Clone Sequence Records
BO14436.3prime Sequence
818 bp (725 high quality bases) assembled on 2006-05-29
> BO14436.3prime
ATGGTCTAGAAAGCTTGCGATGCGACTGACATACTTTAAATTTGCTATGT
TTTGGTGGGAACACTTCAGCTTCAAGATGGGGCAGGTTGGAATCGGGTAG
ATACACTTGCAGTAGACAAATTGATTGTTAAGATACTCCTCAAACTCCTC
CATGGCGGATTCGTTTTGGAGCAGATCGCGGTATTCCTCGACACTCTCCA
GATTCACGGGATCCAGCTGATGCATGAAGCACTTGAGCTTCAGCACTGTT
GCATACAAATAGTTGAATATGTCGACGGCCATGATCTTGTGGTACTTGAT
GCTTCTATGATGGCTATCGCCCATGATGAAAGGCGTTTCCTGTGCCTTGT
CCAGCCGTTCGTAGGCGGCATAGAACTCCTTGCACTGCTGATTGATTTCC
AACAGGGTGTTTTTCATTTTGTTGTTTGAAGCTCGCAGCACTTCCAATTT
TTCCTCATATTCATTGATAATGGCCTCCTCGGTGGACAAGGTGTACACTT
CGGGATAGCGACAGCTCTGCTCTGAACTGATTAGAATCAGATATCGCTGG
GTTAGCAGCCATATCCGTTCAACCAGTATCTTTTGGGCCTTCATTTCGCA
CTTGTATAGATTGTAGTATTCCTTATAACGCATCTCTAACTTGACAAGGA
GACCCAGAACTTCTGCCTCAATCCCGTAGTGCTTCTTGAACTGCTTGGTT
AGATGCGGCTCCTCATCCTCCACCTTGTTTGATCTGTTATCCGATCCCCG
CTCCAACTTGCCCGCCACTATGGGTTCCAACATCAATTCAACTCTGTGTT
CCATGTCGACTGATAACT
BO14436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-PA | 789 | CG31910-RA | 1..786 | 804..19 | 3780 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 905 | CG31910-RA | 81..866 | 804..19 | 3840 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6744702..6745107 | 19..424 | 1985 | 99.3 | Plus |
2L | 23513712 | 2L | 6745163..6745542 | 425..804 | 1855 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-11 09:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 2005..2063 | 460..403 | 112 | 67.8 | Minus |
BO14436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:55 Download gff for
BO14436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-PA | 1..789 | 18..804 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:42 Download gff for
BO14436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-PA | 1..789 | 18..804 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:14 Download gff for
BO14436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..875 | 13..804 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:11 Download gff for
BO14436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..875 | 13..804 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:11 Download gff for
BO14436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6744693..6745107 | 13..424 | 98 | <- | Plus |
2L | 6745163..6745542 | 425..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:14 Download gff for
BO14436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6744693..6745107 | 13..424 | 98 | <- | Plus |
arm_2L | 6745163..6745542 | 425..804 | 99 | | Plus |
BO14436.5prime Sequence
818 bp (779 high quality bases) assembled on 2006-05-29
> BO14436.5prime
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCAACCTGCCCCATCTTGAA
GCTGAAGTGTTCCCACCAAAACATAGCAAATTTAAAGTATGTCAGTCGCA
TCGCAAGCTTTCTAGACC
BO14436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-PA | 789 | CG31910-RA | 1..786 | 17..802 | 3855 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 905 | CG31910-RA | 81..866 | 17..802 | 3885 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6744702..6745107 | 802..397 | 1985 | 99.3 | Minus |
2L | 23513712 | 2L | 6745163..6745542 | 396..17 | 1900 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 2005..2063 | 361..418 | 112 | 67.8 | Plus |
BO14436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:56 Download gff for
BO14436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-PA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:43 Download gff for
BO14436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-PA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:16 Download gff for
BO14436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..875 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:22 Download gff for
BO14436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..875 | 17..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:22 Download gff for
BO14436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6744693..6745107 | 397..808 | 98 | <- | Minus |
2L | 6745163..6745542 | 17..396 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:16 Download gff for
BO14436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6744693..6745107 | 397..808 | 98 | <- | Minus |
arm_2L | 6745163..6745542 | 17..396 | 100 | | Minus |
BO14436.complete Sequence
820 bp assembled on 2006-10-11
GenBank Submission: FJ633123
> BO14436.complete
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCAACCTGCCCCATCTTGAA
GCTGAAGTGTTCCCACCAAAACATAGCAAATTTAAAGTATGTCAGTCGCA
TCGCAAGCTTTCTAGACCAT
BO14436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 789 | CG31910-PA | 1..786 | 17..802 | 3885 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 905 | CG31910-RA | 81..866 | 17..802 | 3885 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6744702..6745107 | 802..397 | 1985 | 99.3 | Minus |
2L | 23513712 | 2L | 6745163..6745542 | 396..17 | 1900 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 17:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 2005..2063 | 361..418 | 112 | 67.8 | Plus |
BO14436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:11 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:17 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 68..862 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:49 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..866 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:11 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 68..862 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:41 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..866 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:41 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6744700..6745107 | 397..804 | 98 | <- | Minus |
2L | 6745163..6745542 | 17..396 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:49 Download gff for
BO14436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6744700..6745107 | 397..804 | 98 | <- | Minus |
arm_2L | 6745163..6745542 | 17..396 | 100 | | Minus |
BO14436.pep Sequence
Translation from 16 to 820
> BO14436.pep
MEHRVELMLEPIVAGKLERRSDNRSNKVEDEEPHLTKQLKKHYGIEAEVL
GLLVKLEMRYKEYYNLYKCEMKAQKILVERIWLLTQRYLILISSEQSCRY
PEVYTLSTEEAIINEYEEKLEVLRASNNKMKNTLLEINQQCKEFYAAYER
LDKAQETPFIMGDSHHRSIKYHKIMAVDIFNYLYATVLKLKCFMHQLDPV
NLESVEEYRDLLQNESAMEEFEEYLNNQFVYCKCIYPIPTCPILKLKCSH
QNIANLKYVSRIASFLDH
BO14436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-PA | 262 | CG31910-PA | 1..262 | 1..262 | 1369 | 100 | Plus |
CG30391-PA | 338 | CG30391-PA | 34..234 | 39..242 | 325 | 30.9 | Plus |
CG30393-PA | 354 | CG30393-PA | 39..234 | 44..242 | 300 | 31.7 | Plus |