487 | 1445 | 89.7 | Minus |
2R | 25286936 | 2R | 11677366..11677657 | 488..197 | 1415 | 99 | Minus |
2R | 25286936 | 2R | 11673888..11674179 | 488..197 | 1205 | 94.2 | Minus |
2R | 25286936 | 2R | 11677713..11677895 | 201..19 | 900 | 99.5 | Minus |
2R | 25286936 | 2R | 11674243..11674428 | 201..19 | 565 | 88.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:22:19 has no hits.
BO14413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:09 Download gff for
BO14413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-PB | 414..1302 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:38 Download gff for
BO14413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-PA | 579..1467 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:41:34 Download gff for
BO14413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-2-RA | 691..1579 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:09 Download gff for
BO14413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-2-RA | 691..1579 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:09 Download gff for
BO14413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11676894..11677311 | 487..904 | 99 | -> | Minus |
2R | 11677368..11677653 | 201..486 | 99 | -> | Minus |
2R | 11677714..11677898 | 15..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:41:34 Download gff for
BO14413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7564399..7564816 | 487..904 | 99 | -> | Minus |
arm_2R | 7564873..7565158 | 201..486 | 99 | -> | Minus |
arm_2R | 7565219..7565403 | 15..200 | 98 | | Minus |
BO14413.5prime Sequence
914 bp (774 high quality bases) assembled on 2006-05-29
> BO14413.5prime
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCA
CCTCCTTTGAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATG
CCACTGGCTGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTAT
CATCACTGCTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGA
CGATTCCTAACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTATCTGGGTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGC
TGCCCACCGCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTG
TGAACCGTGGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCGGATGTGGAGCCCGAACTAAAGGAGTTGATGCAATCTCA
GGCCGATGCCGATCGTCAGGCCACTCAGAACACCTGTTTGGAGCTGTTTA
AGCGAAACAATCTGAAGCCACTTTCCATTTCCTTTGGTCTGATGTTCTTT
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGAT
BO14413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8234-PA | 1467 | CG8234-RA | 1..898 | 17..914 | 4365 | 99.4 | Plus |
CG8234-PB | 1302 | CG8234-RB | 1..733 | 182..914 | 3565 | 99.4 | Plus |
CG30035-PB | 1470 | CG30035-RB | 526..755 | 542..771 | 775 | 93.4 | Plus |
CG30035-PA | 2574 | CG30035-RA | 1630..1859 | 542..771 | 775 | 93.4 | Plus |
CG30035-PB | 1470 | CG30035-RB | 1..176 | 17..192 | 605 | 93.7 | Plus |
CG30035-PB | 1470 | CG30035-RB | 181..366 | 197..382 | 580 | 92.4 | Plus |
CG30035-PA | 2574 | CG30035-RA | 1285..1470 | 197..382 | 580 | 92.4 | Plus |
CG30035-PB | 1470 | CG30035-RB | 772..898 | 788..914 | 460 | 94.4 | Plus |
CG30035-PA | 2574 | CG30035-RA | 1876..2002 | 788..914 | 460 | 94.4 | Plus |
CG30035-PB | 1470 | CG30035-RB | 374..516 | 390..532 | 440 | 92.3 | Plus |
CG30035-PA | 2574 | CG30035-RA | 1478..1620 | 390..532 | 440 | 92.3 | Plus |
CG30035-PA | 2574 | CG30035-RA | 1186..1280 | 98..192 | 375 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-2-RA | 1695 | CG8234-RA | 113..1010 | 17..914 | 4415 | 99.4 | Plus |
Tret1-1-RB | 1980 | CG30035-RB | 160..1057 | 17..914 | 3335 | 91.5 | Plus |
Tret1-1-RA | 3132 | CG30035-RA | 1393..2209 | 98..914 | 3035 | 91.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11676526..11677213 | 227..914 | 3395 | 99.6 | Plus |
2R | 25286936 | 2R | 11673045..11673732 | 227..914 | 2540 | 91.3 | Plus |
2R | 25286936 | 2R | 11676201..11676338 | 90..227 | 630 | 97.1 | Plus |
2R | 25286936 | 2R | 11672706..11672843 | 90..227 | 510 | 91.3 | Plus |
2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 430 | 100 | Plus |
2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:56:59 has no hits.
BO14413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:10 Download gff for
BO14413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:40 Download gff for
BO14413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:58 Download gff for
BO14413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-2-RA | 113..1010 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:02 Download gff for
BO14413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-2-RA | 113..1010 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:02 Download gff for
BO14413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11676047..11676130 | 17..100 | 100 | -> | Plus |
2R | 11676212..11676337 | 101..226 | 98 | -> | Plus |
2R | 11676526..11677213 | 227..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:58 Download gff for
BO14413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7563552..7563635 | 17..100 | 100 | -> | Plus |
arm_2R | 7563717..7563842 | 101..226 | 98 | -> | Plus |
arm_2R | 7564031..7564718 | 227..914 | 99 | | Plus |
BO14413.complete Sequence
1498 bp assembled on 2006-10-11
GenBank Submission: FJ633114
> BO14413.complete
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCA
CCTCCTTTGAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATG
CCACTGGCTGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTAT
CATCACTGCTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGA
CGATTCCTAACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTATCTGGGTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGC
TGCCCACCGCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTG
TGAACCGTGGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCGGATGTGGAGCCCGAACTAAAGGAGTTGATGCAATCTCA
GGCCGATGCCGATCGTCAGGCCACTCAGAACACCTGTTTGGAGCTGTTTA
AGCGAAACAATCTGAAGCCACTTTCCATTTCCTTGGGTCTGATGTTCTTT
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGATCCACAATTGATAGCAATCTTTCCACGATCATCGTGG
GTGTAGTTAACTTTTTTGCTACGTTTATGGGCATCATTCTGATTGATCGG
TTGGGCAGAAAGATTCTTCTGTATGTATCCGACATCGCCATGATCGTGAC
CCTGTCCATTCTGGGCGGCTTCTTCTACTGCAAGGCGCATGGTCCGGATG
TGTCCCATTTGGGTTGGTTGCCACTCACTTGCTTCGTTATCTACATTCTG
GGATTCTCCCTGGGCTTCGGACCCATTCCCTGGCTGATGATGGGTGAGAT
TCTGCCGGCCAAGATTCGAGGACCGGCTGCCTCGGTGGTCACGGCTTTCA
ACTGGTTCTGCACGTTTGTGGTAACCAAGACCTTCCAGGACCTCACGGTT
GCTATGGGCGCGCATGGAGCCTTCTGGCTATTCGGCGCCATCTGCATCGT
GGGTCTGTTCTTTGTGATTATTTTTGTGCCCGAAACGCGGGGCAAATCGT
TGGAGGAAATTGAGCGAAAGATGATGGGCCGTGTGCCCATGTCCTCGGTG
GTCAACATCAAGCCATTTCCTTTCAACATGGCAAGCTTTCTAGACCAT
BO14413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-2-RA | 1467 | CG8234-PA | 1..1464 | 17..1480 | 7215 | 99.5 | Plus |
Tret1-1-RB | 1470 | CG30035-PB | 1..1467 | 17..1480 | 5395 | 91.3 | Plus |
Tret1-1-RA | 2574 | CG30035-PA | 1186..2571 | 98..1480 | 5095 | 91.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-2-RA | 1695 | CG8234-RA | 113..1576 | 17..1480 | 7215 | 99.5 | Plus |
Tret1-1-RB | 1980 | CG30035-RB | 160..1626 | 17..1480 | 5395 | 91.3 | Plus |
Tret1-1-RA | 3132 | CG30035-RA | 1393..2778 | 98..1480 | 5095 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11676526..11677311 | 227..1012 | 3900 | 99.7 | Plus |
2R | 25286936 | 2R | 11673045..11673830 | 227..1012 | 2850 | 90.8 | Plus |
2R | 25286936 | 2R | 11677366..11677657 | 1011..1302 | 1415 | 99 | Plus |
2R | 25286936 | 2R | 11673888..11674179 | 1011..1302 | 1205 | 94.2 | Plus |
2R | 25286936 | 2R | 11677713..11677895 | 1298..1480 | 900 | 99.5 | Plus |
2R | 25286936 | 2R | 11676201..11676338 | 90..227 | 630 | 97.1 | Plus |
2R | 25286936 | 2R | 11674243..11674428 | 1298..1480 | 565 | 88.2 | Plus |
2R | 25286936 | 2R | 11672706..11672843 | 90..227 | 510 | 91.3 | Plus |
2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 430 | 100 | Plus |
2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:18:58 has no hits.
BO14413.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:37 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-RA | 1..1467 | 17..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:29 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-RA | 88..1554 | 17..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:07 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-2-RA | 113..1576 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:38 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8234-RA | 88..1554 | 17..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:38 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tret1-2-RA | 113..1576 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:38 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11676212..11676337 | 101..226 | 98 | -> | Plus |
2R | 11676047..11676130 | 17..100 | 100 | -> | Plus |
2R | 11676526..11677311 | 227..1012 | 99 | -> | Plus |
2R | 11677368..11677653 | 1013..1298 | 99 | -> | Plus |
2R | 11677714..11677895 | 1299..1482 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:07 Download gff for
BO14413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7563552..7563635 | 17..100 | 100 | -> | Plus |
arm_2R | 7563717..7563842 | 101..226 | 98 | -> | Plus |
arm_2R | 7564031..7564816 | 227..1012 | 99 | -> | Plus |
arm_2R | 7564873..7565158 | 1013..1298 | 99 | -> | Plus |
arm_2R | 7565219..7565400 | 1299..1482 | 98 | | Plus |
BO14413.pep Sequence
Translation from 16 to 1498
> BO14413.pep
MKILMRADTHVSFSVPADGLKANFTFSQVLAALSVSLCSLVVGFVSAYTS
PALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRS
TILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGET
LQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLIL
MIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADR
QATQNTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS
TIDSNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILG
GFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKI
RGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFV
IIFVPETRGKSLEEIERKMMGRVPMSSVVNIKPFPFNMASFLDH
BO14413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tret1-2-PA | 488 | CG8234-PA | 1..488 | 1..488 | 2496 | 100 | Plus |
Tret1-1-PB | 489 | CG30035-PB | 1..489 | 1..488 | 2222 | 88.8 | Plus |
Tret1-1-PA | 857 | CG30035-PA | 392..857 | 24..488 | 2130 | 88.6 | Plus |
CG10960-PA | 471 | CG10960-PA | 15..459 | 28..471 | 864 | 41.2 | Plus |
CG10960-PC | 471 | CG10960-PC | 15..459 | 28..471 | 864 | 41.2 | Plus |