Clone Sequence Records
BO14435.3prime Sequence
765 bp (743 high quality bases) assembled on 2006-05-29
> BO14435.3prime
ATGGTCTAGAAAGCTTGCATTGCGAGACAATCCGATAATGGTCAGTATGT
ACATGAAGATGTTAATAATGTCCAGGTAGAGGTTTAGAGCGGCGAAGATG
TATTCCTCAGGACTGATGGAGTACTTATGATTACCACCCAGCATCAACTG
GGTATCGTACACCAAGTAAACGGAGAAGAGCAATGCTCCCAAGGAGGCAT
AGACCAGTCCGATCACCTTGCCTGGGATGAAGATAGCGATTATGCCAAAA
ATGATGAAGACCACCAGACAGGCCACCAACACTCCTCCGCACATCGTAAA
ATCGTATTTGGTCTGCAGGGCAAACAGGGTGAGTCCCAGGGCCACCGCGG
CCGTAATTCCCACTGCCATCAGGACCTCATCAGCCTCAAACTGTCCGGCG
ACCATACCCAGAAGGAACGACTCCGCCACGGTGAACAGGAAAAGAAAGAT
GAAGTTAAGAGGCGTCTTACGGCGTACACTTTCGCAGCAGGCCATACAGA
TCATGGTCACGATAAGAACGGCCAAGGCTATCCAAAACAGTGCCGGATTT
TTTTGCACCCATTCCTGCGAAGCTTTCGAGAACGTAAATACGCTAACAAA
ACCGAAAGTGATCAGCAATTGGCACATCAATATCAAGTAGACCTTTCGAA
TAAATCCCTTCCGGATGCTCTGGTCATCGAAGGCGAAGCTCTTGTCCGCT
TCCGCATCTGTGTATGCGCCAGTTTCATCGCCTTGCTGGTAGTGATACAT
GTCGACTGATAACTT
BO14435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-PB | 735 | CG3814-RB | 1..732 | 750..19 | 3585 | 99.5 | Minus |
| CG3814-PA | 720 | CG3814-RA | 28..717 | 708..19 | 3375 | 99.5 | Minus |
| CG3798-PB | 942 | Nmda1-RB | 835..917 | 123..41 | 165 | 87.9 | Minus |
| CG3798-PA | 942 | Nmda1-RA | 835..917 | 123..41 | 165 | 87.9 | Minus |
| CG3798-PF | 951 | Nmda1-RF | 844..926 | 123..41 | 165 | 87.9 | Minus |
| CG3798-PD | 975 | Nmda1-RD | 868..950 | 123..41 | 165 | 87.9 | Minus |
| CG3798-PC | 975 | Nmda1-RC | 868..950 | 123..41 | 165 | 87.9 | Minus |
| CG3798-PE | 975 | Nmda1-RE | 868..950 | 123..41 | 165 | 87.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..908 | 750..19 | 3615 | 99.6 | Minus |
| CG3814-RC | 1011 | CG3814-RC | 185..899 | 733..19 | 3530 | 99.6 | Minus |
| CG3814-RD | 933 | CG3814-RD | 132..821 | 708..19 | 3405 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875276..12875780 | 19..523 | 2480 | 99.4 | Plus |
| 2R | 25286936 | 2R | 12876101..12876209 | 625..733 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 12875841..12875944 | 522..625 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 12877671..12878016 | 32..377 | 395 | 74.3 | Plus |
| 3R | 32079331 | 3R | 14152993..14153147 | 47..201 | 295 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:54:18 has no hits.
BO14435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:53 Download gff for
BO14435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-PB | 1..735 | 18..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:38 Download gff for
BO14435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-PB | 1..735 | 18..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:49:59 Download gff for
BO14435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 19..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:58 Download gff for
BO14435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 19..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:58 Download gff for
BO14435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875276..12875779 | 19..522 | 99 | <- | Plus |
| 2R | 12875842..12875943 | 523..624 | 100 | <- | Plus |
| 2R | 12876101..12876207 | 625..731 | 100 | <- | Plus |
| 2R | 12876772..12876790 | 732..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:49:59 Download gff for
BO14435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762781..8763284 | 19..522 | 99 | <- | Plus |
| arm_2R | 8763347..8763448 | 523..624 | 100 | <- | Plus |
| arm_2R | 8763606..8763712 | 625..731 | 100 | <- | Plus |
| arm_2R | 8764277..8764295 | 732..750 | 100 | | Plus |
BO14435.5prime Sequence
764 bp (756 high quality bases) assembled on 2006-05-29
> BO14435.5prime
GAAGTTATCAGTCGACATGTATCACTACCAGCAAGGCGATGAAACTGGCG
CATACACAGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGC
ATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTGCCAATT
GCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGC
AGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTT
CTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAA
GACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGT
TCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATG
GCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCT
GCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTC
TGGTGGTCTTCATCATTTTTGGCATAATCGCTATCTTCATCCCAGGCAAG
GTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTA
CTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAAGTACTCCA
TCAGTCCTGAGGAATACATCTTCCCCGCTCTAAACCTCTACCTGGACATT
ATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCGCAATGC
AAGCTTTCTAGACC
BO14435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-PB | 735 | CG3814-RB | 1..732 | 17..748 | 3560 | 99.4 | Plus |
| CG3814-PA | 720 | CG3814-RA | 28..717 | 59..748 | 3350 | 99.4 | Plus |
| CG3798-PB | 942 | Nmda1-RB | 871..917 | 680..726 | 135 | 91.4 | Plus |
| CG3798-PA | 942 | Nmda1-RA | 871..917 | 680..726 | 135 | 91.4 | Plus |
| CG3798-PF | 951 | Nmda1-RF | 880..926 | 680..726 | 135 | 91.4 | Plus |
| CG3798-PD | 975 | Nmda1-RD | 904..950 | 680..726 | 135 | 91.4 | Plus |
| CG3798-PC | 975 | Nmda1-RC | 904..950 | 680..726 | 135 | 91.4 | Plus |
| CG3798-PE | 975 | Nmda1-RE | 904..950 | 680..726 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..908 | 17..748 | 3600 | 99.5 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 185..899 | 34..748 | 3515 | 99.4 | Plus |
| CG3814-RD | 933 | CG3814-RD | 132..821 | 59..748 | 3390 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875276..12875780 | 748..244 | 2465 | 99.2 | Minus |
| 2R | 25286936 | 2R | 12876101..12876209 | 142..34 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 245..142 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 12877671..12878016 | 735..390 | 380 | 74 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 720..566 | 280 | 78.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:22:19 has no hits.
BO14435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:54 Download gff for
BO14435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-PB | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:40 Download gff for
BO14435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-PB | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:45 Download gff for
BO14435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:50 Download gff for
BO14435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 17..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:50 Download gff for
BO14435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875276..12875779 | 245..748 | 99 | <- | Minus |
| 2R | 12875842..12875943 | 143..244 | 100 | <- | Minus |
| 2R | 12876101..12876207 | 36..142 | 100 | <- | Minus |
| 2R | 12876772..12876790 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:45 Download gff for
BO14435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762781..8763284 | 245..748 | 99 | <- | Minus |
| arm_2R | 8763347..8763448 | 143..244 | 100 | <- | Minus |
| arm_2R | 8763606..8763712 | 36..142 | 100 | <- | Minus |
| arm_2R | 8764277..8764295 | 17..35 | 100 | | Minus |
BO14435.complete Sequence
766 bp assembled on 2006-10-11
GenBank Submission: FJ633122
> BO14435.complete
GAAGTTATCAGTCGACATGTATCACTACCAGCAAGGCGATGAAACTGGCG
CATACACAGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGC
ATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTGCCAATT
GCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGC
AGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTT
CTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAA
GACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGT
TCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATG
GCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCT
GCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTC
TGGTGGTCTTCATCATTTTTGGCATAATCGCTATCTTCATCCCAGGCAAG
GTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTA
CTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAAGTACTCCA
TCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACCTGGACATT
ATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCGCAATGC
AAGCTTTCTAGACCAT
BO14435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 735 | CG3814-PB | 1..732 | 17..748 | 3615 | 99.6 | Plus |
| CG3814-RD | 720 | CG3814-PD | 28..717 | 59..748 | 3405 | 99.6 | Plus |
| CG3814-RA | 720 | CG3814-PA | 28..717 | 59..748 | 3405 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..908 | 17..748 | 3615 | 99.6 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 185..899 | 34..748 | 3530 | 99.6 | Plus |
| CG3814-RD | 933 | CG3814-RD | 132..821 | 59..748 | 3405 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875276..12875780 | 748..244 | 2480 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12876101..12876209 | 142..34 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 245..142 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 12877671..12878016 | 735..390 | 395 | 74.3 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 720..566 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:15 has no hits.
BO14435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:06 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:16 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:09 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:06 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:09 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..908 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:09 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875274..12875779 | 245..750 | 99 | <- | Minus |
| 2R | 12875842..12875943 | 143..244 | 100 | <- | Minus |
| 2R | 12876101..12876207 | 36..142 | 100 | <- | Minus |
| 2R | 12876772..12876790 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:09 Download gff for
BO14435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762779..8763284 | 245..750 | 99 | <- | Minus |
| arm_2R | 8763347..8763448 | 143..244 | 100 | <- | Minus |
| arm_2R | 8763606..8763712 | 36..142 | 100 | <- | Minus |
| arm_2R | 8764277..8764295 | 17..35 | 100 | | Minus |
BO14435.pep Sequence
Translation from 16 to 766
> BO14435.pep
MYHYQQGDETGAYTDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFG
FVSVFTFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNF
IFLFLFTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYD
FTMCGGVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDT
QLMLGGNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRNASFLDH
BO14435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-PB | 244 | CG3814-PB | 1..244 | 1..244 | 1238 | 100 | Plus |
| CG3814-PD | 239 | CG3814-PD | 10..239 | 15..244 | 1157 | 100 | Plus |
| CG3814-PA | 239 | CG3814-PA | 10..239 | 15..244 | 1157 | 100 | Plus |
| CG3814-PC | 203 | CG3814-PC | 1..203 | 42..244 | 1023 | 100 | Plus |
| Nmda1-PH | 313 | CG3798-PH | 79..313 | 11..244 | 877 | 71.5 | Plus |
