Clone Sequence Records
BO14422.3prime Sequence
774 bp (738 high quality bases) assembled on 2006-05-29
> BO14422.3prime
ATGGTCTAGAAAGCTTGCTCGTTTTGCTAGCAAAGCTTTAATGCTTTTCT
CGATAAAAGGCTTCACGTACATAACATCCGTGTAGACGCCAGGATAACGG
TTGCTAGCACATCCAATGCCAAAGGACACTATGCCACACACCTGCTTTTT
GAACACCAACGGCCCACCTGAGTCAAAGGTGCACGCATCCTTACGTCCCA
GCACTGCAGCACATATCATACTGTCGGTTATTTTAGCCGTGGGCTGATAG
GCAGCGCGACAGTTCTTTTTGTGAATAATTGGCACTGTCACCGTACGTAG
TAAGTTGTGGGGCCCACGTCCTCGGGGAGCGGTCATGCCCCATCCGGAAA
CCACCAGTTCTACGCCTGGCTTAAGGCTCACCGAACATAAGCTCAGTGTT
CCGATGTTTTTAGCCTTCAATGGAGTTTTCAGCAGTACCACTGCTACATC
CATATTCATGTCGTCCTCTCGAAATTGCTCGGACAGGATGAAGTCCTTAA
CATGGCGTCGAATACCCTTTTGATTGAGATTCGAAATGCCGGCAGCCACA
ATCCATTCGCTCGCCTTCATTCGACCCAGAAAACAGTGAGCCGCCGTCAG
GACGATGTTTTCGTTGAGCAATGTACCGCCACAAACAAAATCGTCTTCAT
AAAGCAAGGCTGTTAGGTATCCTCCCAACTTGGCATTTGTGGTCACATGG
CCGCCAATTACGCCAGTTTCATGTGGTGATGGAAGAACTATCTTGGCCAG
CTGTGCCACATCGAGAGTGAGATT
BO14422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-PA | 879 | CG11037-RA | 121..876 | 774..19 | 3755 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 913 | CG11037-RA | 123..878 | 774..19 | 3765 | 99.9 | Minus |
CG10588-RB | 3727 | CG10588-RB | 3500..3718 | 19..237 | 1095 | 100 | Plus |
CG10587-RA | 866 | CG10587-RA | 560..838 | 297..19 | 495 | 78.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20960723..20961264 | 233..774 | 2680 | 99.6 | Plus |
3L | 28110227 | 3L | 20960433..20960651 | 19..237 | 1095 | 100 | Plus |
3L | 28110227 | 3L | 20961565..20961776 | 19..230 | 415 | 79.7 | Plus |
3L | 28110227 | 3L | 20955805..20955968 | 29..192 | 340 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:14:29 has no hits.
BO14422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:27 Download gff for
BO14422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-PA | 121..879 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:04 Download gff for
BO14422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-PA | 121..879 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:21:35 Download gff for
BO14422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 123..881 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:37:09 Download gff for
BO14422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 123..881 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:37:09 Download gff for
BO14422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20960429..20960650 | 15..236 | 99 | <- | Plus |
3L | 20960727..20961264 | 237..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:21:35 Download gff for
BO14422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20953529..20953750 | 15..236 | 99 | <- | Plus |
arm_3L | 20953827..20954364 | 237..774 | 99 | | Plus |
BO14422.5prime Sequence
888 bp (755 high quality bases) assembled on 2006-05-29
> BO14422.5prime
GAAGTTATCAGTCGACATGGAATGGCATCTCGTTTGCTGCGTGCTGGCTT
GCACTTTAGTTTCGACCCAAGTATATGGCCAAGAACAGGAGAAAATTGTG
CTTTCCCTGCCGGATGAAAGTGGTCAACCGGGCAAAAATCTCACTCTCGA
TGTGGCACAGCTGGCCAAGATAGTTCTTCCATCACCACATGAAACTCGCG
TAATTGGCGGCCATGTGACCACAAATGCCAAGTTGGGAGGATACCTAACA
GCCTTGCTTTATGAAGACGATTTTGTTTGTGGCGGTACATTGCTCAACGA
AAACATCGTCCTGACGGCGGCTCACTGTTTTCTGGGTCGAATGAAGGCGA
GCGAATGGATTGTGGCTGCCGGCATTTCGAATCTCAATCAAAAGGGTATT
CGACGCCATGTTAAGGACTTCATCCTGTCCGAGCAATTTCGAGAGGACGA
CATGAATATGGATGTAGCAGTGGTACTGCTGAAAACTCCATTGAAGGCTA
AAAACATCGGAACACTGAGCTTATGTTCGGTGAGCCTTAAGCCAGGCGTA
GAACTGGTGGTTTCCGGATGGGGCATGACCGCTCCCCGAGGACGTGGGCC
CCACAACTTACTACGTACGGTGACAGTGCCAATTATTCACAAAAAGAACT
GTCGCGCTGCCTATCAGCCCACGGCTAAAATAACCGACAGTATGATATGT
GCTGCAGTGCTGGGACGTAAGGATGCGTGCACCTTTGACTCAGGTGGGCC
GTTGGTGTTCAAAAAGCAGGTGTGTGGCATAGTGTCCTTTGGCATTGGAT
GTGCTAGCAACCGTTATCCTGGCGTCTACACGGATGTTATGTACGTGAAG
CCTTTTATCGAGAAAAGCATTTAAGCTTTGCTAACAAA
BO14422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-PA | 879 | CG11037-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 913 | CG11037-RA | 3..874 | 17..888 | 4330 | 99.8 | Plus |
CG10588-RB | 3727 | CG10588-RB | 3504..3718 | 888..674 | 1045 | 99.1 | Minus |
CG10587-RA | 866 | CG10587-RA | 560..817 | 614..871 | 450 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20960723..20961384 | 678..17 | 3295 | 99.8 | Minus |
3L | 28110227 | 3L | 20960437..20960651 | 888..674 | 1045 | 99.1 | Minus |
3L | 28110227 | 3L | 20961586..20961776 | 871..681 | 370 | 79.6 | Minus |
3L | 28110227 | 3L | 20955805..20955968 | 882..719 | 325 | 79.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:25:39 has no hits.
BO14422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:28 Download gff for
BO14422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:05 Download gff for
BO14422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:33 Download gff for
BO14422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..871 | 16..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:32 Download gff for
BO14422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..871 | 16..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:32 Download gff for
BO14422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20960440..20960650 | 675..885 | 99 | <- | Minus |
3L | 20960727..20961384 | 17..674 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:33 Download gff for
BO14422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20953540..20953750 | 675..885 | 99 | <- | Minus |
arm_3L | 20953827..20954484 | 17..674 | 100 | | Minus |
BO14422.complete Sequence
910 bp assembled on 2006-10-11
GenBank Submission: FJ633118
> BO14422.complete
GAAGTTATCAGTCGACATGGAATGGCATCTCGTTTGCTGCGTGCTGGCTT
GCACTTTAGTTTCGACCCAAGTATATGGCCAAGAACAGGAGAAAATTGTG
CTTTCCCTGCCGGATGAAAGTGGTCAACCGGGCAAAAATCTCACTCTCGA
TGTGGCACAGCTGGCCAAGATAGTTCTTCCATCACCACATGAAACTCGCG
TAATTGGCGGCCATGTGACCACAAATGCCAAGTTGGGAGGATACCTAACA
GCCTTGCTTTATGAAGACGATTTTGTTTGTGGCGGTACATTGCTCAACGA
AAACATCGTCCTGACGGCGGCTCACTGTTTTCTGGGTCGAATGAAGGCGA
GCGAATGGATTGTGGCTGCCGGCATTTCGAATCTCAATCAAAAGGGTATT
CGACGCCATGTTAAGGACTTCATCCTGTCCGAGCAATTTCGAGAGGACGA
CATGAATATGGATGTAGCAGTGGTACTGCTGAAAACTCCATTGAAGGCTA
AAAACATCGGAACACTGAGCTTATGTTCGGTGAGCCTTAAGCCAGGCGTA
GAACTGGTGGTTTCCGGATGGGGCATGACCGCTCCCCGAGGACGTGGGCC
CCACAACTTACTACGTACGGTGACAGTGCCAATTATTCACAAAAAGAACT
GTCGCGCTGCCTATCAGCCCACGGCTAAAATAACCGACAGTATGATATGT
GCTGCAGTGCTGGGACGTAAGGATGCGTGCACCTTTGACTCAGGTGGGCC
GTTGGTGTTCAAAAAGCAGGTGTGTGGCATAGTGTCCTTTGGCATTGGAT
GTGCTAGCAACCGTTATCCTGGCGTCTACACGGATGTTATGTACGTGAAG
CCTTTTATCGAGAAAAGCATTAAAGCTTTGCTAGCAAAACGAGCAAGCTT
TCTAGACCAT
BO14422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 879 | CG11037-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
CG10587-RA | 831 | CG10587-PA | 550..828 | 614..892 | 495 | 78.5 | Plus |
CG10587-RC | 870 | CG10587-PC | 656..867 | 681..892 | 415 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-RA | 913 | CG11037-RA | 3..878 | 17..892 | 4380 | 100 | Plus |
CG10588-RB | 3727 | CG10588-RB | 3500..3718 | 892..674 | 1095 | 100 | Minus |
CG10587-RA | 866 | CG10587-RA | 560..838 | 614..892 | 495 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20960723..20961384 | 678..17 | 3295 | 99.8 | Minus |
3L | 28110227 | 3L | 20960433..20960651 | 892..674 | 1095 | 100 | Minus |
3L | 28110227 | 3L | 20961565..20961776 | 892..681 | 415 | 79.7 | Minus |
3L | 28110227 | 3L | 20955805..20955968 | 882..719 | 340 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:18:51 has no hits.
BO14422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:57 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..879 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:09 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..881 | 16..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:43 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 3..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:58 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 1..881 | 16..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:06 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11037-RA | 3..878 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:06 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20960431..20960650 | 675..894 | 99 | <- | Minus |
3L | 20960727..20961384 | 17..674 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:43 Download gff for
BO14422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20953531..20953750 | 675..894 | 99 | <- | Minus |
arm_3L | 20953827..20954484 | 17..674 | 100 | | Minus |
BO14422.pep Sequence
Translation from 16 to 910
> BO14422.pep
MEWHLVCCVLACTLVSTQVYGQEQEKIVLSLPDESGQPGKNLTLDVAQLA
KIVLPSPHETRVIGGHVTTNAKLGGYLTALLYEDDFVCGGTLLNENIVLT
AAHCFLGRMKASEWIVAAGISNLNQKGIRRHVKDFILSEQFREDDMNMDV
AVVLLKTPLKAKNIGTLSLCSVSLKPGVELVVSGWGMTAPRGRGPHNLLR
TVTVPIIHKKNCRAAYQPTAKITDSMICAAVLGRKDACTFDSGGPLVFKK
QVCGIVSFGIGCASNRYPGVYTDVMYVKPFIEKSIKALLAKRASFLDH
BO14422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11037-PA | 292 | CG11037-PA | 1..292 | 1..292 | 1523 | 100 | Plus |
CG10587-PA | 276 | CG10587-PA | 1..276 | 1..292 | 908 | 61.3 | Plus |
CG10587-PC | 289 | CG10587-PC | 1..289 | 1..292 | 884 | 58.7 | Plus |
Sems-PA | 275 | CG10586-PA | 23..273 | 41..291 | 871 | 66.5 | Plus |
CG10587-PD | 225 | CG10587-PD | 1..205 | 1..221 | 585 | 53.8 | Plus |