Clone BO14437 Report

Search the DGRC for BO14437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG3568-RA
Protein status:BO14437.pep: Imported from assembly
Sequenced Size:1558

Clone Sequence Records

BO14437.3prime Sequence

792 bp (707 high quality bases) assembled on 2006-05-29

> BO14437.3prime
ATGGTCTAGAAAGCTTGCCACCCTCAGTCGCCTAGCGTAGTCGCCTACAT
GGAGTAGTCCGTGTTCCACTGATGCAATGTGCAGATTGGCTCCGTTCATA
TAGTGCACATTAATGTGGGGATTTTGGAGTTCAGAGATTAAAGTGGAACA
GGCTGCTGCTGGATCCCCAGTGCTGATTAGCATATTCGCCCAAAATTCGT
TGCCAGGCAGGGCATTTCCATCCCAGGCGTATGTCACCACGGGCAACATG
TCCTCCGTTAGTTTGTCTCCGGGATTTCGGACCGAATTGCGAATGCGAAT
GCCACCCTGGGGATGTTTGTCCACGGGAATGATGGCTCCGTCATGCAAGC
TGCCCACACATGCCAAATGAAACCATGAGAAGTGTACCACTCCGATGTGG
CTTAGTCGTTCTCCAAGTGCCCGCAATCGTCCCTCAAAAGATTCAAGGAA
GGTGCGCTCCTGCTGTCTAGCTGCCTTCCAAACGCCCAGTCCGATGCCGA
CCACATGGATATAGGCGGGCTTACCAGCCTTAAATGCTCTGTCCTGTGCC
TCCAAGAGCAGGGTGTCGAAACTGATGGCATATCGCTTGCGCATTACCTG
GTGATCGAAGATGCCCTGAGAAACCTCTTCGAAACGCGTAGTATCATACG
GAGTGTCGGCGTAAATGAAGTCCCTGGGCTCCTCGTAGAACTCGCGCCAG
ATTCTGCGCAAATCTGATGCAGGTGTGACCGTCTCGCTGGATATCTGTTC
CAAATCGAAACCGTAGCCATTGGCCTCATTATTTTGGCTTTT

BO14437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-PA 1527 CG3568-RA 756..1519 787..24 3795 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-RA 1693 CG3568-RA 824..1592 792..24 3815 99.7 Minus
CG2909-RA 2018 CG2909-RA 1072..1210 586..448 195 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4543571..4544176 792..187 3000 99.7 Minus
X 23542271 X 4544233..4544396 187..24 820 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:51:17 has no hits.

BO14437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:57 Download gff for BO14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-PA 751..1527 15..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:44 Download gff for BO14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-PA 751..1527 15..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:54 Download gff for BO14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 824..1600 15..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:28 Download gff for BO14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 824..1600 15..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:28 Download gff for BO14437.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4543571..4544176 187..792 99 -> Minus
X 4544234..4544404 15..186 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:54 Download gff for BO14437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4437604..4438209 187..792 99 -> Minus
arm_X 4438267..4438437 15..186 97   Minus

BO14437.5prime Sequence

807 bp (745 high quality bases) assembled on 2006-05-29

> BO14437.5prime
GAAGTTATCACTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTC
CCAAATTGGCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAA
CGTACAAATCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATG
TGGCCAAATGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAG
CTATTTCGGAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTG
AAGGCACAGCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATC
CGCCTATCCGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCT
TAGAGCACAAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAG
GACATGACTGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGT
GTGGTTCTTTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTG
GTAACGAGGGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTC
ACTTTGACCTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCT
CTACGTGTCCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATG
GGGGTGAGGTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTG
ATTGGACTAATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCA
GGATATCATGATTACTAAAACCCAAAATACTGAGGCCAATGGCTACGGTT
TCGATTT

BO14437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-PA 1527 CG3568-RA 1..791 17..807 3955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-RA 1693 CG3568-RA 74..864 17..807 3955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4543175..4543611 371..807 2185 100 Plus
X 23542271 X 4542703..4542912 17..226 1050 100 Plus
X 23542271 X 4542976..4543123 225..372 740 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:43:58 has no hits.

BO14437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:57 Download gff for BO14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-PA 1..791 17..807 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:45 Download gff for BO14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-PA 1..791 17..807 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:39 Download gff for BO14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 72..864 13..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:19 Download gff for BO14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 72..864 13..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:19 Download gff for BO14437.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4542701..4542912 13..226 99 -> Plus
X 4542978..4543122 227..371 100 -> Plus
X 4543176..4543611 372..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:39 Download gff for BO14437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4436734..4436945 13..226 99 -> Plus
arm_X 4437011..4437155 227..371 100 -> Plus
arm_X 4437209..4437644 372..807 100   Plus

BO14437.complete Sequence

1558 bp assembled on 2008-08-14

GenBank Submission: FJ633124

> BO14437.complete
GAAGTTATCACTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTC
CCAAATTGGCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAA
CGTACAAATCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATG
TGGCCAAATGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAG
CTATTTCGGAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTG
AAGGCACAGCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATC
CGCCTATCCGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCT
TAGAGCACAAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAG
GACATGACTGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGT
GTGGTTCTTTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTG
GTAACGAGGGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTC
ACTTTGACCTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCT
CTACGTGTCCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATG
GGGGTGAGGTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTG
ATTGGACTAATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCA
GGATATCATGATTACTAAAACCCAAAATACTGAGGCCAATGGCTACGGTT
TCGATTTGGAACAGATATCCAGCGAGACGGTCACACCTGCATCAGATTTG
CGCAGAATCTGGCGCGAGTTCTACGAGGAGCCCAGGGACTTCATTTACGC
CGACACTCCGTATGATACTACGCGTTTCGAAGAGGTTTCTCAGGGCATCT
TCGATCACCAGGTAATGCGCAAGCGATATGCCATCAGTTTCGACACCCTG
CTCTTGGAGGCACAGGACAGAGCATTTAAGGCTGGTAAGCCCGCCTATAT
CCATGTGGTCGGCATCGGACTGGGCGTTTGGAAGGCAGCTAGACAGCAGG
AGCGCACCTTCCTTGAATCTTTTGAGGGACGATTGCGGGCACTTGGAGAA
CGACTAAGCCACATCGGAGTGGTACACTTCTCATGGTTTCATTTGGCATG
TGTGGGCAGCTTGCATGACGGAGCCATCATTCCCGTGGACAAACATCCCC
AGGGTGGCATTCGCATTCGCAATTCGGTCCGAAATCCCGGAGACAAACTA
ACGGAGGACATGTTGCCCGTGGTGACATACGCCTGGGATGGAAATGCCCT
GCCTGGCAACGAATTTTGGGCGAATATGCTAATCAGCACTGGGGATCCAG
CAGCAGCCTGTTCCACTTTAATCTCTGAACTCCAAAATCCCCACATTAAT
GTGCACTATATGAACGGAGCCAATCTGCACATTGCATCAGTGGAACACGG
ACTACTCCATGTAGGCGACTACGCTAGGCGACTGATTGTGGCAAGCTTTC
TAGACCAT

BO14437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-RA 1527 CG3568-PA 1..1524 17..1540 7620 100 Plus
CG2909-RA 1518 CG2909-PA 994..1056 1049..1111 180 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-RA 1693 CG3568-RA 74..1597 17..1540 7620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4543175..4544176 371..1372 5010 100 Plus
X 23542271 X 4542703..4542912 17..226 1050 100 Plus
X 23542271 X 4544233..4544401 1372..1540 845 100 Plus
X 23542271 X 4542976..4543123 225..372 740 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:33:16 has no hits.

BO14437.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:00 Download gff for BO14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 65..1593 13..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:59 Download gff for BO14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 74..1597 17..1542 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:51 Download gff for BO14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 67..1590 17..1542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:40 Download gff for BO14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG3568-RA 74..1597 17..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:40 Download gff for BO14437.complete
Subject Subject Range Query Range Percent Splice Strand
X 4542703..4542912 17..226 100 -> Plus
X 4542978..4543122 227..371 100 -> Plus
X 4544234..4544401 1373..1542 98   Plus
X 4543176..4544176 372..1372 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:59 Download gff for BO14437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4436736..4436945 17..226 100 -> Plus
arm_X 4437011..4437155 227..371 100 -> Plus
arm_X 4437209..4438209 372..1372 100 -> Plus
arm_X 4438267..4438434 1373..1542 98   Plus

BO14437.pep Sequence

Translation from 16 to 1558

> BO14437.pep
MRSFLYMLSQRPKLACLCGKSIIIWPGKRTNLPENAFTQRMLQECGQMAK
PDASVDLDNFKAISEQSPAEFGIDSCRVKAQPEDRSDRIREQIASAYPVI
HERTLLLFISFLEHKLTFGSEQEKAIYKDMTVVDLVQRLLAKRCVWFFGA
NDYYRTMQGNIGNEGFEAVGTPAEKEPLTLTSVLSYDEIKLSALLYVSCH
SEFINNGSRVNGGEVLQNKDTIEREGVVIGLIGARFERPDVMEYQDIMIT
KTQNTEANGYGFDLEQISSETVTPASDLRRIWREFYEEPRDFIYADTPYD
TTRFEEVSQGIFDHQVMRKRYAISFDTLLLEAQDRAFKAGKPAYIHVVGI
GLGVWKAARQQERTFLESFEGRLRALGERLSHIGVVHFSWFHLACVGSLH
DGAIIPVDKHPQGGIRIRNSVRNPGDKLTEDMLPVVTYAWDGNALPGNEF
WANMLISTGDPAAACSTLISELQNPHINVHYMNGANLHIASVEHGLLHVG
DYARRLIVASFLDH

BO14437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3568-PA 508 CG3568-PA 1..508 1..508 2664 100 Plus
CG2909-PA 505 CG2909-PA 11..498 24..507 1277 51.8 Plus