Clone BO14427 Report

Search the DGRC for BO14427

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7059-RA
Protein status:BO14427.pep: Imported from assembly
Sequenced Size:835

Clone Sequence Records

BO14427.3prime Sequence

800 bp (791 high quality bases) assembled on 2006-05-29

> BO14427.3prime
CGTTTACGGGGCGCCAAACGAATGGTCTAGAAAGCTTGCGTCCCCAATGG
GTGCCACCTGGGCTGTCTTCCGCCTAATATACTCCTGATCCCCCAGATTG
ATGGCAGCTCCAACCAAGCCTCCCGTTTTCAAATCGAACTCATAGACGCG
TGGCACGCAATTTGGAATGTTAACCTTTTCGATGGCCTCGTTGGAGATTC
CCTCAATGTGCTGGACGAGAGCACGGGCCACAGTTCCGTGGACGCACATT
AGTACCCGGGTGCCTTGGAACACTTCCCGCCTGACCTCCTTCCACACGGG
TTTCACTCGATCGACGCACATGTGAAGGGATTCCGCGAGGGGGAACTCAC
CGCGAGGAACATCATCGAATATGGGATTGCTGCAAATGGTGTAGAAGTAG
CGGTTCTTCTCATCGATGGGCGGCGGTACGCAGTCGTATCCACGTCGCCA
GGCCTGAACCTGCTCCTCCCCATAGCGATCGGCTACCACTCGTTTCCGGC
AACCAGTCAGATTTCCGTAGTGCCTTTCGCACAGCCGCCAATCCTCCTTA
ATGGGCACATAGGCGCAGTTCAACTTGGAGAGTATCAATTCGGCCGTTTG
ACGAGATCTGCTCAATACGGATGAATAGACCACGTCGAATTCCAACTCGG
ATTGGACGAGCGCGGGAATCGCCACAGTCAGCGCCTCTTGGACGCCGAAT
TCCCTCAATGGCGCATCATGCCAACCGCAGAATTTGTTCTCAATGTTGAA
ATCACTTTCGCCATGCCTCAAAATCACCAAGCGATTTGTTTTCGTCATAA

BO14427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-PA 804 CG7059-RA 41..797 800..44 3685 99.4 Minus
CG7059-PD 789 CG7059-RD 26..782 800..44 3685 99.4 Minus
CG7059-PC 762 CG7059-RC 1..755 798..44 3675 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RD 1261 CG7059-RD 232..992 800..40 3730 99.3 Minus
CG7059-RC 1238 CG7059-RC 209..969 800..40 3730 99.3 Minus
CG7059-RA 1332 CG7059-RA 303..1063 800..40 3730 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22391368..22391864 696..200 2455 99.6 Minus
3R 32079331 3R 22391919..22392080 201..40 780 98.8 Minus
3R 32079331 3R 22391202..22391307 800..695 515 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:51:21 has no hits.

BO14427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:36 Download gff for BO14427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-PC 1..762 37..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:18 Download gff for BO14427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-PD 28..789 37..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:55 Download gff for BO14427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 303..1063 40..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:40 Download gff for BO14427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 303..1063 40..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:40 Download gff for BO14427.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22391202..22391306 696..800 99 -> Minus
3R 22391369..22391863 201..695 99 -> Minus
3R 22391920..22392080 40..200 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:55 Download gff for BO14427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18216924..18217028 696..800 99 -> Minus
arm_3R 18217091..18217585 201..695 99 -> Minus
arm_3R 18217642..18217802 40..200 98   Minus

BO14427.5prime Sequence

768 bp (721 high quality bases) assembled on 2006-05-29

> BO14427.5prime
GAAGTTATCACCCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACA
TTGAGGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGC
GTGCCACGCGTCTATGAGTTCGATTTTGAAACGGGAGGCTTGGTTGGAGC
TGCCATCAATCTGGGGGA

BO14427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-PA 804 CG7059-RA 1..752 17..768 3660 99.4 Plus
CG7059-PD 789 CG7059-RD 18..737 49..768 3500 99.4 Plus
CG7059-PC 762 CG7059-RC 1..710 59..768 3450 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RA 1332 CG7059-RA 262..1014 16..768 3705 99.5 Plus
CG7059-RD 1261 CG7059-RD 224..943 49..768 3540 99.4 Plus
CG7059-RC 1238 CG7059-RC 201..920 49..768 3540 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22391368..22391864 161..657 2455 99.6 Plus
3R 32079331 3R 22391194..22391307 49..162 570 100 Plus
3R 32079331 3R 22391919..22392031 656..768 535 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 09:41:26 has no hits.

BO14427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:37 Download gff for BO14427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-PA 1..751 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:19 Download gff for BO14427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-PA 1..751 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:27 Download gff for BO14427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 262..1013 16..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:44 Download gff for BO14427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 262..1013 16..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:44 Download gff for BO14427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22390041..22390073 16..48 100 -> Plus
3R 22391194..22391306 49..161 100 -> Plus
3R 22391369..22391863 162..656 99 -> Plus
3R 22391920..22392030 657..767 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:27 Download gff for BO14427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18215763..18215795 16..48 100 -> Plus
arm_3R 18216916..18217028 49..161 100 -> Plus
arm_3R 18217091..18217585 162..656 99 -> Plus
arm_3R 18217642..18217752 657..767 98   Plus

BO14427.complete Sequence

835 bp assembled on 2009-07-28

GenBank Submission: KX795619

> BO14427.complete
GAAGTTATCACCCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACA
TTGAGGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGC
GTGCCACGCGTCTATGAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGC
TGCCATCAATCTGGGGGATCAGGAGTATATTAGGCGGAAGACAGCCCAGG
TGGCAGCCATTGGTGACGCAAGCTTTCTAGACCAT

BO14427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RA 804 CG7059-PA 1..801 17..817 3975 99.8 Plus
CG7059-RD 789 CG7059-PD 18..786 49..817 3815 99.7 Plus
CG7059-RC 762 CG7059-PC 1..759 59..817 3765 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RA 1332 CG7059-RA 262..1063 16..817 3980 99.8 Plus
CG7059-RD 1261 CG7059-RD 224..992 49..817 3815 99.7 Plus
CG7059-RC 1238 CG7059-RC 201..969 49..817 3815 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22391368..22391864 161..657 2455 99.6 Plus
3R 32079331 3R 22391919..22392080 656..817 810 100 Plus
3R 32079331 3R 22391194..22391307 49..162 570 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:03:32 has no hits.

BO14427.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-29 17:37:37 Download gff for BO14427.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 263..1063 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:39 Download gff for BO14427.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 263..1063 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:20 Download gff for BO14427.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 263..1063 17..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:27 Download gff for BO14427.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 263..1063 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:27 Download gff for BO14427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22390042..22390073 17..48 100 -> Plus
3R 22391194..22391306 49..161 100 -> Plus
3R 22391369..22391863 162..656 99 -> Plus
3R 22391920..22392080 657..819 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:39 Download gff for BO14427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18215764..18215795 17..48 100 -> Plus
arm_3R 18216916..18217028 49..161 100 -> Plus
arm_3R 18217091..18217585 162..656 99 -> Plus
arm_3R 18217642..18217802 657..819 98   Plus

BO14427.pep Sequence

Translation from 16 to 835

> BO14427.pep
MVFFKFLKSKLSQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGV
QEALTVAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKED
WRLCERHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFY
TICSNPIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCV
HGTVARALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLG
DQEYIRRKTAQVAAIGDASFLDH

BO14427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-PA 267 CG7059-PA 1..267 1..267 1414 100 Plus
CG7059-PD 262 CG7059-PD 7..262 12..267 1360 100 Plus
CG7059-PC 253 CG7059-PC 1..253 15..267 1345 100 Plus
Pglym78-PC 255 CG1721-PC 6..254 20..268 504 41.4 Plus
Pglym78-PB 255 CG1721-PB 6..254 20..268 504 41.4 Plus