Clone Sequence Records
BO14430.3prime Sequence
914 bp (722 high quality bases) assembled on 2006-05-29
> BO14430.3prime
ATGGTCTAGAAAGCTTGCGTGTCCGTCTGCCTCCGCTAGGTTTTCCTTCG
TGTAATCCAAAACACGACGCTTCATACGACAGATGTATTGGCTATGCATG
AGGTACATTTTGAGGAATCCCTTGATCGCTATGAAAGTCAATCCCCCAAG
AAGAGTTTGTTGCAATCTATCGTCGACAGAGCTGTAAAGAACTCTACCCA
CGTACATGGATATGGTGGGCAAGAGGATGGCTCCACAGACCACCCGCGAT
GCCGAATATTCGGTCATTGGTGCAGAAGGGTATGGTTCGGTCTGGTGGTC
ATATTTCCGTCCTAGGCACATCATTGAAAGACTTCGCAGCAATGAATAAC
ATATTCTAATGAAGCGCAACAGGGCATCTTCCCAGGGAATTAAGCGTCCA
AGTATCAGAACTACCGAGATTAATGGGAATCCGACCAGAACAACCAACAG
GTCTCCCGATTGAATTATTTGATGAACGTGACCTTCCTGACCAGTGATCT
GCAAATATGTTTTTGCTCCGAATGAAACCGCTGACCAATAGGCAAAGACC
ACAGTGAAGACATTGGCCAGGCAATTATATAAGTTTGTTAGGATAAGATC
GTTGGTCAGCTCCAAAGCCCTATCGAAAATCCAGAGATTCGGGTATGCAA
TGGTGTACTCCGTTTGGCATTGTGGACAGGACACGGCTTGCAGATTGTTG
TTTATTCGGGTCTTCTCGTCGATCCAGAGGGAAATGCAGCTCTGGTGCAC
CCACTTATTGGTTCCTCGGCAGAGACATGGATTCACCCAAGCCTGGCGAC
CTGCCTCCCCATCGGTCTCAAAACAGACCCAGCAACAGCGCTCCAGTTCC
GTCGAATCTCCTCCAGCTGAAGCTTGTGGCGCAGCAACGTTGCTAGCCAT
GTCGACTGATAACT
BO14430.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-PA | 885 | CG17991-RA | 1..882 | 900..19 | 4235 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 1064 | CG17991-RA | 66..947 | 900..19 | 4305 | 99.2 | Minus |
CG9855-RC | 1718 | CG9855-RC | 406..549 | 793..650 | 195 | 76.6 | Minus |
CG9855-RA | 1533 | CG9855-RA | 406..549 | 793..650 | 195 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27241332..27242213 | 900..19 | 4305 | 99.2 | Minus |
3R | 32079331 | 3R | 4397260..4397403 | 650..793 | 195 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:53:45 has no hits.
BO14430.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:42 Download gff for
BO14430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-PA | 1..885 | 18..900 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:26 Download gff for
BO14430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-PA | 1..885 | 18..900 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:08:27 Download gff for
BO14430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..947 | 19..910 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:20 Download gff for
BO14430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..947 | 19..910 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:20 Download gff for
BO14430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27241325..27242213 | 19..910 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:08:27 Download gff for
BO14430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23067047..23067935 | 19..910 | 98 | | Minus |
BO14430.5prime Sequence
910 bp (768 high quality bases) assembled on 2006-05-29
> BO14430.5prime
GAAGTTATCAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAG
CTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAG
ACCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCG
AGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACG
AGAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGC
CAAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGC
TTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGG
CCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGA
GCAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAAT
AATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCT
CGGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTG
CGCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTG
CCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAA
TGACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCC
ACCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAG
ATTGCAACAAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAGGGAT
TCCTCAAAATGTACCTCATGCATAGCCAATACATCTGTCGTATGAAGCGT
CGTGTTTTGGATACACGAAGGAAAACCTAGCGGAGGCAGACGGACACGCA
AGCTTTCTAG
BO14430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-PA | 885 | CG17991-RA | 1..846 | 17..862 | 4155 | 99.6 | Plus |
CG17991-PA | 885 | CG17991-RA | 847..882 | 862..897 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 1064 | CG17991-RA | 66..947 | 17..897 | 4340 | 99.5 | Plus |
CG9855-RC | 1718 | CG9855-RC | 355..549 | 73..267 | 210 | 75.1 | Plus |
CG9855-RA | 1533 | CG9855-RA | 355..549 | 73..267 | 210 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27241332..27242213 | 17..897 | 4315 | 99.5 | Plus |
3R | 32079331 | 3R | 4397260..4397454 | 267..73 | 210 | 73.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:10:41 has no hits.
BO14430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:43 Download gff for
BO14430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-PA | 1..885 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:27 Download gff for
BO14430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-PA | 1..885 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:59:49 Download gff for
BO14430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..947 | 7..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:00 Download gff for
BO14430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..947 | 7..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:00 Download gff for
BO14430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27241325..27242213 | 7..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:59:49 Download gff for
BO14430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23067047..23067935 | 7..897 | 99 | | Plus |
BO14430.complete Sequence
916 bp assembled on 2006-10-11
GenBank Submission: FJ633120
> BO14430.complete
GAAGTTATCAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAG
CTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAG
ACCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCG
AGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACG
AGAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGC
CAAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGC
TTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGG
CCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGA
GCAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAAT
AATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCT
CGGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTG
CGCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTG
CCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAA
TGACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCC
ACCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAG
ATTGCAACAAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAGGGAT
TCCTCAAAATGTACCTCATGCATAGCCAATACATCTGTCGTATGAAGCGT
CGTGTTTTGGATTACACGAAGGAAAACCTAGCGGAGGCAGACGGACACGC
AAGCTTTCTAGACCAT
BO14430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 885 | CG17991-PA | 1..882 | 17..898 | 4365 | 99.7 | Plus |
CG9855-RC | 1149 | CG9855-PC | 183..377 | 73..267 | 210 | 73.8 | Plus |
CG9855-RA | 1149 | CG9855-PA | 183..377 | 73..267 | 210 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 1064 | CG17991-RA | 66..947 | 17..898 | 4365 | 99.7 | Plus |
CG9855-RC | 1718 | CG9855-RC | 355..549 | 73..267 | 210 | 73.8 | Plus |
CG9855-RA | 1533 | CG9855-RA | 355..549 | 73..267 | 210 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27241332..27242213 | 17..898 | 4365 | 99.7 | Plus |
3R | 32079331 | 3R | 4397260..4397454 | 267..73 | 210 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:10:45 has no hits.
BO14430.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:02 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 1..885 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:13 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..947 | 7..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:42 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 66..947 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:02 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..947 | 7..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:00 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 66..947 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:00 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27241332..27242213 | 17..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:42 Download gff for
BO14430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23067054..23067935 | 17..900 | 99 | | Plus |
BO14430.pep Sequence
Translation from 16 to 916
> BO14430.pep
MASNVAAPQASAGGDSTELERCCWICFETDKEAGRQAWVNPCLCRGTNKW
VHQSCISLWIDEKTRINNNLQAVSCPQCQTEYTIAYPNLWIFDRALELTN
DLILTNLYNCLANVFTVVFAYWSAVSFGAKTYLQITGQEGHVHQIIQSGD
LLVVLVGFPLISVVLILGRLIPWEDALLRFIRICYSLLRSLSMMCLGRKY
DHQTEPYPSAPMTEYSASRVVCGAILLPTISMYVGRVLYSSVDDRLQQTL
LGGLTFIAIKGFLKMYLMHSQYICRMKRRVLDYTKENLAEADGHASFLDH
BO14430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-PA | 294 | CG17991-PA | 1..294 | 1..294 | 1563 | 100 | Plus |
CG9855-PC | 382 | CG9855-PC | 46..335 | 2..288 | 715 | 52.4 | Plus |
CG9855-PA | 382 | CG9855-PA | 46..335 | 2..288 | 715 | 52.4 | Plus |
CG16781-PA | 383 | CG16781-PA | 38..332 | 20..294 | 493 | 37.7 | Plus |
CG16781-PB | 386 | CG16781-PB | 41..335 | 20..294 | 493 | 37.7 | Plus |