Clone Sequence Records
BO14427.3prime Sequence
800 bp (791 high quality bases) assembled on 2006-05-29
> BO14427.3prime
CGTTTACGGGGCGCCAAACGAATGGTCTAGAAAGCTTGCGTCCCCAATGG
GTGCCACCTGGGCTGTCTTCCGCCTAATATACTCCTGATCCCCCAGATTG
ATGGCAGCTCCAACCAAGCCTCCCGTTTTCAAATCGAACTCATAGACGCG
TGGCACGCAATTTGGAATGTTAACCTTTTCGATGGCCTCGTTGGAGATTC
CCTCAATGTGCTGGACGAGAGCACGGGCCACAGTTCCGTGGACGCACATT
AGTACCCGGGTGCCTTGGAACACTTCCCGCCTGACCTCCTTCCACACGGG
TTTCACTCGATCGACGCACATGTGAAGGGATTCCGCGAGGGGGAACTCAC
CGCGAGGAACATCATCGAATATGGGATTGCTGCAAATGGTGTAGAAGTAG
CGGTTCTTCTCATCGATGGGCGGCGGTACGCAGTCGTATCCACGTCGCCA
GGCCTGAACCTGCTCCTCCCCATAGCGATCGGCTACCACTCGTTTCCGGC
AACCAGTCAGATTTCCGTAGTGCCTTTCGCACAGCCGCCAATCCTCCTTA
ATGGGCACATAGGCGCAGTTCAACTTGGAGAGTATCAATTCGGCCGTTTG
ACGAGATCTGCTCAATACGGATGAATAGACCACGTCGAATTCCAACTCGG
ATTGGACGAGCGCGGGAATCGCCACAGTCAGCGCCTCTTGGACGCCGAAT
TCCCTCAATGGCGCATCATGCCAACCGCAGAATTTGTTCTCAATGTTGAA
ATCACTTTCGCCATGCCTCAAAATCACCAAGCGATTTGTTTTCGTCATAA
BO14427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-PA | 804 | CG7059-RA | 41..797 | 800..44 | 3685 | 99.4 | Minus |
CG7059-PD | 789 | CG7059-RD | 26..782 | 800..44 | 3685 | 99.4 | Minus |
CG7059-PC | 762 | CG7059-RC | 1..755 | 798..44 | 3675 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RD | 1261 | CG7059-RD | 232..992 | 800..40 | 3730 | 99.3 | Minus |
CG7059-RC | 1238 | CG7059-RC | 209..969 | 800..40 | 3730 | 99.3 | Minus |
CG7059-RA | 1332 | CG7059-RA | 303..1063 | 800..40 | 3730 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22391368..22391864 | 696..200 | 2455 | 99.6 | Minus |
3R | 32079331 | 3R | 22391919..22392080 | 201..40 | 780 | 98.8 | Minus |
3R | 32079331 | 3R | 22391202..22391307 | 800..695 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:51:21 has no hits.
BO14427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:36 Download gff for
BO14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-PC | 1..762 | 37..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:18 Download gff for
BO14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-PD | 28..789 | 37..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:55 Download gff for
BO14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 303..1063 | 40..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:40 Download gff for
BO14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 303..1063 | 40..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:40 Download gff for
BO14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22391202..22391306 | 696..800 | 99 | -> | Minus |
3R | 22391369..22391863 | 201..695 | 99 | -> | Minus |
3R | 22391920..22392080 | 40..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:55 Download gff for
BO14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18216924..18217028 | 696..800 | 99 | -> | Minus |
arm_3R | 18217091..18217585 | 201..695 | 99 | -> | Minus |
arm_3R | 18217642..18217802 | 40..200 | 98 | | Minus |
BO14427.5prime Sequence
768 bp (721 high quality bases) assembled on 2006-05-29
> BO14427.5prime
GAAGTTATCACCCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACA
TTGAGGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGC
GTGCCACGCGTCTATGAGTTCGATTTTGAAACGGGAGGCTTGGTTGGAGC
TGCCATCAATCTGGGGGA
BO14427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-PA | 804 | CG7059-RA | 1..752 | 17..768 | 3660 | 99.4 | Plus |
CG7059-PD | 789 | CG7059-RD | 18..737 | 49..768 | 3500 | 99.4 | Plus |
CG7059-PC | 762 | CG7059-RC | 1..710 | 59..768 | 3450 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RA | 1332 | CG7059-RA | 262..1014 | 16..768 | 3705 | 99.5 | Plus |
CG7059-RD | 1261 | CG7059-RD | 224..943 | 49..768 | 3540 | 99.4 | Plus |
CG7059-RC | 1238 | CG7059-RC | 201..920 | 49..768 | 3540 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22391368..22391864 | 161..657 | 2455 | 99.6 | Plus |
3R | 32079331 | 3R | 22391194..22391307 | 49..162 | 570 | 100 | Plus |
3R | 32079331 | 3R | 22391919..22392031 | 656..768 | 535 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:41:26 has no hits.
BO14427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:37 Download gff for
BO14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-PA | 1..751 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:19 Download gff for
BO14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-PA | 1..751 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:27 Download gff for
BO14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 262..1013 | 16..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:44 Download gff for
BO14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 262..1013 | 16..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:44 Download gff for
BO14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22390041..22390073 | 16..48 | 100 | -> | Plus |
3R | 22391194..22391306 | 49..161 | 100 | -> | Plus |
3R | 22391369..22391863 | 162..656 | 99 | -> | Plus |
3R | 22391920..22392030 | 657..767 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:27 Download gff for
BO14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18215763..18215795 | 16..48 | 100 | -> | Plus |
arm_3R | 18216916..18217028 | 49..161 | 100 | -> | Plus |
arm_3R | 18217091..18217585 | 162..656 | 99 | -> | Plus |
arm_3R | 18217642..18217752 | 657..767 | 98 | | Plus |
BO14427.complete Sequence
835 bp assembled on 2009-07-28
GenBank Submission: KX795619
> BO14427.complete
GAAGTTATCACCCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACA
TTGAGGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGC
GTGCCACGCGTCTATGAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGC
TGCCATCAATCTGGGGGATCAGGAGTATATTAGGCGGAAGACAGCCCAGG
TGGCAGCCATTGGTGACGCAAGCTTTCTAGACCAT
BO14427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RA | 804 | CG7059-PA | 1..801 | 17..817 | 3975 | 99.8 | Plus |
CG7059-RD | 789 | CG7059-PD | 18..786 | 49..817 | 3815 | 99.7 | Plus |
CG7059-RC | 762 | CG7059-PC | 1..759 | 59..817 | 3765 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RA | 1332 | CG7059-RA | 262..1063 | 16..817 | 3980 | 99.8 | Plus |
CG7059-RD | 1261 | CG7059-RD | 224..992 | 49..817 | 3815 | 99.7 | Plus |
CG7059-RC | 1238 | CG7059-RC | 201..969 | 49..817 | 3815 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22391368..22391864 | 161..657 | 2455 | 99.6 | Plus |
3R | 32079331 | 3R | 22391919..22392080 | 656..817 | 810 | 100 | Plus |
3R | 32079331 | 3R | 22391194..22391307 | 49..162 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:03:32 has no hits.
BO14427.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-29 17:37:37 Download gff for
BO14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 263..1063 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:39 Download gff for
BO14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 263..1063 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:20 Download gff for
BO14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 263..1063 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:27 Download gff for
BO14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 263..1063 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:27 Download gff for
BO14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22390042..22390073 | 17..48 | 100 | -> | Plus |
3R | 22391194..22391306 | 49..161 | 100 | -> | Plus |
3R | 22391369..22391863 | 162..656 | 99 | -> | Plus |
3R | 22391920..22392080 | 657..819 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:39 Download gff for
BO14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18215764..18215795 | 17..48 | 100 | -> | Plus |
arm_3R | 18216916..18217028 | 49..161 | 100 | -> | Plus |
arm_3R | 18217091..18217585 | 162..656 | 99 | -> | Plus |
arm_3R | 18217642..18217802 | 657..819 | 98 | | Plus |
BO14427.pep Sequence
Translation from 16 to 835
> BO14427.pep
MVFFKFLKSKLSQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGV
QEALTVAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKED
WRLCERHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFY
TICSNPIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCV
HGTVARALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLG
DQEYIRRKTAQVAAIGDASFLDH
BO14427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-PA | 267 | CG7059-PA | 1..267 | 1..267 | 1414 | 100 | Plus |
CG7059-PD | 262 | CG7059-PD | 7..262 | 12..267 | 1360 | 100 | Plus |
CG7059-PC | 253 | CG7059-PC | 1..253 | 15..267 | 1345 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 6..254 | 20..268 | 504 | 41.4 | Plus |
Pglym78-PB | 255 | CG1721-PB | 6..254 | 20..268 | 504 | 41.4 | Plus |