Clone BO14415 Report

Search the DGRC for BO14415

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptFer2LCH-RA
Protein status:BO14415.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO14415.3prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-29

> BO14415.3prime
ATGGTCTAGAAAGCTTGCCTGCTTCTGCAGATACTCGTCGAACAGGTAGA
CGGACAGGGATGGGTCGGGGACCTTCATCAGCTTGGCGAGGTCGTTGGCA
TAACCGGACAGCTTGCGCACGCTCTCGGCCTGCTTGCCCAGGAAGTTCTC
CTCGAAGTAGTGGGCCAGCTCGGGATCCCTCTCGGCGTCGGTGGCGTGGG
TGGCACGGGAGTGCACGTGAGTGGCTCCGGTGGCCAGCTGCTTCTCGGTG
TCCAGAGCCAGAGCCAGGGAGTGCAGTTCGTCGACCTCAAGAGTGCCGCG
CTTGGTGCTCACGGAGCCGGAAGACTCGTGGCGGGTGTTGAAGTCAACGA
TTCCTCCGCGACGGGTCACCTGCTTGATCAGGGCAATGCTGTCCTCGAAG
GAGCGGTCCGAGAGTCCCTGGTACAGCTTCTGGAAGCCGGGGCGGTTCTT
CTGGTAGGAGTTGAAGTGGGTGGCCAGCAGGAGGTAGTCGTACGACTTGG
CCAAGTTGGCGTTGATGTAGGACTGGATCTCGGGCTCAATATGGTCAATG
CCAGCAAAACGGGCATTACAAATGGAGTTGGCCGAAAAGGCTGACGTAGA
GCATGCGGAGATTACAGTGTTCTGGCAATATTCATCATCCTTGGCCAAGG
CAAGAGAGCCGAGGCACGCAAAGAGAGCGAGTCGCACGACAAATTTCATG
TCGACTGATAACT

BO14415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1469-PA 684 Fer2LCH-RA 18..681 682..19 3270 99.6 Minus
CG1469-PB 684 Fer2LCH-RB 18..681 682..19 3270 99.6 Minus
CG1469-PC 684 Fer2LCH-RC 18..681 682..19 3270 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-RD 1091 CG1469-RD 80..766 705..19 3345 99.3 Minus
Fer2LCH-RC 1078 CG1469-RC 67..753 705..19 3345 99.3 Minus
Fer2LCH-RB 1443 CG1469-RB 432..1118 705..19 3345 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30389696..30390259 582..19 2805 99.8 Minus
3R 32079331 3R 30389205..30389328 705..582 545 96 Minus
Blast to na_te.dros performed on 2015-02-11 09:51:25 has no hits.

BO14415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:13 Download gff for BO14415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1469-PA 1..684 15..699 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:44 Download gff for BO14415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1469-PC 1..684 15..699 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:56 Download gff for BO14415.3prime
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 424..1122 14..713 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:49 Download gff for BO14415.3prime
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 424..1122 14..713 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:49 Download gff for BO14415.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30389197..30389328 582..713 94 -> Minus
3R 30389697..30390263 14..581 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:56 Download gff for BO14415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26214919..26215050 582..713 94 -> Minus
arm_3R 26215419..26215985 14..581 99   Minus

BO14415.5prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-29

> BO14415.5prime
GAAGTTATCAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGT
GCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACT
GTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAA
TGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACA
TCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCAC
TTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGG
ACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGA
CCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGC
TCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCT
GGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACG
TGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTG
GCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCG
CAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCG
ACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAGAAGCAGGCA
AGCTTTCTAGACC

BO14415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1469-PA 684 Fer2LCH-RA 1..681 17..697 3380 99.8 Plus
CG1469-PB 684 Fer2LCH-RB 1..681 17..697 3380 99.8 Plus
CG1469-PC 684 Fer2LCH-RC 1..681 17..697 3380 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-RD 1091 CG1469-RD 80..766 11..697 3420 99.9 Plus
Fer2LCH-RC 1078 CG1469-RC 67..753 11..697 3420 99.9 Plus
Fer2LCH-RB 1443 CG1469-RB 432..1118 11..697 3420 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30389696..30390259 134..697 2805 99.8 Plus
3R 32079331 3R 30389205..30389328 11..134 620 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:23:20 has no hits.

BO14415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:14 Download gff for BO14415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1469-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:45 Download gff for BO14415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1469-PC 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:09:53 Download gff for BO14415.5prime
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 423..1122 1..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:18 Download gff for BO14415.5prime
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 423..1122 1..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:18 Download gff for BO14415.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30389194..30389328 1..134 96 -> Plus
3R 30389697..30390263 135..702 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:09:53 Download gff for BO14415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26214916..26215050 1..134 96 -> Plus
arm_3R 26215419..26215985 135..702 99   Plus

BO14415.complete Sequence

715 bp assembled on 2006-10-11

GenBank Submission: FJ633115

> BO14415.complete
GAAGTTATCAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGT
GCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACT
GTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAA
TGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACA
TCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCAC
TTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGG
ACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGA
CCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGC
TCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCT
GGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACG
TGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTG
GCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCG
CAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCG
ACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAGAAGCAGGCA
AGCTTTCTAGACCAT

BO14415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-RD 684 CG1469-PD 1..681 17..697 3390 99.9 Plus
Fer2LCH-RC 684 CG1469-PC 1..681 17..697 3390 99.9 Plus
Fer2LCH-RB 684 CG1469-PB 1..681 17..697 3390 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-RD 1091 CG1469-RD 80..766 11..697 3420 99.9 Plus
Fer2LCH-RC 1078 CG1469-RC 67..753 11..697 3420 99.9 Plus
Fer2LCH-RB 1443 CG1469-RB 432..1118 11..697 3420 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30389696..30390259 134..697 2805 99.8 Plus
3R 32079331 3R 30389205..30389328 11..134 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:27:45 has no hits.

BO14415.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:40 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RC 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:31 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RC 56..757 1..702 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:45:58 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 438..1118 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:41 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RC 56..757 1..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:54 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 438..1118 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:54 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30389211..30389328 17..134 100 -> Plus
3R 30389697..30390259 135..699 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:45:58 Download gff for BO14415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26214933..26215050 17..134 100 -> Plus
arm_3R 26215419..26215981 135..699 99   Plus

BO14415.pep Sequence

Translation from 16 to 715

> BO14415.pep
MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG
IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS
FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD
TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY
ANDLAKLMKVPDPSLSVYLFDEYLQKQASFLDH

BO14415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-PD 227 CG1469-PD 1..227 1..227 1161 100 Plus
Fer2LCH-PC 227 CG1469-PC 1..227 1..227 1161 100 Plus
Fer2LCH-PB 227 CG1469-PB 1..227 1..227 1161 100 Plus
Fer2LCH-PA 227 CG1469-PA 1..227 1..227 1161 100 Plus
Fer2LCH-PE 236 CG1469-PE 1..236 1..227 1141 96.2 Plus