Clone Sequence Records
BO14429.3prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-29
> BO14429.3prime
ATGGTCTAGAAAGCTTGCAAAGTTGATAAAACGGTATGGGTTGAAGCTTT
TCATCTCGTCCAGGGTGTAGCGGTAGCGGATGCCCTTCGAAGGCTCCTCC
TCGGAGCCGTTCGAGTCGTCCTCCTCCTCGCGGATCTCAGAGACCCGCTC
CACCCGGATGCCCTTCATCTGGCAGGCGCGGCGGTACAGCTGCTCCTCCC
GGTCCATGTAAAACTGGCACGATACGCTGTGATTCGGAACGGGCGGCGGT
GGGATCATGGGACTAGCCCCAAATGGAATCCCTGCTGGCCCATACGTAGC
CGGGGCAAACCAGTTGTTGACCAGACCGCCTCCGGGCACCAGCTTCACAG
TCTGGGTCTCCTTGTTCTTTTGCGCCATTTTGATCACCAAGCTTTGACCC
TCGGCGGCATCCATGTCGACTGATAACT
BO14429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-PA | 399 | CG1690-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-RB | 1708 | CG1690-RB | 200..595 | 414..19 | 1980 | 100 | Minus |
| CG1690-RA | 1073 | CG1690-RA | 200..595 | 414..19 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9757406..9757747 | 19..360 | 1710 | 100 | Plus |
| 2R | 25286936 | 2R | 9757815..9757869 | 360..414 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:36:08 has no hits.
BO14429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:40 Download gff for
BO14429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-PA | 1..399 | 15..414 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:23 Download gff for
BO14429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-PA | 1..399 | 15..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:15 Download gff for
BO14429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..603 | 11..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:41 Download gff for
BO14429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..603 | 11..414 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:41 Download gff for
BO14429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9757398..9757746 | 11..359 | 98 | <- | Plus |
| 2R | 9757815..9757869 | 360..414 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:15 Download gff for
BO14429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5644903..5645251 | 11..359 | 98 | <- | Plus |
| arm_2R | 5645320..5645374 | 360..414 | 100 | | Plus |
BO14429.5prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-29
> BO14429.5prime
GAAGTTATCAGTCGACATGGATGCCGCCGAGGGTCAAAGCTTGGTGATCA
AAATGGCGCAAAAGAACAAGGAGACCCAGACTGTGAAGCTGGTGCCCGGA
GGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATGGGCCAGCAGG
GATTCCATTTGGGGCTAGTCCCATGATCCCACCGCCGCCCGTTCCGAATC
ACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCAGCTGTACCGC
CGCGCCTGCCAGATGAAGGGCATCCGGGTGGAGCGGGTCTCTGAGATCCG
CGAGGAGGAGGACGACTCGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCA
TCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAACCCATACCGT
TTTATCAACTTTGCAAGCTTTCTAGACC
BO14429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-PA | 399 | CG1690-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-RB | 1708 | CG1690-RB | 200..595 | 17..412 | 1980 | 100 | Plus |
| CG1690-RA | 1073 | CG1690-RA | 200..595 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9757406..9757747 | 412..71 | 1710 | 100 | Minus |
| 2R | 25286936 | 2R | 9757815..9757869 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:42:03 has no hits.
BO14429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:41 Download gff for
BO14429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:24 Download gff for
BO14429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:44 Download gff for
BO14429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..603 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:15 Download gff for
BO14429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..603 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:15 Download gff for
BO14429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9757398..9757746 | 72..420 | 98 | <- | Minus |
| 2R | 9757815..9757869 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:44 Download gff for
BO14429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5644903..5645251 | 72..420 | 98 | <- | Minus |
| arm_2R | 5645320..5645374 | 17..71 | 100 | | Minus |
BO14429.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ633119
> BO14429.complete
GAAGTTATCAGTCGACATGGATGCCGCCGAGGGTCAAAGCTTGGTGATCA
AAATGGCGCAAAAGAACAAGGAGACCCAGACTGTGAAGCTGGTGCCCGGA
GGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATGGGCCAGCAGG
GATTCCATTTGGGGCTAGTCCCATGATCCCACCGCCGCCCGTTCCGAATC
ACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCAGCTGTACCGC
CGCGCCTGCCAGATGAAGGGCATCCGGGTGGAGCGGGTCTCTGAGATCCG
CGAGGAGGAGGACGACTCGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCA
TCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAACCCATACCGT
TTTATCAACTTTGCAAGCTTTCTAGACCAT
BO14429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-RB | 399 | CG1690-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
| CG1690-RA | 399 | CG1690-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-RB | 1708 | CG1690-RB | 200..595 | 17..412 | 1980 | 100 | Plus |
| CG1690-RA | 1073 | CG1690-RA | 200..595 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9757406..9757747 | 412..71 | 1710 | 100 | Minus |
| 2R | 25286936 | 2R | 9757815..9757869 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:08:40 has no hits.
BO14429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:59 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:11 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..603 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:48 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..595 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:00 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..603 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:51 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1690-RA | 200..595 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:51 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9757404..9757746 | 72..414 | 99 | <- | Minus |
| 2R | 9757815..9757869 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:48 Download gff for
BO14429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5644909..5645251 | 72..414 | 99 | <- | Minus |
| arm_2R | 5645320..5645374 | 17..71 | 100 | | Minus |
BO14429.pep Sequence
Translation from 16 to 430
> BO14429.pep
MDAAEGQSLVIKMAQKNKETQTVKLVPGGGLVNNWFAPATYGPAGIPFGA
SPMIPPPPVPNHSVSCQFYMDREEQLYRRACQMKGIRVERVSEIREEEDD
SNGSEEEPSKGIRYRYTLDEMKSFNPYRFINFASFLDH
BO14429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1690-PB | 132 | CG1690-PB | 1..132 | 1..132 | 704 | 100 | Plus |
| CG1690-PA | 132 | CG1690-PA | 1..132 | 1..132 | 704 | 100 | Plus |
