Clone BO14439 Report

Search the DGRC for BO14439

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG2127-RA
Protein status:BO14439.pep: Imported from assembly
Sequenced Size:949

Clone Sequence Records

BO14439.3prime Sequence

817 bp (753 high quality bases) assembled on 2006-05-29

> BO14439.3prime
CTTTAGGGGGCGCCAAANGAATGGTCTAGAAAGCTTGCCGTCCCTTCAGA
CTTAAGGACTGCCCCCTTGCCACGGGCGATCCTTCGCCTCAGCTCCGCCC
ACATCTCGCAGGCCATGCCAACTCGAAGGCATAGGCACTCTGTAGGTGGT
GCGTTAGTGAGCTCCTCCCGCTTGCATTCTGAGAAGCTGGGATACGGCGC
CGGGCGCTTGGTACAGTCGGTAGGTCGGCGTTCTCGGTGGCAACTGGGCG
GAATACGGGCGGGCTTGCAGCAGGGAAGAGTCCAGCGCGGACAGGGTGAG
GAGTCCTCTGCCTTCTTGCACTCCATGGGATTAAGCATGGGCATCGTGGG
ACGGGCTGTGGCCACCACCGTCTTCCGCTGACGGCGGCAGGGCTTCGGAC
GCGGTCGCTTTGCGTGGATGCACACCTTCTTGGGCTTGATCACCAACCGG
GGGCACTCGTTCCACGTCACCTGGTACTGGCGGGCCTCTTTGTCCGATAT
GCGGTAGTGCTGGATGTCGTACCGCACTGGCACATCGCACTTTGGCACGT
ACTCGCAGTCGGGTATATACCACATGGACCTCATCTTTGCTGGCAGCTTT
GGCTTGTTGGACTTTTCCTTCTTGCGCTCTTCCTTCTTCTTGCGCTTACC
GCCCTTGACTGCATCGCAAATGGTGCCCTTGAACCGAGCAGGACCACAGC
CCTTGGAGGTCGATACCTGATCGCAATCCTTTGGCCGCCCGCAATCATCG
GCGGAAGACTGACTGCTGTAGTTGCGGCGTAACAGGTGCTGCCGGAGCAC
ACTGGAGCCAACGCAGT

BO14439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-PA 918 CG2127-RA 137..904 817..50 3740 99.4 Minus
CG2127-PB 870 CG2127-RB 89..856 817..50 3740 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RB 1640 CG2127-RB 200..967 817..50 3780 99.5 Minus
CG2127-RA 1695 CG2127-RA 255..1022 817..50 3780 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8369017..8369784 50..817 3780 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 18:31:36 has no hits.

BO14439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:00 Download gff for BO14439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-PA 137..911 41..817 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:49 Download gff for BO14439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-PB 89..863 41..817 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:54:03 Download gff for BO14439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 255..1029 41..817 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:17:36 Download gff for BO14439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 255..1029 41..817 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:17:36 Download gff for BO14439.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8369010..8369784 41..817 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:54:03 Download gff for BO14439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4256515..4257289 41..817 98   Plus

BO14439.5prime Sequence

879 bp (763 high quality bases) assembled on 2006-05-29

> BO14439.5prime
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTATCCCAGCTTCTCAGAATGCAAGC
GGGAGGAGCTCACTAACGCACCACCTACAGAGTGCCTATGCCTTCAAGTT
CCATGGCCTGCGAGATGTGGGCGGAGCTG

BO14439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-PA 918 CG2127-RA 1..836 17..852 4130 99.7 Plus
CG2127-PB 870 CG2127-RB 1..788 65..852 3890 99.7 Plus
CG2127-PA 918 CG2127-RA 836..864 851..879 145 100 Plus
CG2127-PB 870 CG2127-RB 788..816 851..879 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RA 1695 CG2127-RA 119..982 17..879 4265 99.7 Plus
CG2127-RB 1640 CG2127-RB 103..927 56..879 4070 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8369057..8369920 879..17 4240 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 08:11:55 has no hits.

BO14439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:02 Download gff for BO14439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-PA 1..864 17..879 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:50 Download gff for BO14439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-PA 1..864 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:57 Download gff for BO14439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..982 12..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:22 Download gff for BO14439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..982 12..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:22 Download gff for BO14439.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8369057..8369925 12..879 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:57 Download gff for BO14439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4256562..4257430 12..879 99   Minus

BO14439.complete Sequence

949 bp assembled on 2008-08-14

GenBank Submission: FJ633125

> BO14439.complete
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTATCCCAGCTTCTCAGAATGCAAGC
GGGAGGAGCTCACTAACGCACCACCTACAGAGTGCCTATGCCTTCGAGTT
CCCATGGCCTGCGAGATGTGGGCGGAGCTGAGGCGAAGGATCGCCCGTGG
CAAGGGGGCAGTCCTTAAGTGTGGCGAAACGGCAAGCTTTCTAGACCAT

BO14439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RA 918 CG2127-PA 1..915 17..931 4560 99.9 Plus
CG2127-RB 870 CG2127-PB 1..867 65..931 4320 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RA 1695 CG2127-RA 119..1033 17..931 4560 99.9 Plus
CG2127-RB 1640 CG2127-RB 103..978 56..931 4365 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8369006..8369920 931..17 4560 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 23:50:01 has no hits.

BO14439.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:37 Download gff for BO14439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..1038 12..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:20 Download gff for BO14439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 124..1033 22..933 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:44 Download gff for BO14439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 124..1033 22..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:17 Download gff for BO14439.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 124..1033 22..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:17 Download gff for BO14439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8369004..8369915 22..933 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:20 Download gff for BO14439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4256509..4257420 22..933 99   Minus

BO14439.pep Sequence

Translation from 16 to 949

> BO14439.pep
MLRMLRQKCRSLVDRSMPCLESLVNACSLFKVDWSKNLSQIKTPADCVGS
SVLRQHLLRRNYSSQSSADDCGRPKDCDQVSTSKGCGPARFKGTICDAVK
GGKRKKKEEPKKEKSNKPKLPAKMRSMWYIPDCEYVPKCDVPVRYDIQHY
RISDKEARQYQVTWNECPRLVIKPKKVCIHAKRPRPKPCRRQRKTVVATA
RPTMPMLNPMECKKAEDSSPCPRWTLPCCKPARIPPSCHRERRPTDCTKR
PAPYPSFSECKREELTNAPPTECLCLRVPMACEMWAELRRRIARGKGAVL
KCGETASFLDH

BO14439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-PA 305 CG2127-PA 1..305 1..305 1688 100 Plus
CG2127-PB 289 CG2127-PB 1..289 17..305 1609 100 Plus
CG33340-PA 229 CG33340-PA 23..224 80..291 338 38 Plus
CG8701-PA 246 CG8701-PA 36..231 74..290 338 42.5 Plus
CG12860-PA 316 CG12860-PA 66..304 59..292 274 31 Plus