Clone Sequence Records
BO14437.3prime Sequence
792 bp (707 high quality bases) assembled on 2006-05-29
> BO14437.3prime
ATGGTCTAGAAAGCTTGCCACCCTCAGTCGCCTAGCGTAGTCGCCTACAT
GGAGTAGTCCGTGTTCCACTGATGCAATGTGCAGATTGGCTCCGTTCATA
TAGTGCACATTAATGTGGGGATTTTGGAGTTCAGAGATTAAAGTGGAACA
GGCTGCTGCTGGATCCCCAGTGCTGATTAGCATATTCGCCCAAAATTCGT
TGCCAGGCAGGGCATTTCCATCCCAGGCGTATGTCACCACGGGCAACATG
TCCTCCGTTAGTTTGTCTCCGGGATTTCGGACCGAATTGCGAATGCGAAT
GCCACCCTGGGGATGTTTGTCCACGGGAATGATGGCTCCGTCATGCAAGC
TGCCCACACATGCCAAATGAAACCATGAGAAGTGTACCACTCCGATGTGG
CTTAGTCGTTCTCCAAGTGCCCGCAATCGTCCCTCAAAAGATTCAAGGAA
GGTGCGCTCCTGCTGTCTAGCTGCCTTCCAAACGCCCAGTCCGATGCCGA
CCACATGGATATAGGCGGGCTTACCAGCCTTAAATGCTCTGTCCTGTGCC
TCCAAGAGCAGGGTGTCGAAACTGATGGCATATCGCTTGCGCATTACCTG
GTGATCGAAGATGCCCTGAGAAACCTCTTCGAAACGCGTAGTATCATACG
GAGTGTCGGCGTAAATGAAGTCCCTGGGCTCCTCGTAGAACTCGCGCCAG
ATTCTGCGCAAATCTGATGCAGGTGTGACCGTCTCGCTGGATATCTGTTC
CAAATCGAAACCGTAGCCATTGGCCTCATTATTTTGGCTTTT
BO14437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-PA | 1527 | CG3568-RA | 756..1519 | 787..24 | 3795 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1693 | CG3568-RA | 824..1592 | 792..24 | 3815 | 99.7 | Minus |
CG2909-RA | 2018 | CG2909-RA | 1072..1210 | 586..448 | 195 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4543571..4544176 | 792..187 | 3000 | 99.7 | Minus |
X | 23542271 | X | 4544233..4544396 | 187..24 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:51:17 has no hits.
BO14437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:57 Download gff for
BO14437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-PA | 751..1527 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:44 Download gff for
BO14437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-PA | 751..1527 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:53:54 Download gff for
BO14437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 824..1600 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:28 Download gff for
BO14437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 824..1600 | 15..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:28 Download gff for
BO14437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4543571..4544176 | 187..792 | 99 | -> | Minus |
X | 4544234..4544404 | 15..186 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:53:54 Download gff for
BO14437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4437604..4438209 | 187..792 | 99 | -> | Minus |
arm_X | 4438267..4438437 | 15..186 | 97 | | Minus |
BO14437.5prime Sequence
807 bp (745 high quality bases) assembled on 2006-05-29
> BO14437.5prime
GAAGTTATCACTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTC
CCAAATTGGCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAA
CGTACAAATCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATG
TGGCCAAATGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAG
CTATTTCGGAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTG
AAGGCACAGCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATC
CGCCTATCCGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCT
TAGAGCACAAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAG
GACATGACTGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGT
GTGGTTCTTTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTG
GTAACGAGGGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTC
ACTTTGACCTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCT
CTACGTGTCCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATG
GGGGTGAGGTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTG
ATTGGACTAATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCA
GGATATCATGATTACTAAAACCCAAAATACTGAGGCCAATGGCTACGGTT
TCGATTT
BO14437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-PA | 1527 | CG3568-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1693 | CG3568-RA | 74..864 | 17..807 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4543175..4543611 | 371..807 | 2185 | 100 | Plus |
X | 23542271 | X | 4542703..4542912 | 17..226 | 1050 | 100 | Plus |
X | 23542271 | X | 4542976..4543123 | 225..372 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:43:58 has no hits.
BO14437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:27:57 Download gff for
BO14437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-PA | 1..791 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:45 Download gff for
BO14437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-PA | 1..791 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:39 Download gff for
BO14437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 72..864 | 13..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:19 Download gff for
BO14437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 72..864 | 13..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:19 Download gff for
BO14437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4542701..4542912 | 13..226 | 99 | -> | Plus |
X | 4542978..4543122 | 227..371 | 100 | -> | Plus |
X | 4543176..4543611 | 372..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:39 Download gff for
BO14437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4436734..4436945 | 13..226 | 99 | -> | Plus |
arm_X | 4437011..4437155 | 227..371 | 100 | -> | Plus |
arm_X | 4437209..4437644 | 372..807 | 100 | | Plus |
BO14437.complete Sequence
1558 bp assembled on 2008-08-14
GenBank Submission: FJ633124
> BO14437.complete
GAAGTTATCACTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTC
CCAAATTGGCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAA
CGTACAAATCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATG
TGGCCAAATGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAG
CTATTTCGGAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTG
AAGGCACAGCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATC
CGCCTATCCGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCT
TAGAGCACAAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAG
GACATGACTGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGT
GTGGTTCTTTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTG
GTAACGAGGGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTC
ACTTTGACCTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCT
CTACGTGTCCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATG
GGGGTGAGGTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTG
ATTGGACTAATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCA
GGATATCATGATTACTAAAACCCAAAATACTGAGGCCAATGGCTACGGTT
TCGATTTGGAACAGATATCCAGCGAGACGGTCACACCTGCATCAGATTTG
CGCAGAATCTGGCGCGAGTTCTACGAGGAGCCCAGGGACTTCATTTACGC
CGACACTCCGTATGATACTACGCGTTTCGAAGAGGTTTCTCAGGGCATCT
TCGATCACCAGGTAATGCGCAAGCGATATGCCATCAGTTTCGACACCCTG
CTCTTGGAGGCACAGGACAGAGCATTTAAGGCTGGTAAGCCCGCCTATAT
CCATGTGGTCGGCATCGGACTGGGCGTTTGGAAGGCAGCTAGACAGCAGG
AGCGCACCTTCCTTGAATCTTTTGAGGGACGATTGCGGGCACTTGGAGAA
CGACTAAGCCACATCGGAGTGGTACACTTCTCATGGTTTCATTTGGCATG
TGTGGGCAGCTTGCATGACGGAGCCATCATTCCCGTGGACAAACATCCCC
AGGGTGGCATTCGCATTCGCAATTCGGTCCGAAATCCCGGAGACAAACTA
ACGGAGGACATGTTGCCCGTGGTGACATACGCCTGGGATGGAAATGCCCT
GCCTGGCAACGAATTTTGGGCGAATATGCTAATCAGCACTGGGGATCCAG
CAGCAGCCTGTTCCACTTTAATCTCTGAACTCCAAAATCCCCACATTAAT
GTGCACTATATGAACGGAGCCAATCTGCACATTGCATCAGTGGAACACGG
ACTACTCCATGTAGGCGACTACGCTAGGCGACTGATTGTGGCAAGCTTTC
TAGACCAT
BO14437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1527 | CG3568-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
CG2909-RA | 1518 | CG2909-PA | 994..1056 | 1049..1111 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1693 | CG3568-RA | 74..1597 | 17..1540 | 7620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4543175..4544176 | 371..1372 | 5010 | 100 | Plus |
X | 23542271 | X | 4542703..4542912 | 17..226 | 1050 | 100 | Plus |
X | 23542271 | X | 4544233..4544401 | 1372..1540 | 845 | 100 | Plus |
X | 23542271 | X | 4542976..4543123 | 225..372 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:33:16 has no hits.
BO14437.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:00 Download gff for
BO14437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 65..1593 | 13..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:59 Download gff for
BO14437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 74..1597 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:51 Download gff for
BO14437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 67..1590 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:40 Download gff for
BO14437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 74..1597 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:40 Download gff for
BO14437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4542703..4542912 | 17..226 | 100 | -> | Plus |
X | 4542978..4543122 | 227..371 | 100 | -> | Plus |
X | 4544234..4544401 | 1373..1542 | 98 | | Plus |
X | 4543176..4544176 | 372..1372 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:59 Download gff for
BO14437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4436736..4436945 | 17..226 | 100 | -> | Plus |
arm_X | 4437011..4437155 | 227..371 | 100 | -> | Plus |
arm_X | 4437209..4438209 | 372..1372 | 100 | -> | Plus |
arm_X | 4438267..4438434 | 1373..1542 | 98 | | Plus |
BO14437.pep Sequence
Translation from 16 to 1558
> BO14437.pep
MRSFLYMLSQRPKLACLCGKSIIIWPGKRTNLPENAFTQRMLQECGQMAK
PDASVDLDNFKAISEQSPAEFGIDSCRVKAQPEDRSDRIREQIASAYPVI
HERTLLLFISFLEHKLTFGSEQEKAIYKDMTVVDLVQRLLAKRCVWFFGA
NDYYRTMQGNIGNEGFEAVGTPAEKEPLTLTSVLSYDEIKLSALLYVSCH
SEFINNGSRVNGGEVLQNKDTIEREGVVIGLIGARFERPDVMEYQDIMIT
KTQNTEANGYGFDLEQISSETVTPASDLRRIWREFYEEPRDFIYADTPYD
TTRFEEVSQGIFDHQVMRKRYAISFDTLLLEAQDRAFKAGKPAYIHVVGI
GLGVWKAARQQERTFLESFEGRLRALGERLSHIGVVHFSWFHLACVGSLH
DGAIIPVDKHPQGGIRIRNSVRNPGDKLTEDMLPVVTYAWDGNALPGNEF
WANMLISTGDPAAACSTLISELQNPHINVHYMNGANLHIASVEHGLLHVG
DYARRLIVASFLDH
BO14437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-PA | 508 | CG3568-PA | 1..508 | 1..508 | 2664 | 100 | Plus |
CG2909-PA | 505 | CG2909-PA | 11..498 | 24..507 | 1277 | 51.8 | Plus |