Clone BO14436 Report

Search the DGRC for BO14436

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG31910-RA
Protein status:BO14436.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO14436.3prime Sequence

818 bp (725 high quality bases) assembled on 2006-05-29

> BO14436.3prime
ATGGTCTAGAAAGCTTGCGATGCGACTGACATACTTTAAATTTGCTATGT
TTTGGTGGGAACACTTCAGCTTCAAGATGGGGCAGGTTGGAATCGGGTAG
ATACACTTGCAGTAGACAAATTGATTGTTAAGATACTCCTCAAACTCCTC
CATGGCGGATTCGTTTTGGAGCAGATCGCGGTATTCCTCGACACTCTCCA
GATTCACGGGATCCAGCTGATGCATGAAGCACTTGAGCTTCAGCACTGTT
GCATACAAATAGTTGAATATGTCGACGGCCATGATCTTGTGGTACTTGAT
GCTTCTATGATGGCTATCGCCCATGATGAAAGGCGTTTCCTGTGCCTTGT
CCAGCCGTTCGTAGGCGGCATAGAACTCCTTGCACTGCTGATTGATTTCC
AACAGGGTGTTTTTCATTTTGTTGTTTGAAGCTCGCAGCACTTCCAATTT
TTCCTCATATTCATTGATAATGGCCTCCTCGGTGGACAAGGTGTACACTT
CGGGATAGCGACAGCTCTGCTCTGAACTGATTAGAATCAGATATCGCTGG
GTTAGCAGCCATATCCGTTCAACCAGTATCTTTTGGGCCTTCATTTCGCA
CTTGTATAGATTGTAGTATTCCTTATAACGCATCTCTAACTTGACAAGGA
GACCCAGAACTTCTGCCTCAATCCCGTAGTGCTTCTTGAACTGCTTGGTT
AGATGCGGCTCCTCATCCTCCACCTTGTTTGATCTGTTATCCGATCCCCG
CTCCAACTTGCCCGCCACTATGGGTTCCAACATCAATTCAACTCTGTGTT
CCATGTCGACTGATAACT

BO14436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-PA 789 CG31910-RA 1..786 804..19 3780 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 905 CG31910-RA 81..866 804..19 3840 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6744702..6745107 19..424 1985 99.3 Plus
2L 23513712 2L 6745163..6745542 425..804 1855 99.2 Plus
Blast to na_te.dros performed 2015-02-11 09:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 2005..2063 460..403 112 67.8 Minus

BO14436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:55 Download gff for BO14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-PA 1..789 18..804 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:42 Download gff for BO14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-PA 1..789 18..804 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:14 Download gff for BO14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..875 13..804 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:11 Download gff for BO14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..875 13..804 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:11 Download gff for BO14436.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6744693..6745107 13..424 98 <- Plus
2L 6745163..6745542 425..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:14 Download gff for BO14436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6744693..6745107 13..424 98 <- Plus
arm_2L 6745163..6745542 425..804 99   Plus

BO14436.5prime Sequence

818 bp (779 high quality bases) assembled on 2006-05-29

> BO14436.5prime
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCAACCTGCCCCATCTTGAA
GCTGAAGTGTTCCCACCAAAACATAGCAAATTTAAAGTATGTCAGTCGCA
TCGCAAGCTTTCTAGACC

BO14436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-PA 789 CG31910-RA 1..786 17..802 3855 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 905 CG31910-RA 81..866 17..802 3885 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6744702..6745107 802..397 1985 99.3 Minus
2L 23513712 2L 6745163..6745542 396..17 1900 100 Minus
Blast to na_te.dros performed 2015-02-12 05:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 2005..2063 361..418 112 67.8 Plus

BO14436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:56 Download gff for BO14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-PA 1..789 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:43 Download gff for BO14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-PA 1..789 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:16 Download gff for BO14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..875 17..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:22 Download gff for BO14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..875 17..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:22 Download gff for BO14436.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6744693..6745107 397..808 98 <- Minus
2L 6745163..6745542 17..396 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:16 Download gff for BO14436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6744693..6745107 397..808 98 <- Minus
arm_2L 6745163..6745542 17..396 100   Minus

BO14436.complete Sequence

820 bp assembled on 2006-10-11

GenBank Submission: FJ633123

> BO14436.complete
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCAACCTGCCCCATCTTGAA
GCTGAAGTGTTCCCACCAAAACATAGCAAATTTAAAGTATGTCAGTCGCA
TCGCAAGCTTTCTAGACCAT

BO14436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 789 CG31910-PA 1..786 17..802 3885 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 905 CG31910-RA 81..866 17..802 3885 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6744702..6745107 802..397 1985 99.3 Minus
2L 23513712 2L 6745163..6745542 396..17 1900 100 Minus
Blast to na_te.dros performed 2014-11-27 17:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 2005..2063 361..418 112 67.8 Plus

BO14436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:11 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 1..789 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:17 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 68..862 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:49 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..866 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:11 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 68..862 17..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:41 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..866 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:41 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6744700..6745107 397..804 98 <- Minus
2L 6745163..6745542 17..396 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:49 Download gff for BO14436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6744700..6745107 397..804 98 <- Minus
arm_2L 6745163..6745542 17..396 100   Minus

BO14436.pep Sequence

Translation from 16 to 820

> BO14436.pep
MEHRVELMLEPIVAGKLERRSDNRSNKVEDEEPHLTKQLKKHYGIEAEVL
GLLVKLEMRYKEYYNLYKCEMKAQKILVERIWLLTQRYLILISSEQSCRY
PEVYTLSTEEAIINEYEEKLEVLRASNNKMKNTLLEINQQCKEFYAAYER
LDKAQETPFIMGDSHHRSIKYHKIMAVDIFNYLYATVLKLKCFMHQLDPV
NLESVEEYRDLLQNESAMEEFEEYLNNQFVYCKCIYPIPTCPILKLKCSH
QNIANLKYVSRIASFLDH

BO14436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-PA 262 CG31910-PA 1..262 1..262 1369 100 Plus
CG30391-PA 338 CG30391-PA 34..234 39..242 325 30.9 Plus
CG30393-PA 354 CG30393-PA 39..234 44..242 300 31.7 Plus