Clone BO14418 Report

Search the DGRC for BO14418

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG13229-RA
Protein status:BO14418.pep: validated full length
Sequenced Size:1276

Clone Sequence Records

BO14418.3prime Sequence

801 bp (800 high quality bases) assembled on 2006-05-29

> BO14418.3prime
ATGGTCTAGAAAGCTTGCGACGCAAGTCGTGGTTACGCGGGTCAATCTGG
TCATTTCGGTGCTGCCAAAGTGCCGCTTCATAAACAGCGATCGGAAGGTG
GTCCGGAACTGTTTCGACATCAGACCGTACAGCACGAATCCCACGGCGGC
GTTGATCAGCGCCAGCAGATCCATCAGCTCTCCAAACGGCGGATAGCAGT
GGGCGAAGAAGCACTTCTCCATCACTCCGGACAGCAGACCAAGTAATCCC
TGCGGAAACTCTGTGATCAGAAACAAAACCAGCACCGCAACCAGCAAAAG
GGTAGTCCGATCGTTTCGGCGATCACAGCGAGGAGGCTTCTTGGATTTGG
TTTCATTCAGATTAAGCTGGATGGCATATTTGGCGGGATTGTTGTAATCC
CTCAGCTTCAAGCGACGTCTCGATGCCTCGCACAAAACGTGCATAAGTAC
TGCACTGATCACAATTAATATGCCGCACGGCAGAAGTTTGATGAGCACGG
AATGTATCCAGAAGTTGAATCTGTAGAGCACCGAGTCCTTATCGAAGTAA
ACGTGATACATGGCCTCCGAGTTGACCTTGTCCACGTCGTACGTCTCACG
CACCTGGAACACAAAGTACGTGGGCAGGCAGAGGATCGGCGACAGGATGA
AGGGCAGGAGGATCGCCTCCCGGGAATGTGCTAGCAGGAAATTGGCACAG
CCCCCGTTCGGATGTCTGATAGCCACATACCGCCACACCGCCAGCGTGAC
AGTCAGTCCGATGGAAATCGTATGCAGGATCTGCGTGAAGTGCATGTGAA
C

BO14418.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-PA 1245 CG13229-RA 460..1242 801..19 3615 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-RC 2361 CG13229-RC 850..1632 801..19 3735 98.5 Minus
CG13229-RB 2509 CG13229-RB 998..1780 801..19 3735 98.5 Minus
CG13229-RA 1557 CG13229-RA 611..1393 801..19 3735 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11140033..11140351 19..337 1490 97.8 Plus
2R 25286936 2R 11140800..11140997 521..718 945 98.5 Plus
2R 25286936 2R 11140530..11140717 337..524 940 100 Plus
2R 25286936 2R 11141210..11141295 716..801 400 97.7 Plus
Blast to na_te.dros performed on 2015-02-11 15:53:11 has no hits.

BO14418.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:19 Download gff for BO14418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-PA 460..1245 18..801 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:52 Download gff for BO14418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-PA 460..1245 18..801 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:32:55 Download gff for BO14418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 611..1398 11..801 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:30 Download gff for BO14418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 611..1398 11..801 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:30 Download gff for BO14418.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11140028..11140351 11..337 96 <- Plus
2R 11140531..11140713 338..520 100 <- Plus
2R 11140800..11140994 521..715 98 <- Plus
2R 11141210..11141295 716..801 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:32:55 Download gff for BO14418.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7027533..7027856 11..337 96 <- Plus
arm_2R 7028036..7028218 338..520 100 <- Plus
arm_2R 7028305..7028499 521..715 98 <- Plus
arm_2R 7028715..7028800 716..801 97   Plus

BO14418.5prime Sequence

885 bp (872 high quality bases) assembled on 2006-05-29

> BO14418.5prime
GAAGTTATCAGTCGACATGATGCAAGAGACCGGCAATCAAATGGGACAGA
CCCATATGCACCAGCGGGTTCCTTTCAACGACACGGTTCTGAAGGACTAT
CATCTCACGAGCACCGATATCGAGAAGTTTGTAAAGCTATGGCAGGAGTA
CCAGATGAAGAACATGACCCCTCAGGTGGATGAGTGCCAGGGCTATTGCC
AGGGGGAAATATACAACTGGTTGCGAGCCTACAACAGCATCCATGGATAC
GTTTCGCTGATGATTTGCATTTTCGGGACAATAGCAAACATCTTGAACAT
AATGGTCCTGACCAGAAAGGAAATGGCCAAGACGCCCATAAATAATATAC
TTAAGTGGCTGGCGGTGGCCGATATGTTTGTGATGCTGGAATATATACCC
TATACATCGTATCAGTATATCTATATGGGGCCAGGTGAAAAAGATTTGAG
CTACACCTGGGCGGTTTGTCTGCTGGTTCACATGCACTTCACGCAGATCC
TGCATACGATTTCCATCGGACTGACTGTCACGCTGGCGGTGTGGCGGTAT
GTGGCTATCAGACATCCGAACGGGGGCTGTGCCAATTTCCTGCTAGCACA
TTCCCGGGAGGCGATCCTCCTGCCCTTCATCCTGTCGCCGATCCTCTGCC
TGCCCACGTACTTTGTGTTCCAGGTGCGTGAGACGTACGACGTGGACAAG
GTCAACTCGGAGGCCATGTATCACGTTTACTTCGATAAGGACTCGGTGCT
CTACAGATTCAACTTCTGGATACATTCCGTGCTCATCAAACTTCTGCCGT
GCGGCATATTAATTGTGATCAGTGCAGTACTTATGCACGTTTTGTGCGAG
GCATCGAGACGTCGCTTGAAGCTGAGGGATTACAA

BO14418.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-PA 1245 CG13229-RA 1..869 17..885 4195 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-RC 2361 CG13229-RC 391..1259 17..885 4255 99.3 Plus
CG13229-RB 2509 CG13229-RB 539..1407 17..885 4255 99.3 Plus
CG13229-RA 1557 CG13229-RA 152..1020 17..885 4255 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11142684..11142929 262..17 1230 100 Minus
2R 25286936 2R 11140800..11140997 756..559 945 98.5 Minus
2R 25286936 2R 11141677..11141851 436..262 860 99.4 Minus
2R 25286936 2R 11140585..11140717 885..753 665 100 Minus
2R 25286936 2R 11141210..11141339 561..432 620 98.5 Minus
Blast to na_te.dros performed on 2015-02-11 09:40:57 has no hits.

BO14418.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:20 Download gff for BO14418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:54 Download gff for BO14418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:10 Download gff for BO14418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 140..1018 3..883 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:39 Download gff for BO14418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 140..1018 3..883 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:39 Download gff for BO14418.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11142684..11142941 3..262 98   Minus
2R 11140587..11140713 757..883 100 <- Minus
2R 11140800..11140994 562..756 98 <- Minus
2R 11141210..11141336 435..561 98 <- Minus
2R 11141679..11141850 263..434 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:10 Download gff for BO14418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7028092..7028218 757..883 100 <- Minus
arm_2R 7028305..7028499 562..756 98 <- Minus
arm_2R 7028715..7028841 435..561 98 <- Minus
arm_2R 7029184..7029355 263..434 99 <- Minus
arm_2R 7030189..7030446 3..262 98   Minus

BO14418.complete Sequence

1276 bp assembled on 2006-10-11

GenBank Submission: FJ633116

> BO14418.complete
GAAGTTATCAGTCGACATGATGCAAGAGACCGGCAATCAAATGGGACAGA
CCCATATGCACCAGCGGGTTCCTTTCAACGACACGGTTCTGAAGGACTAT
CATCTCACGAGCACCGATATCGAGAAGTTTGTAAAGCTATGGCAGGAGTA
CCAGATGAAGAACATGACCCCTCAGGTGGATGAGTGCCAGGGCTATTGCC
AGGGGGAAATATACAACTGGTTGCGAGCCTACAACAGCATCCATGGATAC
GTTTCGCTGATGATTTGCATTTTCGGGACAATAGCAAACATCTTGAACAT
AATGGTCCTGACCAGAAAGGAAATGGCCAAGACGCCCATAAATAATATAC
TTAAGTGGCTGGCGGTGGCCGATATGTTTGTGATGCTGGAATATATACCC
TATACATCGTATCAGTATATCTATATGGGGCCAGGTGAAAAAGATTTGAG
CTACACCTGGGCGGTTTGTCTGCTGGTTCACATGCACTTCACGCAGATCC
TGCATACGATTTCCATCGGACTGACTGTCACGCTGGCGGTGTGGCGGTAT
GTGGCTATCAGACATCCGAACGGGGGCTGTGCCAATTTCCTGCTAGCACA
TTCCCGGGAGGCGATCCTCCTGCCCTTCATCCTGTCGCCGATCCTCTGCC
TGCCCACGTACTTTGTGTTCCAGGTGCGTGAGACGTACGACGTGGACAAG
GTCAACTCGGAGGCCATGTATCACGTTTACTTCGATAAGGACTCGGTGCT
CTACAGATTCAACTTCTGGATACATTCCGTGCTCATCAAACTTCTGCCGT
GCGGCATATTAATTGTGATCAGTGCAGTACTTATGCACGTTTTGTGCGAG
GCATCGAGACGTCGCTTGAAGCTGAGGGATTACAACAATCCCGCCAAATA
TGCCATCCAGCTTAATCTGAATGAAACCAAATCCAAGAAGCCTCCTCGCT
GTGATCGCCGAAACGATCGGACTACCCTTTTGCTGGTTGCGGTGCTGGTT
TTGTTTCTGATCACAGAGTTTCCGCAGGGATTACTTGGTCTGCTGTCCGG
AGTGATGGAGAAGTGCTTCTTCGCCCACTGCTATCCGCCGTTTGGAGAGC
TGATGGATCTGCTGGCGCTGATCAACGCCGCCGTGGGATTCGTGCTGTAC
GGTCTGATGTCGAAACAGTTCCGGACCACCTTCCGATCGCTGTTTATGAA
GCGGCACTTTGGCAGCACCGAAATGACCAGATTGACCCGCGTAACCACGA
CTTGCGTCGCAAGCTTTCTAGACCAT

BO14418.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-RC 1245 CG13229-PC 1..1242 17..1258 6015 99 Plus
CG13229-RB 1245 CG13229-PB 1..1242 17..1258 6015 99 Plus
CG13229-RA 1245 CG13229-PA 1..1242 17..1258 6015 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-RC 2361 CG13229-RC 391..1632 17..1258 6015 99 Plus
CG13229-RB 2509 CG13229-RB 539..1780 17..1258 6015 99 Plus
CG13229-RA 1557 CG13229-RA 152..1393 17..1258 6015 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11140033..11140351 1258..940 1490 97.8 Minus
2R 25286936 2R 11142684..11142929 262..17 1230 100 Minus
2R 25286936 2R 11140800..11140997 756..559 945 98.5 Minus
2R 25286936 2R 11140530..11140717 940..753 940 100 Minus
2R 25286936 2R 11141677..11141851 436..262 860 99.4 Minus
2R 25286936 2R 11141210..11141339 561..432 620 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 14:38:16 has no hits.

BO14418.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:47 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 1..1245 17..1259 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:32 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 140..1398 3..1266 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:17 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 152..1393 17..1260 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:48 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 140..1398 3..1266 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:46 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13229-RA 152..1393 17..1260 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:46 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11140800..11140994 562..756 98 <- Minus
2R 11141210..11141336 435..561 98 <- Minus
2R 11141679..11141850 263..434 99 <- Minus
2R 11142684..11142929 17..262 100   Minus
2R 11140031..11140351 940..1260 97 <- Minus
2R 11140531..11140713 757..939 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:17 Download gff for BO14418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7030189..7030434 17..262 100   Minus
arm_2R 7027536..7027856 940..1260 97 <- Minus
arm_2R 7028036..7028218 757..939 100 <- Minus
arm_2R 7028305..7028499 562..756 98 <- Minus
arm_2R 7028715..7028841 435..561 98 <- Minus
arm_2R 7029184..7029355 263..434 99 <- Minus

BO14418.pep Sequence

Translation from 16 to 1276

> BO14418.pep
MMQETGNQMGQTHMHQRVPFNDTVLKDYHLTSTDIEKFVKLWQEYQMKNM
TPQVDECQGYCQGEIYNWLRAYNSIHGYVSLMICIFGTIANILNIMVLTR
KEMAKTPINNILKWLAVADMFVMLEYIPYTSYQYIYMGPGEKDLSYTWAV
CLLVHMHFTQILHTISIGLTVTLAVWRYVAIRHPNGGCANFLLAHSREAI
LLPFILSPILCLPTYFVFQVRETYDVDKVNSEAMYHVYFDKDSVLYRFNF
WIHSVLIKLLPCGILIVISAVLMHVLCEASRRRLKLRDYNNPAKYAIQLN
LNETKSKKPPRCDRRNDRTTLLLVAVLVLFLITEFPQGLLGLLSGVMEKC
FFAHCYPPFGELMDLLALINAAVGFVLYGLMSKQFRTTFRSLFMKRHFGS
TEMTRLTRVTTTCVASFLDH

BO14418.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13229-PC 414 CG13229-PC 1..414 1..414 2197 100 Plus
CG13229-PB 414 CG13229-PB 1..414 1..414 2197 100 Plus
CG13229-PA 414 CG13229-PA 1..414 1..414 2197 100 Plus
MsR1-PA 478 CG8985-PA 12..201 60..247 372 43.1 Plus
MsR1-PB 556 CG8985-PB 12..201 60..247 372 43.1 Plus
MsR1-PA 478 CG8985-PA 248..424 229..393 315 42.9 Plus