Clone Sequence Records
BO14421.3prime Sequence
885 bp (799 high quality bases) assembled on 2006-05-29
> BO14421.3prime
ATGGTCTAGAAAGCTTGCCTTTTGTATTCCATTGATCGACGCCGCATTGG
CAGAAGCTGGCGACATGCAGTTACCATCTGGATAACGCTTCTGGAACTGC
GTAATTAGCTCCGGATCCACCAGTCGAATGCCATCCAGTTGGTTTCCCAG
GGTTATCCAGTTCGGTTGGATGTTGTGCGGACGCCCAAAGAGCTCGATCT
TGCGAGTACCCGGGCTTAGACGCTCGATAATACCATAAATCTCATCCGGC
TTGTGAGAGGTGGCCCGCACCTCCGCAACGATCACATCGCAATCGAGTCC
GCGGTTCAGGTTTGTGGGATTGCCTTTCATGCCCACCAAACAGTGCTCCT
TGCCGTGGTTTAGCCAATGACCAGTGCGCCCAGTGCGAATAATTCGCTGC
AGTTGGTTGGTCTTTACCCAGATGAGTTCGTCCACGCGCTCATAGCCCCA
CAACTTGAGGCAGTCGCGGCCAAGTTCCATGGCTCGTCCAGTGACCCACA
GAAAGATCAAGCCGTCATCCTGAAGTGCCGGCACGCCCAGTGCTCTCATT
TCATCGTCCGACATTGTGCCGTAGGGCAATTCCATGTGGATATCCCAGGG
AGGATCGGCCATCACCACAGCGAACTTTCCCAGGACCGTCATGTCCAAGA
AGCGTAGGTCGCATTGAATCCATTGCGGCGGATAGAGCGTGCAACTGGAG
TCTACGCTGCGCTTGAGGCTCAATTTGGTTTTCACATCCGTGGGCTTGTT
TGTGTTTATATGCGGCAGGGTGTCCACCTCATAGTGCACGTACTTGCAGG
TGGCCATGTGGAAGCAGGTGTTTAGGAAACTGCAGTCCCCCAGAGATTCG
TCCGTGTGAGCCTGGATGATCTTTTTGAAATGCAG
BO14421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5933-PA | 1827 | CG5933-RA | 958..1824 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 998..1864 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24033284..24034150 | 885..19 | 4335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:18:48 has no hits.
BO14421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:25 Download gff for
BO14421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-PA | 958..1827 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:01 Download gff for
BO14421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-PA | 958..1827 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:41:08 Download gff for
BO14421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 998..1871 | 11..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:43 Download gff for
BO14421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 998..1871 | 11..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:43 Download gff for
BO14421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24033284..24034157 | 11..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:41:08 Download gff for
BO14421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19859006..19859879 | 11..885 | 99 | | Minus |
BO14421.5prime Sequence
911 bp (780 high quality bases) assembled on 2006-05-29
> BO14421.5prime
GAAGTTATCAGTCGACATGGCAGATGCGTGGGACATAAAATCACTCAAGA
CAAAGCGGAACACGCTCCGCGAGAAGCTGGAAAAGCGCAAGAAGGAGCGC
ATTGAGATTCTCTCGGACATTCAGGAGGATCTGACGAATCCCAAAAAGGA
ACTCGTTGAGGCTGACTTGGAAGTACAGAAGGAGGTGCTGCAGGCCCTCA
GTTCCTGCTCCCTGGCCCTGCCCATTGTCTCCACACAGGTGGTGGAAAAG
ATTGCCGGCAGCAGCCTGGAGATGGTGAACTTTATTCTAGGCAAACTGGC
CAACCAGGGTGCAATTGTGATCCGGAACGTGACCATCGGCACCGAGGCCG
GCTGCGAAATCATCTCTGTGCAGCCCAAGGAGCTGAAGGAGATCCTGGAA
GACACCAACGATACGTGTCAGCAAAAGGAGGAGGAGGCCAAGAGAAAGTT
GGAAGTCGACGATGTTGATCAGCCACAGGAGAAGACAATAAAACTGGAGT
CCACTGTAGCGCGGAAAGAGTCCACAAGCCTGGATGCTCCGGACGACATT
ATGATGCTGCTATCCATGCCTTCCACCCGCGAAAAACAGAGTAAGCAGGT
GGGCGAGGAGATTCTTGAGCTGCTTACTAAGCCTACGGCCAAAGAGCGAT
CCGTGGCTGAGAAGTTTAAGTCCCACGGCGGAGCGCAGGTCATGGAGTTT
TGCTCCCACGGCACAAAAGTCGAGTGCCTGAAGGCTCAACAAGCCACCGC
CGAGATGGCGGCCAAAAAGAAACAAGAAAGAAGAGACGAAAAGGAGCTTC
GCCCGGATGTTGATGCGGGCGAAAACGTCACCGGTAAGGTACCCAAGACA
GAATCGGCAGCCGAGGATGGAGAATCATTGCGGAGGTTATAAACAATTGC
GAAGCCGAGTC
BO14421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5933-PA | 1827 | CG5933-RA | 1..858 | 17..874 | 4265 | 99.8 | Plus |
| CG5933-PA | 1827 | CG5933-RA | 858..896 | 873..911 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 41..936 | 17..911 | 4440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24032760..24033222 | 450..911 | 2250 | 99.6 | Plus |
| 3R | 32079331 | 3R | 24032397..24032691 | 155..449 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 24032197..24032340 | 17..160 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:38:19 has no hits.
BO14421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:26 Download gff for
BO14421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-PA | 1..896 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:03 Download gff for
BO14421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-PA | 1..896 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:43 Download gff for
BO14421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..936 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:33 Download gff for
BO14421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..936 | 17..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:33 Download gff for
BO14421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24032197..24032335 | 17..155 | 100 | -> | Plus |
| 3R | 24032398..24032691 | 156..449 | 100 | -> | Plus |
| 3R | 24032760..24033222 | 450..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:43 Download gff for
BO14421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19857919..19858057 | 17..155 | 100 | -> | Plus |
| arm_3R | 19858120..19858413 | 156..449 | 100 | -> | Plus |
| arm_3R | 19858482..19858944 | 450..911 | 99 | | Plus |
BO14421.complete Sequence
1858 bp assembled on 2008-08-14
GenBank Submission: KX797107
> BO14421.complete
GAAGTTATCAGTCGACATGGCAGATGCGTGGGACATAAAATCACTCAAGA
CAAAGCGGAACACGCTCCGCGAGAAGCTGGAAAAGCGCAAGAAGGAGCGC
ATTGAGATTCTCTCGGACATTCAGGAGGATCTGACGAATCCCAAAAAGGA
ACTCGTTGAGGCTGACTTGGAAGTACAGAAGGAGGTGCTGCAGGCCCTCA
GTTCCTGCTCCCTGGCCCTGCCCATTGTCTCCACACAGGTGGTGGAAAAG
ATTGCCGGCAGCAGCCTGGAGATGGTGAACTTTATTCTAGGCAAACTGGC
CAACCAGGGTGCAATTGTGATCCGGAACGTGACCATCGGCACCGAGGCCG
GCTGCGAAATCATCTCTGTGCAGCCCAAGGAGCTGAAGGAGATCCTGGAA
GACACCAACGATACGTGTCAGCAAAAGGAGGAGGAGGCCAAGAGAAAGTT
GGAAGTCGACGATGTTGATCAGCCACAGGAGAAGACAATAAAACTGGAGT
CCACTGTAGCGCGGAAAGAGTCCACAAGCCTGGATGCTCCGGACGACATT
ATGATGCTGCTATCCATGCCTTCCACCCGCGAAAAACAGAGTAAGCAGGT
GGGCGAGGAGATTCTTGAGCTGCTTACTAAGCCTACGGCCAAAGAGCGAT
CCGTGGCTGAGAAGTTTAAGTCCCACGGCGGAGCGCAGGTCATGGAGTTT
TGCTCCCACGGCACAAAAGTCGAGTGCCTGAAGGCTCAACAAGCCACCGC
CGAGATGGCGGCCAAAAAGAAACAAGAAAGAAGAGACGAAAAGGAGCTTC
GCCCGGATGTTGATGCGGGCGAAAACGTCACCGGTAAGGTACCCAAGACA
GAATCGGCAGCCGAGGATGGAGAAATCATTGCGGAGGTTATAAACAATTG
CGAAGCCGAGTCGCAGGAATCCACCGATGGCAGCGATACCTGCAGCAGTG
AGACAACAGACAAGTGCACCAAACTGCATTTCAAAAAGATCATCCAGGCT
CACACGGACGAATCTCTGGGGGACTGCAGTTTCCTAAACACCTGCTTCCA
CATGGCCACCTGCAAGTACGTGCACTATGAGGTGGACACCCTGCCGCATA
TAAACACAAACAAGCCCACGGATGTGAAAACCAAATTGAGCCTCAAGCGC
AGCGTAGACTCCAGTTGCACGCTCTATCCGCCGCAATGGATTCAATGCGA
CCTACGCTTCTTGGACATGACGGTCCTGGGAAAGTTCGCTGTGGTGATGG
CCGATCCTCCCTGGGATATCCACATGGAATTGCCCTACGGCACAATGTCG
GACGATGAAATGAGAGCACTGGGCGTGCCGGCACTTCAGGATGACGGCTT
GATCTTTCTGTGGGTCACTGGACGAGCCATGGAACTTGGCCGCGACTGCC
TCAAGTTGTGGGGCTATGAGCGCGTGGACGAACTCATCTGGGTAAAGACC
AACCAACTGCAGCGAATTATTCGCACTGGGCGCACTGGTCATTGGCTAAA
CCACGGCAAGGAGCACTGTTTGGTGGGCATGAAAGGCAATCCCACAAACC
TGAACCGCGGACTCGATTGCGATGTGATCGTTGCGGAGGTGCGGGCCACC
TCTCACAAGCCGGATGAGATTTATGGTATTATCGAGCGTCTAAGCCCGGG
TACTCGCAAGATCGAGCTCTTTGGGCGTCCGCACAACATCCAACCGAACT
GGATAACCCTGGGAAACCAACTGGATGGCATTCGACTGGTGGATCCGGAG
CTAATTACGCAGTTCCAGAAGCGTTATCCAGATGGTAACTGCATGTCGCC
AGCTTCTGCCAATGCGGCGTCGATCAATGGAATACAAAAGGCAAGCTTTC
TAGACCAT
BO14421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1827 | CG5933-PA | 1..1824 | 17..1840 | 9105 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 41..1864 | 17..1840 | 9105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24032760..24034150 | 450..1840 | 6940 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24032397..24032691 | 155..449 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 24032197..24032340 | 17..160 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:26:11 has no hits.
BO14421.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:41 Download gff for
BO14421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-RA | 2..1832 | 15..1841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:43 Download gff for
BO14421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..1864 | 17..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:22 Download gff for
BO14421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-RA | 6..1829 | 17..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:37 Download gff for
BO14421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..1864 | 17..1842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:37 Download gff for
BO14421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24032197..24032335 | 17..155 | 100 | -> | Plus |
| 3R | 24032398..24032691 | 156..449 | 100 | -> | Plus |
| 3R | 24032760..24034150 | 450..1842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:43 Download gff for
BO14421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19857919..19858057 | 17..155 | 100 | -> | Plus |
| arm_3R | 19858120..19858413 | 156..449 | 100 | -> | Plus |
| arm_3R | 19858482..19859872 | 450..1842 | 99 | | Plus |
BO14421.pep Sequence
Translation from 16 to 1858
> BO14421.pep
MADAWDIKSLKTKRNTLREKLEKRKKERIEILSDIQEDLTNPKKELVEAD
LEVQKEVLQALSSCSLALPIVSTQVVEKIAGSSLEMVNFILGKLANQGAI
VIRNVTIGTEAGCEIISVQPKELKEILEDTNDTCQQKEEEAKRKLEVDDV
DQPQEKTIKLESTVARKESTSLDAPDDIMMLLSMPSTREKQSKQVGEEIL
ELLTKPTAKERSVAEKFKSHGGAQVMEFCSHGTKVECLKAQQATAEMAAK
KKQERRDEKELRPDVDAGENVTGKVPKTESAAEDGEIIAEVINNCEAESQ
ESTDGSDTCSSETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATCK
YVHYEVDTLPHINTNKPTDVKTKLSLKRSVDSSCTLYPPQWIQCDLRFLD
MTVLGKFAVVMADPPWDIHMELPYGTMSDDEMRALGVPALQDDGLIFLWV
TGRAMELGRDCLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGKEH
CLVGMKGNPTNLNRGLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIE
LFGRPHNIQPNWITLGNQLDGIRLVDPELITQFQKRYPDGNCMSPASANA
ASINGIQKASFLDH
BO14421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-PA | 608 | CG5933-PA | 1..608 | 1..608 | 3162 | 100 | Plus |
| CG7818-PA | 397 | CG7818-PA | 135..365 | 385..594 | 253 | 29.3 | Plus |
