Clone Sequence Records
BO14415.3prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-29
> BO14415.3prime
ATGGTCTAGAAAGCTTGCCTGCTTCTGCAGATACTCGTCGAACAGGTAGA
CGGACAGGGATGGGTCGGGGACCTTCATCAGCTTGGCGAGGTCGTTGGCA
TAACCGGACAGCTTGCGCACGCTCTCGGCCTGCTTGCCCAGGAAGTTCTC
CTCGAAGTAGTGGGCCAGCTCGGGATCCCTCTCGGCGTCGGTGGCGTGGG
TGGCACGGGAGTGCACGTGAGTGGCTCCGGTGGCCAGCTGCTTCTCGGTG
TCCAGAGCCAGAGCCAGGGAGTGCAGTTCGTCGACCTCAAGAGTGCCGCG
CTTGGTGCTCACGGAGCCGGAAGACTCGTGGCGGGTGTTGAAGTCAACGA
TTCCTCCGCGACGGGTCACCTGCTTGATCAGGGCAATGCTGTCCTCGAAG
GAGCGGTCCGAGAGTCCCTGGTACAGCTTCTGGAAGCCGGGGCGGTTCTT
CTGGTAGGAGTTGAAGTGGGTGGCCAGCAGGAGGTAGTCGTACGACTTGG
CCAAGTTGGCGTTGATGTAGGACTGGATCTCGGGCTCAATATGGTCAATG
CCAGCAAAACGGGCATTACAAATGGAGTTGGCCGAAAAGGCTGACGTAGA
GCATGCGGAGATTACAGTGTTCTGGCAATATTCATCATCCTTGGCCAAGG
CAAGAGAGCCGAGGCACGCAAAGAGAGCGAGTCGCACGACAAATTTCATG
TCGACTGATAACT
BO14415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1469-PA | 684 | Fer2LCH-RA | 18..681 | 682..19 | 3270 | 99.6 | Minus |
CG1469-PB | 684 | Fer2LCH-RB | 18..681 | 682..19 | 3270 | 99.6 | Minus |
CG1469-PC | 684 | Fer2LCH-RC | 18..681 | 682..19 | 3270 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 1091 | CG1469-RD | 80..766 | 705..19 | 3345 | 99.3 | Minus |
Fer2LCH-RC | 1078 | CG1469-RC | 67..753 | 705..19 | 3345 | 99.3 | Minus |
Fer2LCH-RB | 1443 | CG1469-RB | 432..1118 | 705..19 | 3345 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30389696..30390259 | 582..19 | 2805 | 99.8 | Minus |
3R | 32079331 | 3R | 30389205..30389328 | 705..582 | 545 | 96 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:51:25 has no hits.
BO14415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:13 Download gff for
BO14415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1469-PA | 1..684 | 15..699 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:44 Download gff for
BO14415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1469-PC | 1..684 | 15..699 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:56 Download gff for
BO14415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 424..1122 | 14..713 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:49 Download gff for
BO14415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 424..1122 | 14..713 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:49 Download gff for
BO14415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30389197..30389328 | 582..713 | 94 | -> | Minus |
3R | 30389697..30390263 | 14..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:56 Download gff for
BO14415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26214919..26215050 | 582..713 | 94 | -> | Minus |
arm_3R | 26215419..26215985 | 14..581 | 99 | | Minus |
BO14415.5prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-29
> BO14415.5prime
GAAGTTATCAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGT
GCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACT
GTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAA
TGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACA
TCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCAC
TTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGG
ACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGA
CCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGC
TCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCT
GGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACG
TGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTG
GCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCG
CAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCG
ACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAGAAGCAGGCA
AGCTTTCTAGACC
BO14415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1469-PA | 684 | Fer2LCH-RA | 1..681 | 17..697 | 3380 | 99.8 | Plus |
CG1469-PB | 684 | Fer2LCH-RB | 1..681 | 17..697 | 3380 | 99.8 | Plus |
CG1469-PC | 684 | Fer2LCH-RC | 1..681 | 17..697 | 3380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 1091 | CG1469-RD | 80..766 | 11..697 | 3420 | 99.9 | Plus |
Fer2LCH-RC | 1078 | CG1469-RC | 67..753 | 11..697 | 3420 | 99.9 | Plus |
Fer2LCH-RB | 1443 | CG1469-RB | 432..1118 | 11..697 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30389696..30390259 | 134..697 | 2805 | 99.8 | Plus |
3R | 32079331 | 3R | 30389205..30389328 | 11..134 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:23:20 has no hits.
BO14415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:14 Download gff for
BO14415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1469-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:45 Download gff for
BO14415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1469-PC | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:09:53 Download gff for
BO14415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 423..1122 | 1..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:18 Download gff for
BO14415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 423..1122 | 1..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:18 Download gff for
BO14415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30389194..30389328 | 1..134 | 96 | -> | Plus |
3R | 30389697..30390263 | 135..702 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:09:53 Download gff for
BO14415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26214916..26215050 | 1..134 | 96 | -> | Plus |
arm_3R | 26215419..26215985 | 135..702 | 99 | | Plus |
BO14415.complete Sequence
715 bp assembled on 2006-10-11
GenBank Submission: FJ633115
> BO14415.complete
GAAGTTATCAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGT
GCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACT
GTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAA
TGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACA
TCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCAC
TTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGG
ACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGA
CCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGC
TCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCT
GGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACG
TGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTG
GCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCG
CAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCG
ACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAGAAGCAGGCA
AGCTTTCTAGACCAT
BO14415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 684 | CG1469-PD | 1..681 | 17..697 | 3390 | 99.9 | Plus |
Fer2LCH-RC | 684 | CG1469-PC | 1..681 | 17..697 | 3390 | 99.9 | Plus |
Fer2LCH-RB | 684 | CG1469-PB | 1..681 | 17..697 | 3390 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 1091 | CG1469-RD | 80..766 | 11..697 | 3420 | 99.9 | Plus |
Fer2LCH-RC | 1078 | CG1469-RC | 67..753 | 11..697 | 3420 | 99.9 | Plus |
Fer2LCH-RB | 1443 | CG1469-RB | 432..1118 | 11..697 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30389696..30390259 | 134..697 | 2805 | 99.8 | Plus |
3R | 32079331 | 3R | 30389205..30389328 | 11..134 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:27:45 has no hits.
BO14415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:40 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:31 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 56..757 | 1..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:45:58 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 438..1118 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:41 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 56..757 | 1..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:54 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 438..1118 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:54 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30389211..30389328 | 17..134 | 100 | -> | Plus |
3R | 30389697..30390259 | 135..699 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:45:58 Download gff for
BO14415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26214933..26215050 | 17..134 | 100 | -> | Plus |
arm_3R | 26215419..26215981 | 135..699 | 99 | | Plus |
BO14415.pep Sequence
Translation from 16 to 715
> BO14415.pep
MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG
IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS
FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD
TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY
ANDLAKLMKVPDPSLSVYLFDEYLQKQASFLDH
BO14415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-PD | 227 | CG1469-PD | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PC | 227 | CG1469-PC | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PB | 227 | CG1469-PB | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PA | 227 | CG1469-PA | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PE | 236 | CG1469-PE | 1..236 | 1..227 | 1141 | 96.2 | Plus |