Clone Sequence Records
BO14441.3prime Sequence
782 bp (736 high quality bases) assembled on 2006-05-29
> BO14441.3prime
ATGGTCTAGAAAGCTTGCCAGGTTTTCAGTTGGACACTTGAGCGGGGCCG
TGACCGACTTGCTGCAGGACACAAACTCCTTGCTGGGCTGCACACAGCTT
TTCTCGCGATTGTAGATGCCCAGAAAGGCGCGGCAATTGGCGCAGTACAG
GTACTCATTGTTGTCCGCGGACATGAGGCAGGGCAGGAAGCACAGAGGCC
AGCAGGAGACCACCCAGGCGGCACAGCAGCCGTTGTTCGAGATCTCAGTG
GCAGCCTTGATAAGCGGCCGCCTGCTGGTCGCGCAGCACGGACAAAAGAT
GCGCCCCTCCGCCGGTGCCCAGCGTTCGATGGAGGCGCGATAGCATTTCC
TCCGATGCGACGTCGAGTTCTCCAATGGACGTGAACATGGACATGGGGAG
CTGGGCTTCTCGGTTTTGTAGGAGGCGGCTTCACTGACGGCAGCAGGGTC
ACCGGCGACAGATCCACCACTGCGACCATAATTCTTCTTTTTGGCCATAT
ATTTCTCTGCCTTTTCGGCCATCTGGGACTCGGACAGACCCGTCATCTTG
CTAATCTTCGAGAGCCGCTCCTCACTGATGCCGTGATCCGCGGCCAGCTT
GTGCAGATTCTTGATTTTATCCGTGGTCACTGCGTATATCTCCGGATGAT
CCTGTTGGATGTGTCGCACCAGTTCACTGGTGTCGTAGCGGGAGCAACGG
ATCACCTTCATGCAGTGCAAACAGCGCAGTGATTGCGTACCACTTGGTTT
CGGATTTGTCTGGGACATGCCGACTGATAACT
BO14441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-PA | 753 | CG15708-RA | 1..750 | 768..19 | 3725 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 99..849 | 769..19 | 3740 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241030..16241511 | 19..500 | 2410 | 100 | Plus |
| 2R | 25286936 | 2R | 16241568..16241836 | 501..769 | 1330 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:07:46 has no hits.
BO14441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:05 Download gff for
BO14441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-PA | 1..753 | 16..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:54 Download gff for
BO14441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-PA | 1..753 | 16..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:28 Download gff for
BO14441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 10..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:50 Download gff for
BO14441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 10..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:50 Download gff for
BO14441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241018..16241511 | 10..500 | 99 | <- | Plus |
| 2R | 16241568..16241836 | 501..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:28 Download gff for
BO14441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128523..12129016 | 10..500 | 99 | <- | Plus |
| arm_2R | 12129073..12129341 | 501..769 | 99 | | Plus |
BO14441.5prime Sequence
782 bp (770 high quality bases) assembled on 2006-05-29
> BO14441.5prime
GAAGTTATCAGTCGACATGTCCCAGACAAATCCGAAACCAAGTGATACGC
AATCACTGCGCTGTTTGCACTGCATGAAGGTGATCCGTTGCTCCCGCTAC
GACACCAGTGAACTGGTGCGACACATCCAACAGGATCATCCGGAGATATA
CGCAGTGACCACGGATAAAATCAAGAATCTGCACAAGCTGGCCGCGGATC
ACGGCATCAGTGAGGAGCGGCTCTCGAAGATTAGCAAGATGACGGGTCTG
TCCGAGTCCCAGATGGCCGAAAAGGCAGAGAAATATATGGCCAAAAAGAA
GAATTATGGTCGCAGTGGTGGATCTGTCGCCGGTGACCCTGCTGCCGTCA
GTGAAGCCGCCTCCTACAAAACCGAGAAGCCCAGCTCCCCATGTCCATGT
TCACGTCCATTGGAGAACTCGACGTCGCATCGGAGGAAATGCTATCGCGC
CTCCATCGAACGCTGGGCACCGGCGGAGGGGCGCATCTTTTGTCCGTGCT
GCGCGACCAGCAGGCGGCCGCTTATCAAGGCTGCCACTGAGATCTCGAAC
AACGGCTGCTGTGCCGCCTGGGTGGTCTCCTGCTGGCCTCTGTGCTTCCT
GCCCTGCCTCATGTCCGCGGACAACAATGAGTACCTGTACTGCGCCAATT
GCCGCGCCTTTCTGGGCATCTACAATCGCGAGAAAAGCTGTGTGCAGCCC
AGCAAGGAGTTTGTGTCCTGCAGCAAGTCGGTCACGGCCCCGCTCAAGTG
TCCAACTGAAAACCTGGCAAGCTTTCTAGACC
BO14441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-PA | 753 | CG15708-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 99..849 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241030..16241511 | 766..285 | 2410 | 100 | Minus |
| 2R | 25286936 | 2R | 16241568..16241836 | 284..16 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:22:13 has no hits.
BO14441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:06 Download gff for
BO14441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:57 Download gff for
BO14441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:43 Download gff for
BO14441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 16..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:39 Download gff for
BO14441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 16..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:39 Download gff for
BO14441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241018..16241511 | 285..775 | 99 | <- | Minus |
| 2R | 16241568..16241836 | 16..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:43 Download gff for
BO14441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128523..12129016 | 285..775 | 99 | <- | Minus |
| arm_2R | 12129073..12129341 | 16..284 | 100 | | Minus |
BO14441.complete Sequence
784 bp assembled on 2006-10-11
GenBank Submission: FJ633127
> BO14441.complete
GAAGTTATCAGTCGACATGTCCCAGACAAATCCGAAACCAAGTGATACGC
AATCACTGCGCTGTTTGCACTGCATGAAGGTGATCCGTTGCTCCCGCTAC
GACACCAGTGAACTGGTGCGACACATCCAACAGGATCATCCGGAGATATA
CGCAGTGACCACGGATAAAATCAAGAATCTGCACAAGCTGGCCGCGGATC
ACGGCATCAGTGAGGAGCGGCTCTCGAAGATTAGCAAGATGACGGGTCTG
TCCGAGTCCCAGATGGCCGAAAAGGCAGAGAAATATATGGCCAAAAAGAA
GAATTATGGTCGCAGTGGTGGATCTGTCGCCGGTGACCCTGCTGCCGTCA
GTGAAGCCGCCTCCTACAAAACCGAGAAGCCCAGCTCCCCATGTCCATGT
TCACGTCCATTGGAGAACTCGACGTCGCATCGGAGGAAATGCTATCGCGC
CTCCATCGAACGCTGGGCACCGGCGGAGGGGCGCATCTTTTGTCCGTGCT
GCGCGACCAGCAGGCGGCCGCTTATCAAGGCTGCCACTGAGATCTCGAAC
AACGGCTGCTGTGCCGCCTGGGTGGTCTCCTGCTGGCCTCTGTGCTTCCT
GCCCTGCCTCATGTCCGCGGACAACAATGAGTACCTGTACTGCGCCAATT
GCCGCGCCTTTCTGGGCATCTACAATCGCGAGAAAAGCTGTGTGCAGCCC
AGCAAGGAGTTTGTGTCCTGCAGCAAGTCGGTCACGGCCCCGCTCAAGTG
TCCAACTGAAAACCTGGCAAGCTTTCTAGACCAT
BO14441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 753 | CG15708-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 99..849 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241030..16241511 | 766..285 | 2410 | 100 | Minus |
| 2R | 25286936 | 2R | 16241568..16241836 | 284..16 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:24 has no hits.
BO14441.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:12 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:19 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 16..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:06 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 100..849 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:13 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..861 | 16..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:09 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 100..849 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:09 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241027..16241511 | 285..768 | 99 | <- | Minus |
| 2R | 16241568..16241835 | 17..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:06 Download gff for
BO14441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128532..12129016 | 285..768 | 99 | <- | Minus |
| arm_2R | 12129073..12129340 | 17..284 | 100 | | Minus |
BO14441.pep Sequence
Translation from 16 to 784
> BO14441.pep
MSQTNPKPSDTQSLRCLHCMKVIRCSRYDTSELVRHIQQDHPEIYAVTTD
KIKNLHKLAADHGISEERLSKISKMTGLSESQMAEKAEKYMAKKKNYGRS
GGSVAGDPAAVSEAASYKTEKPSSPCPCSRPLENSTSHRRKCYRASIERW
APAEGRIFCPCCATSRRPLIKAATEISNNGCCAAWVVSCWPLCFLPCLMS
ADNNEYLYCANCRAFLGIYNREKSCVQPSKEFVSCSKSVTAPLKCPTENL
ASFLDH
BO14441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-PA | 250 | CG15708-PA | 1..250 | 1..250 | 1354 | 100 | Plus |
| CG12684-PA | 231 | CG12684-PA | 10..228 | 12..230 | 379 | 33.5 | Plus |
