Clone Sequence Records
BO14440.3prime Sequence
879 bp (811 high quality bases) assembled on 2006-05-29
> BO14440.3prime
ATGGTCTAGAAAGCTTGCGTCAAATATGCAGACGAAGATGCGGAGACAGT
TCATTCCCACCTTCTCCCAGCATCCATCCTCCGTGGGCCGACCCTCGTGG
GCCAGCCGCATCTTCTTGGGATAGTTCTTCGGACTGCTCCGGTCGCTCAG
GTGGACGGGCATCCGGGCGTATTCGGCACGCGGCTGGCGGAACTTCTCCA
GCAGCTCCGCCTGCTGATCGGTGAGGTTCTTTAGCTTTTTGCCATCGAGG
GCGTCGGTGATAAGAGATATCTCAGTGGGTGGCAGTAGCTCCAGGCGTTC
GCAGCATCGCCGGAATTCGCTGGCGGTCATCCGCAAGTAACGAGGTGTGA
GGCATAGTGGACCGAGGACAGTGCGACGGTTCTCCGGCGTGGCATCGATA
TGCTTGCGGGCGCACTCCGCCAGACTCCACGTGGCCAGGCACTCGAACAG
AGTGACCTCCGACCTGAGCTGCAAGGTATCCCTCTTGACCAGCGTCTCCA
GCTCCTCGAACCTGAGATCACTGATCTCCGGCATCGAAAGCTGCAGCTCT
GCGTGCATATCGATCAGCTGGAGCGTGTTGTGCAGCAGCGCCACGCCGTA
ATCTTCGGTGGTAAAGGGATTTGGGTTAGGAATGAGGTTCTGCTGGGCTC
CATCGCCCTCCGCTCCGTTTTCGGTGGACTGAGAGGCCTTGGCAGCCGCC
AGCTGCTTGGCCGCCGCCTTCGCCTTGGTCGCCTTCTTCCTGGCCAGCTG
CTGGCCCGTCTCCTGGGTGGTGATCACCGTTTGGTGCTGGTTGGTCAGTG
CGATGCCCTGGTAGAACCACAGCGCCTTGAAGATGTCCAGTGCCGTGGCG
CTCGAGATTCTGAGATTCAAGTCGCGAAT
BO14440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-PA | 1614 | CG8398-RA | 764..1611 | 866..19 | 4215 | 99.8 | Minus |
| CG8398-PB | 1308 | CG8398-RB | 458..1305 | 866..19 | 4215 | 99.8 | Minus |
| CG8398-PC | 1308 | CG8398-RC | 458..1305 | 866..19 | 4215 | 99.8 | Minus |
| CG8398-PD | 1308 | CG8398-RD | 458..1305 | 866..19 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RE | 1911 | CG8398-RE | 862..1722 | 879..19 | 4245 | 99.7 | Minus |
| CG8398-RD | 2094 | CG8398-RD | 1045..1905 | 879..19 | 4245 | 99.7 | Minus |
| CG8398-RC | 1850 | CG8398-RC | 801..1661 | 879..19 | 4245 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6616679..6617316 | 879..242 | 3115 | 99.2 | Minus |
| 3L | 28110227 | 3L | 6617767..6617991 | 243..19 | 1125 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 1169..1195 | 206..180 | 108 | 88.9 | Minus |
BO14440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:03 Download gff for
BO14440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-PC | 445..1308 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:51 Download gff for
BO14440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-PD | 445..1308 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:32:49 Download gff for
BO14440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RC | 801..1661 | 19..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:26 Download gff for
BO14440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RC | 801..1661 | 19..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:26 Download gff for
BO14440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6616679..6617315 | 243..879 | 99 | -> | Minus |
| 3L | 6617768..6617991 | 19..242 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:32:49 Download gff for
BO14440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6609779..6610415 | 243..879 | 99 | -> | Minus |
| arm_3L | 6610868..6611091 | 19..242 | 100 | | Minus |
BO14440.5prime Sequence
864 bp (852 high quality bases) assembled on 2006-05-29
> BO14440.5prime
GAAGTTATCAGTCGACATGGACCAGTATGGTGGCAACGCCAGCCCGGGAA
ATTTGTTCTCCAGCTCCATCACTGCCTTTCACGACAAGGACAGCCTAGAG
CCACGTCCTGGTAACAAATACAAACCGCGTCGCTTCAGCGCCCATCTGGA
GGAGCATCTGGTCAAGGAAAAGCGTATCACCAAATTCCCTCTGGTGGGCG
CCCTGGTCCACAAGGCACTGCGGCGTCGGGAGGAGGCAGAGGACGAGAAG
GTGCAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAACAACAA
CAACGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGGACCCG
ATGGCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTGCGCCC
CCCGCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAACATATA
CACAGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGTGGTCA
ACGGGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTACTCGAG
CGGAGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGCGGTCG
CAAGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGACTTCG
AGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCAC
AAGCACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTTCCAGA
TCTGATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAGCGCCA
CGGCACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCGCACTG
ACCAACCAGCACCA
BO14440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-PA | 1614 | CG8398-RA | 1..848 | 17..864 | 4165 | 99.6 | Plus |
| CG8398-PB | 1308 | CG8398-RB | 1..542 | 323..864 | 2685 | 99.8 | Plus |
| CG8398-PC | 1308 | CG8398-RC | 1..542 | 323..864 | 2685 | 99.8 | Plus |
| CG8398-PD | 1308 | CG8398-RD | 1..542 | 323..864 | 2685 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 2878 | CG8398-RA | 143..993 | 14..864 | 4210 | 99.6 | Plus |
| CG8398-RD | 2094 | CG8398-RD | 333..1142 | 55..864 | 4005 | 99.6 | Plus |
| CG8398-RE | 1911 | CG8398-RE | 151..959 | 56..864 | 4000 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6615897..6616600 | 55..758 | 3475 | 99.6 | Plus |
| 3L | 28110227 | 3L | 6616666..6616776 | 754..864 | 540 | 99.1 | Plus |
| 3L | 28110227 | 3L | 6609467..6609508 | 14..55 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:58:20 has no hits.
BO14440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:04 Download gff for
BO14440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:53 Download gff for
BO14440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:45 Download gff for
BO14440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 136..992 | 6..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:50:42 Download gff for
BO14440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 136..992 | 6..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:50:42 Download gff for
BO14440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6609460..6609508 | 6..55 | 92 | -> | Plus |
| 3L | 6615898..6616596 | 56..754 | 99 | -> | Plus |
| 3L | 6616667..6616775 | 755..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:45 Download gff for
BO14440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6602560..6602608 | 6..55 | 92 | -> | Plus |
| arm_3L | 6608998..6609696 | 56..754 | 99 | -> | Plus |
| arm_3L | 6609767..6609875 | 755..863 | 99 | | Plus |
BO14440.complete Sequence
1645 bp assembled on 2006-10-11
GenBank Submission: FJ633126
> BO14440.complete
GAAGTTATCAGTCGACATGGACCAGTATGGTGGCAACGCCAGCCCGGGAA
ATTTGTTCTCCAGCTCCATCACTGCCTTTCACGACAAGGACAGCCTAGAG
CCACGTCCTGGTAACAAATACAAACCGCGTCGCTTCAGCGCCCATCTGGA
GGAGCATCTGGTCAAGGAAAAGCGTATCACCAAATTCCCTCTGGTGGGCG
CCCTGGTCCACAAGGCACTGCGGCGTCGGGAGGAGGCAGAGGACGAGAAG
GTGCAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAACAACAA
CAACGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGGACCCG
ATGGCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTGCGCCC
CCCGCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAACATATA
CACAGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGTGGTCA
ACGGGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTACTCGAG
CGGAGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGCGGTCG
CAAGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGACTTCG
AGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCAC
AAGCACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTTCCAGA
TCTGATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAGCGCCA
CGGCACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCGCACTG
ACCAACCAGCACCAAACGGTGATCACCACCCAGGAGACGGGCCAGCAGCT
GGCCAGGAAGAAGGCGACCAAGGCGAAGGCGGCGGCCAAGCAGCTGGCGG
CTGCCAAGGCCTCTCAGTCCACCGAAAACGGAGCGGAGGGCGATGGAGCC
CAGCAGAACCTCATTCCTAACCCAAATCCCTTTACCACCGAAGATTACGG
CGTGGCGCTGCTGCACAACACGCTCCAGCTGATCGATATGCACGCAGAGC
TGCAGCTTTCGATGCCGGAGATCAGTGATCTCAGGTTCGAGGAGCTGGAG
ACGCTGGTCAAGAGGGATACCTTGCAGCTCAGGTCGGAGGTCACTCTGTT
CGAGTGCCTGGCCACGTGGAGTCTGGCGGAGTGCGCCCGCAAGCATATCG
ATGCCACGCCGGAGAACCGTCGCACTGTCCTCGGTCCACTATGCCTCACA
CCTCGTTACTTGCGGATGACCGCCAGCGAATTCCGGCGATGCTGCGAACG
CCTGGAGCTACTGCCACCCACTGAGATATCTCTTATCACCGACGCCCTCG
ATGGCAAAAAGCTAAAGAACCTCACCGATCAGCAGGCGGAGCTGCTGGAG
AAGTTCCGCCAGCCGCGTGCCGAATACGCCCGGATGCCCGTCCACCTGAG
CGACCGGAGCAGTCCGAAGAACTATCCCAAGAAGATGCGGCTGGCCCACG
AGGGTCGGCCCACGGAGGATGGATGCTGGGAGAAGGTGGGAATGAACTGT
CTCCGCATCTTCGTCTGCATATTTGACGCAAGCTTTCTAGACCAT
BO14440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 1614 | CG8398-PA | 1..1611 | 17..1627 | 8010 | 99.8 | Plus |
| CG8398-RE | 1308 | CG8398-PE | 1..1305 | 323..1627 | 6510 | 99.9 | Plus |
| CG8398-RD | 1308 | CG8398-PD | 1..1305 | 323..1627 | 6510 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 2878 | CG8398-RA | 143..1756 | 14..1627 | 8025 | 99.8 | Plus |
| CG8398-RD | 2094 | CG8398-RD | 333..1905 | 55..1627 | 7820 | 99.8 | Plus |
| CG8398-RE | 1911 | CG8398-RE | 151..1722 | 56..1627 | 7815 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6615897..6616600 | 55..758 | 3475 | 99.6 | Plus |
| 3L | 28110227 | 3L | 6616666..6617316 | 754..1404 | 3240 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6617767..6617991 | 1403..1627 | 1125 | 100 | Plus |
| 3L | 28110227 | 3L | 6609467..6609508 | 14..55 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:31 has no hits.
BO14440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:37:14 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 1..1614 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:20 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 136..1756 | 6..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:48 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 146..1756 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:37:15 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 136..1756 | 6..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:21 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 146..1756 | 17..1629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:21 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6609470..6609508 | 17..55 | 100 | -> | Plus |
| 3L | 6615898..6616596 | 56..754 | 99 | -> | Plus |
| 3L | 6616667..6617315 | 755..1403 | 99 | -> | Plus |
| 3L | 6617768..6617991 | 1404..1629 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:48 Download gff for
BO14440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6602570..6602608 | 17..55 | 100 | -> | Plus |
| arm_3L | 6608998..6609696 | 56..754 | 99 | -> | Plus |
| arm_3L | 6609767..6610415 | 755..1403 | 99 | -> | Plus |
| arm_3L | 6610868..6611091 | 1404..1629 | 99 | | Plus |
BO14440.pep Sequence
Translation from 16 to 1645
> BO14440.pep
MDQYGGNASPGNLFSSSITAFHDKDSLEPRPGNKYKPRRFSAHLEEHLVK
EKRITKFPLVGALVHKALRRREEAEDEKVQITGPEDNQHQQNNNNNDWEP
NRMVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPI
IVNPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNH
FQILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYC
IRELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKA
TKAKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLH
NTLQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLAT
WSLAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLP
PTEISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSP
KNYPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFDASFLDH
BO14440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-PA | 537 | CG8398-PA | 1..537 | 1..537 | 2821 | 99.8 | Plus |
| CG8398-PE | 435 | CG8398-PE | 1..435 | 103..537 | 2277 | 100 | Plus |
| CG8398-PD | 435 | CG8398-PD | 1..435 | 103..537 | 2277 | 100 | Plus |
| CG8398-PC | 435 | CG8398-PC | 1..435 | 103..537 | 2277 | 100 | Plus |
