Clone Sequence Records
BO14419.3prime Sequence
812 bp (791 high quality bases) assembled on 2006-05-29
> BO14419.3prime
ATGGTCTAGAAAGCTTGCATCATCGAAAAAATCGATGGAATCATCCTCAA
TCTCCACCAGCTCAAAATCGGAGGTGCTGCCAAACATCCACCAGTGGCTG
AGAATGTTCCGGATGAGCATAAATCGTGTGGTGACAAACTCAAAGAAGTG
GAAGAAAAGTGCACTGGAGGTCAGAAGGGCACAAGAGGCGACAAACACCT
CCTGGACGGTTAACTGATCGGTGCTGCCCTGATTCATATTATCCATGCAC
TGCAGCACCTGCTGCAAGATGATATGGGCTAGTGGCATTAGCGAGGCGCT
AAATAGCAGATGCTTCACAATCAGGCCGCAACAACGGCCGCAGCAGAAGG
TTCGGATCATTTGCTTCAGACTGGCCCGCTCCTCCGCGATATTAAAGACC
GCATTGCAGATCTCACAGCGATTATCCCGCCTGTGCATGATCCAGCGCTT
CAAGCACACGCTGCCCTTGCAGTTGCAGGGACATTTGATGATCTCCATGT
CGTTGCGGTTCCAGCGGCAGATGCGGCACGAGTTGCCGCTTTCGTTCGCC
GAATGGAGGCTCTCCTGTAGGTGACTTCGCAGCATCCGTTGTCGTGCTGA
GGATATTTCCAGTGCTGCCGTGGATGCAGTGGGCGTGCCATGTGCCGATG
CTACGATTTGCGACGAGCAGATTGCTTCAGCTGCCGCTGACTGAGGCGGC
TGAGCGCCGAGTGGCATTGTGGCATTGCCGGCTGACTCCAGACCGTTAAT
CAGACGAAGGGCAGCGGCCTCGGAAAGAACGTGTTGATGATGCCCCATGT
CGACTGATAACT
BO14419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-PB | 783 | CG17717-RB | 6..780 | 793..19 | 3800 | 99.6 | Minus |
CG17717-PA | 801 | CG17717-RA | 360..798 | 457..19 | 2170 | 99.7 | Minus |
CG17717-PA | 801 | CG17717-RA | 6..342 | 793..457 | 1635 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 1074 | CG17717-RB | 207..981 | 793..19 | 3830 | 99.6 | Minus |
CG17717-RA | 1092 | CG17717-RA | 207..999 | 793..19 | 3640 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6589496..6589832 | 793..457 | 1655 | 99.4 | Minus |
X | 23542271 | X | 6590311..6590553 | 261..19 | 1200 | 99.6 | Minus |
X | 23542271 | X | 6590050..6590251 | 457..256 | 1010 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 19:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 423..505 | 324..402 | 108 | 62.7 | Plus |
BO14419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:21 Download gff for
BO14419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-PB | 1..783 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:56 Download gff for
BO14419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-PB | 1..783 | 18..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:53:03 Download gff for
BO14419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..985 | 13..805 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:45 Download gff for
BO14419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..985 | 13..805 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:45 Download gff for
BO14419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6589485..6589832 | 457..805 | 97 | -> | Minus |
X | 6590051..6590248 | 259..456 | 100 | -> | Minus |
X | 6590314..6590557 | 13..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:53:03 Download gff for
BO14419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6484084..6484281 | 259..456 | 100 | -> | Minus |
arm_X | 6484347..6484590 | 13..258 | 98 | | Minus |
arm_X | 6483518..6483865 | 457..805 | 97 | -> | Minus |
BO14419.5prime Sequence
812 bp (811 high quality bases) assembled on 2006-05-29
> BO14419.5prime
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCGATGATGCAA
GCTTTCTAGACC
BO14419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-PB | 783 | CG17717-RB | 1..780 | 17..796 | 3825 | 99.6 | Plus |
CG17717-PA | 801 | CG17717-RA | 360..798 | 358..796 | 2170 | 99.7 | Plus |
CG17717-PA | 801 | CG17717-RA | 1..342 | 17..358 | 1660 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 1074 | CG17717-RB | 202..981 | 17..796 | 3855 | 99.6 | Plus |
CG17717-RA | 1092 | CG17717-RA | 202..999 | 17..796 | 3665 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6589491..6589832 | 17..358 | 1680 | 99.4 | Plus |
X | 23542271 | X | 6590311..6590553 | 554..796 | 1200 | 99.6 | Plus |
X | 23542271 | X | 6590050..6590251 | 358..559 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 13:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 423..505 | 491..413 | 108 | 62.7 | Minus |
BO14419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:21 Download gff for
BO14419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-PB | 1..783 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:22:57 Download gff for
BO14419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-PB | 1..783 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:30 Download gff for
BO14419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..985 | 10..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:58 Download gff for
BO14419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..985 | 10..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:58 Download gff for
BO14419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6589485..6589832 | 10..358 | 98 | -> | Plus |
X | 6590051..6590248 | 359..556 | 100 | -> | Plus |
X | 6590314..6590557 | 557..802 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:30 Download gff for
BO14419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6483518..6483865 | 10..358 | 98 | -> | Plus |
arm_X | 6484084..6484281 | 359..556 | 100 | -> | Plus |
arm_X | 6484347..6484590 | 557..802 | 98 | | Plus |
BO14419.complete Sequence
814 bp assembled on 2006-10-11
GenBank Submission: FJ633117
> BO14419.complete
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCGATGATGCAA
GCTTTCTAGACCAT
BO14419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 783 | CG17717-PB | 1..780 | 17..796 | 3855 | 99.6 | Plus |
CG17717-RA | 801 | CG17717-PA | 1..798 | 17..796 | 3640 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 1074 | CG17717-RB | 202..981 | 17..796 | 3855 | 99.6 | Plus |
CG17717-RA | 1092 | CG17717-RA | 202..999 | 17..796 | 3640 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6589491..6589832 | 17..358 | 1680 | 99.4 | Plus |
X | 23542271 | X | 6590311..6590553 | 554..796 | 1200 | 99.6 | Plus |
X | 23542271 | X | 6590050..6590251 | 358..559 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 423..505 | 491..413 | 108 | 62.7 | Minus |
BO14419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:55 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 1..783 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:08 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..985 | 10..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:15 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 202..981 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:55 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..985 | 10..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:41 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 202..981 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:41 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6589491..6589832 | 17..358 | 99 | -> | Plus |
X | 6590051..6590248 | 359..556 | 100 | -> | Plus |
X | 6590314..6590553 | 557..798 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:15 Download gff for
BO14419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6483524..6483865 | 17..358 | 99 | -> | Plus |
arm_X | 6484084..6484281 | 359..556 | 100 | -> | Plus |
arm_X | 6484347..6484586 | 557..798 | 98 | | Plus |
BO14419.pep Sequence
Translation from 16 to 814
> BO14419.pep
MSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAEAICSSQIVA
SAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSCRICRWNRND
MEIIKCPCNCKGSVCLKRWIMHRRDNRCEICNAVFNIAEERASLKQMIRT
FCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCMDNMNQGSTDQLTVQE
VFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHWWMFGSTSDFELVEI
EDDSIDFFDDASFLDH
BO14419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-PB | 260 | CG17717-PB | 1..260 | 1..260 | 1370 | 100 | Plus |
CG17717-PA | 266 | CG17717-PA | 1..266 | 1..260 | 1353 | 97.7 | Plus |