Clone Sequence Records
BO14439.3prime Sequence
817 bp (753 high quality bases) assembled on 2006-05-29
> BO14439.3prime
CTTTAGGGGGCGCCAAANGAATGGTCTAGAAAGCTTGCCGTCCCTTCAGA
CTTAAGGACTGCCCCCTTGCCACGGGCGATCCTTCGCCTCAGCTCCGCCC
ACATCTCGCAGGCCATGCCAACTCGAAGGCATAGGCACTCTGTAGGTGGT
GCGTTAGTGAGCTCCTCCCGCTTGCATTCTGAGAAGCTGGGATACGGCGC
CGGGCGCTTGGTACAGTCGGTAGGTCGGCGTTCTCGGTGGCAACTGGGCG
GAATACGGGCGGGCTTGCAGCAGGGAAGAGTCCAGCGCGGACAGGGTGAG
GAGTCCTCTGCCTTCTTGCACTCCATGGGATTAAGCATGGGCATCGTGGG
ACGGGCTGTGGCCACCACCGTCTTCCGCTGACGGCGGCAGGGCTTCGGAC
GCGGTCGCTTTGCGTGGATGCACACCTTCTTGGGCTTGATCACCAACCGG
GGGCACTCGTTCCACGTCACCTGGTACTGGCGGGCCTCTTTGTCCGATAT
GCGGTAGTGCTGGATGTCGTACCGCACTGGCACATCGCACTTTGGCACGT
ACTCGCAGTCGGGTATATACCACATGGACCTCATCTTTGCTGGCAGCTTT
GGCTTGTTGGACTTTTCCTTCTTGCGCTCTTCCTTCTTCTTGCGCTTACC
GCCCTTGACTGCATCGCAAATGGTGCCCTTGAACCGAGCAGGACCACAGC
CCTTGGAGGTCGATACCTGATCGCAATCCTTTGGCCGCCCGCAATCATCG
GCGGAAGACTGACTGCTGTAGTTGCGGCGTAACAGGTGCTGCCGGAGCAC
ACTGGAGCCAACGCAGT
BO14439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-PA | 918 | CG2127-RA | 137..904 | 817..50 | 3740 | 99.4 | Minus |
CG2127-PB | 870 | CG2127-RB | 89..856 | 817..50 | 3740 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RB | 1640 | CG2127-RB | 200..967 | 817..50 | 3780 | 99.5 | Minus |
CG2127-RA | 1695 | CG2127-RA | 255..1022 | 817..50 | 3780 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8369017..8369784 | 50..817 | 3780 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:31:36 has no hits.
BO14439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:00 Download gff for
BO14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-PA | 137..911 | 41..817 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:49 Download gff for
BO14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-PB | 89..863 | 41..817 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:54:03 Download gff for
BO14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 255..1029 | 41..817 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:17:36 Download gff for
BO14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 255..1029 | 41..817 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:17:36 Download gff for
BO14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8369010..8369784 | 41..817 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:54:03 Download gff for
BO14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4256515..4257289 | 41..817 | 98 | | Plus |
BO14439.5prime Sequence
879 bp (763 high quality bases) assembled on 2006-05-29
> BO14439.5prime
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTATCCCAGCTTCTCAGAATGCAAGC
GGGAGGAGCTCACTAACGCACCACCTACAGAGTGCCTATGCCTTCAAGTT
CCATGGCCTGCGAGATGTGGGCGGAGCTG
BO14439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-PA | 918 | CG2127-RA | 1..836 | 17..852 | 4130 | 99.7 | Plus |
CG2127-PB | 870 | CG2127-RB | 1..788 | 65..852 | 3890 | 99.7 | Plus |
CG2127-PA | 918 | CG2127-RA | 836..864 | 851..879 | 145 | 100 | Plus |
CG2127-PB | 870 | CG2127-RB | 788..816 | 851..879 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RA | 1695 | CG2127-RA | 119..982 | 17..879 | 4265 | 99.7 | Plus |
CG2127-RB | 1640 | CG2127-RB | 103..927 | 56..879 | 4070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8369057..8369920 | 879..17 | 4240 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:11:55 has no hits.
BO14439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:02 Download gff for
BO14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:50 Download gff for
BO14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:57 Download gff for
BO14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..982 | 12..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:22 Download gff for
BO14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..982 | 12..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:22 Download gff for
BO14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8369057..8369925 | 12..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:57 Download gff for
BO14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4256562..4257430 | 12..879 | 99 | | Minus |
BO14439.complete Sequence
949 bp assembled on 2008-08-14
GenBank Submission: FJ633125
> BO14439.complete
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTATCCCAGCTTCTCAGAATGCAAGC
GGGAGGAGCTCACTAACGCACCACCTACAGAGTGCCTATGCCTTCGAGTT
CCCATGGCCTGCGAGATGTGGGCGGAGCTGAGGCGAAGGATCGCCCGTGG
CAAGGGGGCAGTCCTTAAGTGTGGCGAAACGGCAAGCTTTCTAGACCAT
BO14439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RA | 918 | CG2127-PA | 1..915 | 17..931 | 4560 | 99.9 | Plus |
CG2127-RB | 870 | CG2127-PB | 1..867 | 65..931 | 4320 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RA | 1695 | CG2127-RA | 119..1033 | 17..931 | 4560 | 99.9 | Plus |
CG2127-RB | 1640 | CG2127-RB | 103..978 | 56..931 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8369006..8369920 | 931..17 | 4560 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:50:01 has no hits.
BO14439.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:37 Download gff for
BO14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..1038 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:20 Download gff for
BO14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 124..1033 | 22..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:44 Download gff for
BO14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 124..1033 | 22..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:17 Download gff for
BO14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 124..1033 | 22..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:17 Download gff for
BO14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8369004..8369915 | 22..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:20 Download gff for
BO14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4256509..4257420 | 22..933 | 99 | | Minus |
BO14439.pep Sequence
Translation from 16 to 949
> BO14439.pep
MLRMLRQKCRSLVDRSMPCLESLVNACSLFKVDWSKNLSQIKTPADCVGS
SVLRQHLLRRNYSSQSSADDCGRPKDCDQVSTSKGCGPARFKGTICDAVK
GGKRKKKEEPKKEKSNKPKLPAKMRSMWYIPDCEYVPKCDVPVRYDIQHY
RISDKEARQYQVTWNECPRLVIKPKKVCIHAKRPRPKPCRRQRKTVVATA
RPTMPMLNPMECKKAEDSSPCPRWTLPCCKPARIPPSCHRERRPTDCTKR
PAPYPSFSECKREELTNAPPTECLCLRVPMACEMWAELRRRIARGKGAVL
KCGETASFLDH
BO14439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-PA | 305 | CG2127-PA | 1..305 | 1..305 | 1688 | 100 | Plus |
CG2127-PB | 289 | CG2127-PB | 1..289 | 17..305 | 1609 | 100 | Plus |
CG33340-PA | 229 | CG33340-PA | 23..224 | 80..291 | 338 | 38 | Plus |
CG8701-PA | 246 | CG8701-PA | 36..231 | 74..290 | 338 | 42.5 | Plus |
CG12860-PA | 316 | CG12860-PA | 66..304 | 59..292 | 274 | 31 | Plus |