Clone Sequence Records
BO14434.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-29
> BO14434.3prime
ATGGTCTAGAAAGCTTGCGCTGGTTGGGAACAGGATCTCCTCCAGCTTGG
CGTTGAACAGAGACTTGACCGTCTCGTCGGTGGTGTCGATGATCAGCTTG
TAGTAGCCCGATCGCCGAAGCAGTCGTTCTTCGTCATCAGCCACCCCGTA
GATGTCCTCGATGGGCATCAGGATCTCGCTCTCATTCGGCAGGATTAGCT
TGCGTGCATCCTTGCGGAACACGGCCACCGCCTTTACCATGTTCGTGTGT
GCCCTCACATAGTGCTGGAAGGTGAGGCTCTTACGCTTCGCTGAGATCTT
CGACTGTATGCGATCGAGACGGGCTATCAGGCGGAGCAGTATGAACCGGG
CATAGCGATCCTTGATCTCCAGCAAGGACATCTCACTGCCATTGTCGAGG
GCTGGGCGCAGATAGACGCTCAGGATGATGAATACGAAAATGGCGTTGAT
CGCGAAGATCAAGAGCAGTATAGCCAGCTGGATGCAGTCGATGTCCTGCG
AGAAGACCTCCGCCAAACGCTTCCAGTACATGAGGTCGTAGTGGTGCACG
CTCCATTGGTAGTGCAAGTAGGCTGTTACTGCCACGCCCAGTCCGCTGTA
GAGCGCTATGTACGGGTAGTTCGCGTGGAAGAAGTCATTAAACTGCACTC
GTAGCTTCTGCCACAGCTCCATGTCGACTGATAACT
BO14434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-PA | 657 | CG6497-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-RB | 1561 | CG6497-RB | 115..768 | 672..19 | 3270 | 100 | Minus |
| CG6497-RA | 1206 | CG6497-RA | 115..768 | 672..19 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17253170..17253823 | 19..672 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:18:12 has no hits.
BO14434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:51 Download gff for
BO14434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:36 Download gff for
BO14434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:06:03 Download gff for
BO14434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 111..768 | 19..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:25 Download gff for
BO14434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 111..768 | 19..680 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:25 Download gff for
BO14434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17253170..17253827 | 19..680 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:06:03 Download gff for
BO14434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17246270..17246927 | 19..680 | 99 | | Plus |
BO14434.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-29
> BO14434.5prime
GAAGTTATCAGTCGACATGGAGCTGTGGCAGAAGCTACGAGTGCAGTTTA
ATGACTTCTTCCACGCGAACTACCCGTACATAGCGCTCTACAGCGGACTG
GGCGTGGCAGTAACAGCCTACTTGCACTACCAATGGAGCGTGCACCACTA
CGACCTCATGTACTGGAAGCGTTTGGCGGAGGTCTTCTCGCAGGACATCG
ACTGCATCCAGCTGGCTATACTGCTCTTGATCTTCGCGATCAACGCCATT
TTCGTATTCATCATCCTGAGCGTCTATCTGCGCCCAGCCCTCGACAATGG
CAGTGAGATGTCCTTGCTGGAGATCAAGGATCGCTATGCCCGGTTCATAC
TGCTCCGCCTGATAGCCCGTCTCGATCGCATACAGTCGAAGATCTCAGCG
AAGCGTAAGAGCCTCACCTTCCAGCACTATGTGAGGGCACACACGAACAT
GGTAAAGGCGGTGGCCGTGTTCCGCAAGGATGCACGCAAGCTAATCCTGC
CGAATGAGAGCGAGATCCTGATGCCCATCGAGGACATCTACGGGGTGGCT
GATGACGAAGAACGACTGCTTCGGCGATCGGGCTACTACAAGCTGATCAT
CGACACCACCGACGAGACGGTCAAGTCTCTGTTCAACGCCAAGCTGGAGG
AGATCCTGTTCCCAACCAGCGCAAGCTTTCTAGACC
BO14434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-PA | 657 | CG6497-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-RB | 1561 | CG6497-RB | 115..768 | 17..670 | 3270 | 100 | Plus |
| CG6497-RA | 1206 | CG6497-RA | 115..768 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17253170..17253823 | 670..17 | 3270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:38:16 has no hits.
BO14434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:52 Download gff for
BO14434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:37 Download gff for
BO14434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:41 Download gff for
BO14434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 111..768 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:39 Download gff for
BO14434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 111..768 | 9..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:39 Download gff for
BO14434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17253170..17253827 | 9..670 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:41 Download gff for
BO14434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17246270..17246927 | 9..670 | 99 | | Minus |
BO14434.complete Sequence
688 bp assembled on 2006-10-11
GenBank Submission: FJ633121
> BO14434.complete
GAAGTTATCAGTCGACATGGAGCTGTGGCAGAAGCTACGAGTGCAGTTTA
ATGACTTCTTCCACGCGAACTACCCGTACATAGCGCTCTACAGCGGACTG
GGCGTGGCAGTAACAGCCTACTTGCACTACCAATGGAGCGTGCACCACTA
CGACCTCATGTACTGGAAGCGTTTGGCGGAGGTCTTCTCGCAGGACATCG
ACTGCATCCAGCTGGCTATACTGCTCTTGATCTTCGCGATCAACGCCATT
TTCGTATTCATCATCCTGAGCGTCTATCTGCGCCCAGCCCTCGACAATGG
CAGTGAGATGTCCTTGCTGGAGATCAAGGATCGCTATGCCCGGTTCATAC
TGCTCCGCCTGATAGCCCGTCTCGATCGCATACAGTCGAAGATCTCAGCG
AAGCGTAAGAGCCTCACCTTCCAGCACTATGTGAGGGCACACACGAACAT
GGTAAAGGCGGTGGCCGTGTTCCGCAAGGATGCACGCAAGCTAATCCTGC
CGAATGAGAGCGAGATCCTGATGCCCATCGAGGACATCTACGGGGTGGCT
GATGACGAAGAACGACTGCTTCGGCGATCGGGCTACTACAAGCTGATCAT
CGACACCACCGACGAGACGGTCAAGTCTCTGTTCAACGCCAAGCTGGAGG
AGATCCTGTTCCCAACCAGCGCAAGCTTTCTAGACCAT
BO14434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-RB | 657 | CG6497-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
| CG6497-RA | 657 | CG6497-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-RB | 1561 | CG6497-RB | 115..768 | 17..670 | 3270 | 100 | Plus |
| CG6497-RA | 1206 | CG6497-RA | 115..768 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17253170..17253823 | 670..17 | 3270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:59 has no hits.
BO14434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:03 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:14 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 177..834 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:28 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 115..768 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:04 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 177..834 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:31 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6497-RA | 115..768 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:31 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17253168..17253823 | 17..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:28 Download gff for
BO14434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17246268..17246923 | 17..672 | 99 | | Minus |
BO14434.pep Sequence
Translation from 16 to 688
> BO14434.pep
MELWQKLRVQFNDFFHANYPYIALYSGLGVAVTAYLHYQWSVHHYDLMYW
KRLAEVFSQDIDCIQLAILLLIFAINAIFVFIILSVYLRPALDNGSEMSL
LEIKDRYARFILLRLIARLDRIQSKISAKRKSLTFQHYVRAHTNMVKAVA
VFRKDARKLILPNESEILMPIEDIYGVADDEERLLRRSGYYKLIIDTTDE
TVKSLFNAKLEEILFPTSASFLDH
BO14434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6497-PB | 218 | CG6497-PB | 1..218 | 1..218 | 1108 | 100 | Plus |
| CG6497-PA | 218 | CG6497-PA | 1..218 | 1..218 | 1108 | 100 | Plus |
