Clone Sequence Records
BO14418.3prime Sequence
801 bp (800 high quality bases) assembled on 2006-05-29
> BO14418.3prime
ATGGTCTAGAAAGCTTGCGACGCAAGTCGTGGTTACGCGGGTCAATCTGG
TCATTTCGGTGCTGCCAAAGTGCCGCTTCATAAACAGCGATCGGAAGGTG
GTCCGGAACTGTTTCGACATCAGACCGTACAGCACGAATCCCACGGCGGC
GTTGATCAGCGCCAGCAGATCCATCAGCTCTCCAAACGGCGGATAGCAGT
GGGCGAAGAAGCACTTCTCCATCACTCCGGACAGCAGACCAAGTAATCCC
TGCGGAAACTCTGTGATCAGAAACAAAACCAGCACCGCAACCAGCAAAAG
GGTAGTCCGATCGTTTCGGCGATCACAGCGAGGAGGCTTCTTGGATTTGG
TTTCATTCAGATTAAGCTGGATGGCATATTTGGCGGGATTGTTGTAATCC
CTCAGCTTCAAGCGACGTCTCGATGCCTCGCACAAAACGTGCATAAGTAC
TGCACTGATCACAATTAATATGCCGCACGGCAGAAGTTTGATGAGCACGG
AATGTATCCAGAAGTTGAATCTGTAGAGCACCGAGTCCTTATCGAAGTAA
ACGTGATACATGGCCTCCGAGTTGACCTTGTCCACGTCGTACGTCTCACG
CACCTGGAACACAAAGTACGTGGGCAGGCAGAGGATCGGCGACAGGATGA
AGGGCAGGAGGATCGCCTCCCGGGAATGTGCTAGCAGGAAATTGGCACAG
CCCCCGTTCGGATGTCTGATAGCCACATACCGCCACACCGCCAGCGTGAC
AGTCAGTCCGATGGAAATCGTATGCAGGATCTGCGTGAAGTGCATGTGAA
C
BO14418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-PA | 1245 | CG13229-RA | 460..1242 | 801..19 | 3615 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-RC | 2361 | CG13229-RC | 850..1632 | 801..19 | 3735 | 98.5 | Minus |
CG13229-RB | 2509 | CG13229-RB | 998..1780 | 801..19 | 3735 | 98.5 | Minus |
CG13229-RA | 1557 | CG13229-RA | 611..1393 | 801..19 | 3735 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11140033..11140351 | 19..337 | 1490 | 97.8 | Plus |
2R | 25286936 | 2R | 11140800..11140997 | 521..718 | 945 | 98.5 | Plus |
2R | 25286936 | 2R | 11140530..11140717 | 337..524 | 940 | 100 | Plus |
2R | 25286936 | 2R | 11141210..11141295 | 716..801 | 400 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:53:11 has no hits.
BO14418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:19 Download gff for
BO14418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-PA | 460..1245 | 18..801 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:52 Download gff for
BO14418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-PA | 460..1245 | 18..801 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:32:55 Download gff for
BO14418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 611..1398 | 11..801 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:30 Download gff for
BO14418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 611..1398 | 11..801 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:30 Download gff for
BO14418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11140028..11140351 | 11..337 | 96 | <- | Plus |
2R | 11140531..11140713 | 338..520 | 100 | <- | Plus |
2R | 11140800..11140994 | 521..715 | 98 | <- | Plus |
2R | 11141210..11141295 | 716..801 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:32:55 Download gff for
BO14418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7027533..7027856 | 11..337 | 96 | <- | Plus |
arm_2R | 7028036..7028218 | 338..520 | 100 | <- | Plus |
arm_2R | 7028305..7028499 | 521..715 | 98 | <- | Plus |
arm_2R | 7028715..7028800 | 716..801 | 97 | | Plus |
BO14418.5prime Sequence
885 bp (872 high quality bases) assembled on 2006-05-29
> BO14418.5prime
GAAGTTATCAGTCGACATGATGCAAGAGACCGGCAATCAAATGGGACAGA
CCCATATGCACCAGCGGGTTCCTTTCAACGACACGGTTCTGAAGGACTAT
CATCTCACGAGCACCGATATCGAGAAGTTTGTAAAGCTATGGCAGGAGTA
CCAGATGAAGAACATGACCCCTCAGGTGGATGAGTGCCAGGGCTATTGCC
AGGGGGAAATATACAACTGGTTGCGAGCCTACAACAGCATCCATGGATAC
GTTTCGCTGATGATTTGCATTTTCGGGACAATAGCAAACATCTTGAACAT
AATGGTCCTGACCAGAAAGGAAATGGCCAAGACGCCCATAAATAATATAC
TTAAGTGGCTGGCGGTGGCCGATATGTTTGTGATGCTGGAATATATACCC
TATACATCGTATCAGTATATCTATATGGGGCCAGGTGAAAAAGATTTGAG
CTACACCTGGGCGGTTTGTCTGCTGGTTCACATGCACTTCACGCAGATCC
TGCATACGATTTCCATCGGACTGACTGTCACGCTGGCGGTGTGGCGGTAT
GTGGCTATCAGACATCCGAACGGGGGCTGTGCCAATTTCCTGCTAGCACA
TTCCCGGGAGGCGATCCTCCTGCCCTTCATCCTGTCGCCGATCCTCTGCC
TGCCCACGTACTTTGTGTTCCAGGTGCGTGAGACGTACGACGTGGACAAG
GTCAACTCGGAGGCCATGTATCACGTTTACTTCGATAAGGACTCGGTGCT
CTACAGATTCAACTTCTGGATACATTCCGTGCTCATCAAACTTCTGCCGT
GCGGCATATTAATTGTGATCAGTGCAGTACTTATGCACGTTTTGTGCGAG
GCATCGAGACGTCGCTTGAAGCTGAGGGATTACAA
BO14418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-PA | 1245 | CG13229-RA | 1..869 | 17..885 | 4195 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-RC | 2361 | CG13229-RC | 391..1259 | 17..885 | 4255 | 99.3 | Plus |
CG13229-RB | 2509 | CG13229-RB | 539..1407 | 17..885 | 4255 | 99.3 | Plus |
CG13229-RA | 1557 | CG13229-RA | 152..1020 | 17..885 | 4255 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11142684..11142929 | 262..17 | 1230 | 100 | Minus |
2R | 25286936 | 2R | 11140800..11140997 | 756..559 | 945 | 98.5 | Minus |
2R | 25286936 | 2R | 11141677..11141851 | 436..262 | 860 | 99.4 | Minus |
2R | 25286936 | 2R | 11140585..11140717 | 885..753 | 665 | 100 | Minus |
2R | 25286936 | 2R | 11141210..11141339 | 561..432 | 620 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:40:57 has no hits.
BO14418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:20 Download gff for
BO14418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:54 Download gff for
BO14418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:10 Download gff for
BO14418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 140..1018 | 3..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:39 Download gff for
BO14418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 140..1018 | 3..883 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:39 Download gff for
BO14418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11142684..11142941 | 3..262 | 98 | | Minus |
2R | 11140587..11140713 | 757..883 | 100 | <- | Minus |
2R | 11140800..11140994 | 562..756 | 98 | <- | Minus |
2R | 11141210..11141336 | 435..561 | 98 | <- | Minus |
2R | 11141679..11141850 | 263..434 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:10 Download gff for
BO14418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7028092..7028218 | 757..883 | 100 | <- | Minus |
arm_2R | 7028305..7028499 | 562..756 | 98 | <- | Minus |
arm_2R | 7028715..7028841 | 435..561 | 98 | <- | Minus |
arm_2R | 7029184..7029355 | 263..434 | 99 | <- | Minus |
arm_2R | 7030189..7030446 | 3..262 | 98 | | Minus |
BO14418.complete Sequence
1276 bp assembled on 2006-10-11
GenBank Submission: FJ633116
> BO14418.complete
GAAGTTATCAGTCGACATGATGCAAGAGACCGGCAATCAAATGGGACAGA
CCCATATGCACCAGCGGGTTCCTTTCAACGACACGGTTCTGAAGGACTAT
CATCTCACGAGCACCGATATCGAGAAGTTTGTAAAGCTATGGCAGGAGTA
CCAGATGAAGAACATGACCCCTCAGGTGGATGAGTGCCAGGGCTATTGCC
AGGGGGAAATATACAACTGGTTGCGAGCCTACAACAGCATCCATGGATAC
GTTTCGCTGATGATTTGCATTTTCGGGACAATAGCAAACATCTTGAACAT
AATGGTCCTGACCAGAAAGGAAATGGCCAAGACGCCCATAAATAATATAC
TTAAGTGGCTGGCGGTGGCCGATATGTTTGTGATGCTGGAATATATACCC
TATACATCGTATCAGTATATCTATATGGGGCCAGGTGAAAAAGATTTGAG
CTACACCTGGGCGGTTTGTCTGCTGGTTCACATGCACTTCACGCAGATCC
TGCATACGATTTCCATCGGACTGACTGTCACGCTGGCGGTGTGGCGGTAT
GTGGCTATCAGACATCCGAACGGGGGCTGTGCCAATTTCCTGCTAGCACA
TTCCCGGGAGGCGATCCTCCTGCCCTTCATCCTGTCGCCGATCCTCTGCC
TGCCCACGTACTTTGTGTTCCAGGTGCGTGAGACGTACGACGTGGACAAG
GTCAACTCGGAGGCCATGTATCACGTTTACTTCGATAAGGACTCGGTGCT
CTACAGATTCAACTTCTGGATACATTCCGTGCTCATCAAACTTCTGCCGT
GCGGCATATTAATTGTGATCAGTGCAGTACTTATGCACGTTTTGTGCGAG
GCATCGAGACGTCGCTTGAAGCTGAGGGATTACAACAATCCCGCCAAATA
TGCCATCCAGCTTAATCTGAATGAAACCAAATCCAAGAAGCCTCCTCGCT
GTGATCGCCGAAACGATCGGACTACCCTTTTGCTGGTTGCGGTGCTGGTT
TTGTTTCTGATCACAGAGTTTCCGCAGGGATTACTTGGTCTGCTGTCCGG
AGTGATGGAGAAGTGCTTCTTCGCCCACTGCTATCCGCCGTTTGGAGAGC
TGATGGATCTGCTGGCGCTGATCAACGCCGCCGTGGGATTCGTGCTGTAC
GGTCTGATGTCGAAACAGTTCCGGACCACCTTCCGATCGCTGTTTATGAA
GCGGCACTTTGGCAGCACCGAAATGACCAGATTGACCCGCGTAACCACGA
CTTGCGTCGCAAGCTTTCTAGACCAT
BO14418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-RC | 1245 | CG13229-PC | 1..1242 | 17..1258 | 6015 | 99 | Plus |
CG13229-RB | 1245 | CG13229-PB | 1..1242 | 17..1258 | 6015 | 99 | Plus |
CG13229-RA | 1245 | CG13229-PA | 1..1242 | 17..1258 | 6015 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-RC | 2361 | CG13229-RC | 391..1632 | 17..1258 | 6015 | 99 | Plus |
CG13229-RB | 2509 | CG13229-RB | 539..1780 | 17..1258 | 6015 | 99 | Plus |
CG13229-RA | 1557 | CG13229-RA | 152..1393 | 17..1258 | 6015 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11140033..11140351 | 1258..940 | 1490 | 97.8 | Minus |
2R | 25286936 | 2R | 11142684..11142929 | 262..17 | 1230 | 100 | Minus |
2R | 25286936 | 2R | 11140800..11140997 | 756..559 | 945 | 98.5 | Minus |
2R | 25286936 | 2R | 11140530..11140717 | 940..753 | 940 | 100 | Minus |
2R | 25286936 | 2R | 11141677..11141851 | 436..262 | 860 | 99.4 | Minus |
2R | 25286936 | 2R | 11141210..11141339 | 561..432 | 620 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:16 has no hits.
BO14418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:47 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 1..1245 | 17..1259 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:32 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 140..1398 | 3..1266 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:17 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 152..1393 | 17..1260 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:48 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 140..1398 | 3..1266 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:46 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13229-RA | 152..1393 | 17..1260 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:46 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11140800..11140994 | 562..756 | 98 | <- | Minus |
2R | 11141210..11141336 | 435..561 | 98 | <- | Minus |
2R | 11141679..11141850 | 263..434 | 99 | <- | Minus |
2R | 11142684..11142929 | 17..262 | 100 | | Minus |
2R | 11140031..11140351 | 940..1260 | 97 | <- | Minus |
2R | 11140531..11140713 | 757..939 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:17 Download gff for
BO14418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7030189..7030434 | 17..262 | 100 | | Minus |
arm_2R | 7027536..7027856 | 940..1260 | 97 | <- | Minus |
arm_2R | 7028036..7028218 | 757..939 | 100 | <- | Minus |
arm_2R | 7028305..7028499 | 562..756 | 98 | <- | Minus |
arm_2R | 7028715..7028841 | 435..561 | 98 | <- | Minus |
arm_2R | 7029184..7029355 | 263..434 | 99 | <- | Minus |
BO14418.pep Sequence
Translation from 16 to 1276
> BO14418.pep
MMQETGNQMGQTHMHQRVPFNDTVLKDYHLTSTDIEKFVKLWQEYQMKNM
TPQVDECQGYCQGEIYNWLRAYNSIHGYVSLMICIFGTIANILNIMVLTR
KEMAKTPINNILKWLAVADMFVMLEYIPYTSYQYIYMGPGEKDLSYTWAV
CLLVHMHFTQILHTISIGLTVTLAVWRYVAIRHPNGGCANFLLAHSREAI
LLPFILSPILCLPTYFVFQVRETYDVDKVNSEAMYHVYFDKDSVLYRFNF
WIHSVLIKLLPCGILIVISAVLMHVLCEASRRRLKLRDYNNPAKYAIQLN
LNETKSKKPPRCDRRNDRTTLLLVAVLVLFLITEFPQGLLGLLSGVMEKC
FFAHCYPPFGELMDLLALINAAVGFVLYGLMSKQFRTTFRSLFMKRHFGS
TEMTRLTRVTTTCVASFLDH
BO14418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13229-PC | 414 | CG13229-PC | 1..414 | 1..414 | 2197 | 100 | Plus |
CG13229-PB | 414 | CG13229-PB | 1..414 | 1..414 | 2197 | 100 | Plus |
CG13229-PA | 414 | CG13229-PA | 1..414 | 1..414 | 2197 | 100 | Plus |
MsR1-PA | 478 | CG8985-PA | 12..201 | 60..247 | 372 | 43.1 | Plus |
MsR1-PB | 556 | CG8985-PB | 12..201 | 60..247 | 372 | 43.1 | Plus |
MsR1-PA | 478 | CG8985-PA | 248..424 | 229..393 | 315 | 42.9 | Plus |