Clone BO14419 Report

Search the DGRC for BO14419

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG17717-RB
Protein status:BO14419.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO14419.3prime Sequence

812 bp (791 high quality bases) assembled on 2006-05-29

> BO14419.3prime
ATGGTCTAGAAAGCTTGCATCATCGAAAAAATCGATGGAATCATCCTCAA
TCTCCACCAGCTCAAAATCGGAGGTGCTGCCAAACATCCACCAGTGGCTG
AGAATGTTCCGGATGAGCATAAATCGTGTGGTGACAAACTCAAAGAAGTG
GAAGAAAAGTGCACTGGAGGTCAGAAGGGCACAAGAGGCGACAAACACCT
CCTGGACGGTTAACTGATCGGTGCTGCCCTGATTCATATTATCCATGCAC
TGCAGCACCTGCTGCAAGATGATATGGGCTAGTGGCATTAGCGAGGCGCT
AAATAGCAGATGCTTCACAATCAGGCCGCAACAACGGCCGCAGCAGAAGG
TTCGGATCATTTGCTTCAGACTGGCCCGCTCCTCCGCGATATTAAAGACC
GCATTGCAGATCTCACAGCGATTATCCCGCCTGTGCATGATCCAGCGCTT
CAAGCACACGCTGCCCTTGCAGTTGCAGGGACATTTGATGATCTCCATGT
CGTTGCGGTTCCAGCGGCAGATGCGGCACGAGTTGCCGCTTTCGTTCGCC
GAATGGAGGCTCTCCTGTAGGTGACTTCGCAGCATCCGTTGTCGTGCTGA
GGATATTTCCAGTGCTGCCGTGGATGCAGTGGGCGTGCCATGTGCCGATG
CTACGATTTGCGACGAGCAGATTGCTTCAGCTGCCGCTGACTGAGGCGGC
TGAGCGCCGAGTGGCATTGTGGCATTGCCGGCTGACTCCAGACCGTTAAT
CAGACGAAGGGCAGCGGCCTCGGAAAGAACGTGTTGATGATGCCCCATGT
CGACTGATAACT

BO14419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 783 CG17717-RB 6..780 793..19 3800 99.6 Minus
CG17717-PA 801 CG17717-RA 360..798 457..19 2170 99.7 Minus
CG17717-PA 801 CG17717-RA 6..342 793..457 1635 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1074 CG17717-RB 207..981 793..19 3830 99.6 Minus
CG17717-RA 1092 CG17717-RA 207..999 793..19 3640 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589496..6589832 793..457 1655 99.4 Minus
X 23542271 X 6590311..6590553 261..19 1200 99.6 Minus
X 23542271 X 6590050..6590251 457..256 1010 100 Minus
Blast to na_te.dros performed 2015-02-02 19:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 324..402 108 62.7 Plus

BO14419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:21 Download gff for BO14419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-PB 1..783 18..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:56 Download gff for BO14419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-PB 1..783 18..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:53:03 Download gff for BO14419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..985 13..805 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:45 Download gff for BO14419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..985 13..805 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:45 Download gff for BO14419.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6589485..6589832 457..805 97 -> Minus
X 6590051..6590248 259..456 100 -> Minus
X 6590314..6590557 13..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:53:03 Download gff for BO14419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6484084..6484281 259..456 100 -> Minus
arm_X 6484347..6484590 13..258 98   Minus
arm_X 6483518..6483865 457..805 97 -> Minus

BO14419.5prime Sequence

812 bp (811 high quality bases) assembled on 2006-05-29

> BO14419.5prime
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCGATGATGCAA
GCTTTCTAGACC

BO14419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 783 CG17717-RB 1..780 17..796 3825 99.6 Plus
CG17717-PA 801 CG17717-RA 360..798 358..796 2170 99.7 Plus
CG17717-PA 801 CG17717-RA 1..342 17..358 1660 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1074 CG17717-RB 202..981 17..796 3855 99.6 Plus
CG17717-RA 1092 CG17717-RA 202..999 17..796 3665 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589491..6589832 17..358 1680 99.4 Plus
X 23542271 X 6590311..6590553 554..796 1200 99.6 Plus
X 23542271 X 6590050..6590251 358..559 1010 100 Plus
Blast to na_te.dros performed 2015-02-11 13:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 491..413 108 62.7 Minus

BO14419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:21 Download gff for BO14419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-PB 1..783 17..797 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:57 Download gff for BO14419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-PB 1..783 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:30 Download gff for BO14419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..985 10..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:58 Download gff for BO14419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..985 10..802 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:58 Download gff for BO14419.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6589485..6589832 10..358 98 -> Plus
X 6590051..6590248 359..556 100 -> Plus
X 6590314..6590557 557..802 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:30 Download gff for BO14419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483518..6483865 10..358 98 -> Plus
arm_X 6484084..6484281 359..556 100 -> Plus
arm_X 6484347..6484590 557..802 98   Plus

BO14419.complete Sequence

814 bp assembled on 2006-10-11

GenBank Submission: FJ633117

> BO14419.complete
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCGATGATGCAA
GCTTTCTAGACCAT

BO14419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 783 CG17717-PB 1..780 17..796 3855 99.6 Plus
CG17717-RA 801 CG17717-PA 1..798 17..796 3640 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1074 CG17717-RB 202..981 17..796 3855 99.6 Plus
CG17717-RA 1092 CG17717-RA 202..999 17..796 3640 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589491..6589832 17..358 1680 99.4 Plus
X 23542271 X 6590311..6590553 554..796 1200 99.6 Plus
X 23542271 X 6590050..6590251 358..559 1010 100 Plus
Blast to na_te.dros performed 2014-11-27 01:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 491..413 108 62.7 Minus

BO14419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:55 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:08 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..985 10..802 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:15 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 202..981 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:55 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..985 10..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:41 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 202..981 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:41 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589491..6589832 17..358 99 -> Plus
X 6590051..6590248 359..556 100 -> Plus
X 6590314..6590553 557..798 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:15 Download gff for BO14419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483524..6483865 17..358 99 -> Plus
arm_X 6484084..6484281 359..556 100 -> Plus
arm_X 6484347..6484586 557..798 98   Plus

BO14419.pep Sequence

Translation from 16 to 814

> BO14419.pep
MSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAEAICSSQIVA
SAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSCRICRWNRND
MEIIKCPCNCKGSVCLKRWIMHRRDNRCEICNAVFNIAEERASLKQMIRT
FCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCMDNMNQGSTDQLTVQE
VFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHWWMFGSTSDFELVEI
EDDSIDFFDDASFLDH

BO14419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 260 CG17717-PB 1..260 1..260 1370 100 Plus
CG17717-PA 266 CG17717-PA 1..266 1..260 1353 97.7 Plus