Clone Sequence Records
BO14443.3prime Sequence
737 bp (730 high quality bases) assembled on 2006-05-29
> BO14443.3prime
TAACAATAAAAGAGGGNNAAANGAANGGNNNANAAAGNNNGNAAACCTTA
AAGAATTNNNGNGATNATTGGNAGANAGNTGGNNGNNNTNTAAGGNANTG
ANAATNTNNTGANNGGATGCCCCGGAAGGGAGANTTTTGTTGGGNTTNGG
GTTGGGTGGNTAGGGATNTGTGNNAAGTTAAATTTAATAGTGATNATTAT
TGANTGTAGGATGAGGATAGGTATAGGGATNTTGGNTTAATGGTTGNAGT
TNATGGAATTATTNAGAATAGTTATTNTATTTATTGGNATTGGTNTGAAA
TAAAGATGAGTTTTGGAGNTGGATATTATGNAGGTTGAAAAGTATTTTTT
TTTAGGATGAAATGGATGTGTTAATTGTGGGATTTGAATTAGGAAATGGT
TTATANTGATAAATGGGTTAGAANANAGAGATAGAAGGATGTTGAAGATA
ATTATTGGATTAATTNATTGGGGTAAAGAAGTGAATTATAGTGTTTGAAT
TTANNAGGTNATTGTTGTAATGGGAGGATGTATNGTAGTNATTATTAATT
TGGTAGAGAATTATTGGATTNTTGATGATNTTAAAGAAGAGATTNAAGGA
ATTGGATTTTGGAGNGGGGCATAATTAGGAAAAATAAANAGATAGGNNAT
GGGGTTAGGAAAGAGGAATATTTTGAATAATGGANATGTNGAATGATAAN
TTAGTATTATGTATGTTATANGAAGTTATTGGGATGA
BO14443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:22:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5217-RA | 974 | CG5217-RA | 178..662 | 619..135 | 764 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19247364..19247633 | 135..404 | 477 | 76.7 | Plus |
| 3R | 32079331 | 3R | 19247811..19247959 | 471..619 | 301 | 78.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:31:51 has no hits.
BO14443.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-31 02:54:07 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 20:18:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 20:18:47 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-31 02:54:07 has no hits.
BO14443.5prime Sequence
677 bp (676 high quality bases) assembled on 2006-05-29
> BO14443.5prime
GAAGTTATCACTCGACATGTCCAGTCTGCAAGATATTCCGCTTGCCGACC
CCGAGGGCCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCC
AATTCCTTGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGA
CCAAGTGGAGGATGACGACGAGACATCCTCCCAGGACAACAAGGACCTGG
GAAAGTCAAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAAT
AAGGATGTTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGA
TAAGCCGTTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCT
ACTGGAAGATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCT
TTAGGGCAGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCA
TGAACTGCAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAG
TCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCC
AACCCGAAGCCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGAT
TGTCAGTGCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATG
CGGCTTCCATTGCAAGCTTTCTAGACC
BO14443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5217-PA | 648 | CG5217-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5217-RA | 974 | CG5217-RA | 110..754 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19247272..19247679 | 661..254 | 2040 | 100 | Minus |
| 3R | 32079331 | 3R | 19247790..19248027 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:07:44 has no hits.
BO14443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:09 Download gff for
BO14443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-PA | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:01 Download gff for
BO14443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-PA | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:35 Download gff for
BO14443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-RA | 119..767 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:32 Download gff for
BO14443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-RA | 110..758 | 17..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:32 Download gff for
BO14443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19247268..19247678 | 255..667 | 99 | <- | Minus |
| 3R | 19247790..19248027 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:35 Download gff for
BO14443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15072990..15073400 | 255..667 | 99 | <- | Minus |
| arm_3R | 15073512..15073749 | 17..254 | 100 | | Minus |
BO14443.complete Sequence
679 bp assembled on 2011-06-28
GenBank Submission: KX798546
> BO14443.complete
GAAGTTATCAGTCGACATGTCCAGTCTGCAAGATATTCCGCTTGCCGACC
CCGAGGGCCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCC
AATTCCTTGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGA
CCAAGTGGAGGATGACGACGAGACATCCTCCCAGGACAACAAGGACCTGG
GAAAGTCAAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAAT
AAGGATGTTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGA
TAAGCCGTTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCT
ACTGGAAGATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCT
TTAGGGCAGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCA
TGAACTGCAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAG
TCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCC
AACCCGAAGCCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGAT
TGTCAGTGCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATG
CGGCTTCCATTGCAAGCTTTCTAGACCAT
BO14443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5217-RA | 648 | CG5217-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5217-RA | 974 | CG5217-RA | 110..754 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19247272..19247679 | 661..254 | 2040 | 100 | Minus |
| 3R | 32079331 | 3R | 19247790..19248027 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:34 has no hits.
BO14443.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 11:52:36 Download gff for
BO14443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-RA | 119..763 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:09 Download gff for
BO14443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-RA | 119..763 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:18 Download gff for
BO14443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5217-RA | 110..754 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:18 Download gff for
BO14443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19247268..19247678 | 255..663 | 99 | <- | Minus |
| 3R | 19247790..19248027 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:09 Download gff for
BO14443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15072990..15073400 | 255..663 | 99 | <- | Minus |
| arm_3R | 15073512..15073749 | 17..254 | 100 | | Minus |
BO14443.pep Sequence
Translation from 16 to 679
> BO14443.pep
MSSLQDIPLADPEGLSVEGPEVAPAPKSNSLKRFFKISKKPMMRDQVEDD
DETSSQDNKDLGKSNTISRFFTRMKGANKDVQDPSSSVVEPVEQDKPLPN
AKPTIKTSISSYWKILFNRQKSQRQNAALGQTNANKEDNESEEVHELQPV
SQDPDTDPQPTVKDEHDEMERGTDPEPPNPKPNKSVASKASGQEIVSALE
GGQLSTNDHENAASIASFLDH
BO14443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5217-PA | 215 | CG5217-PA | 1..215 | 1..215 | 1110 | 100 | Plus |
