Clone BO14444 Report

Search the DGRC for BO14444

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptGr64e-RA
Protein status:BO14444.pep: validated full length
Sequenced Size:1387

Clone Sequence Records

BO14444.3prime Sequence

799 bp (797 high quality bases) assembled on 2006-05-29

> BO14444.3prime
ATGGTCTAGAAAGCTTGCGTTTTCGAAACAGCCGGGCACCTTTTCCTCGC
CATTGAATTGCAGCAAAATGAGTTCGTAGGTCACAATTGTGCCGGCCACC
GAAATGACAACGCCGCGTGTTAGCCGAAAGAATTTCATGCCAGTCAGAGC
CACATTGTCCATTTGGACCTCCTCCGAAAAGCGTTTTAGCTCATCGCACC
AATATTCCCGGGGAACCAATCGAAAGATTACCAGTGGTCGCTTGGACTCA
TCATTTATACTGGAGCTGTACAGGGACAGGATGAGGGTGCGACCAAGTAG
GTAGACCAGCGAGAACCAGAAGTACAGGGCATGCCATATAGACGGCTTGG
CCTGCATACTCTTTAGGATCTTTCCGCAGATGAAGTACAGATTGTTGCTG
AAGCAGAGCAATGTAATGGTGGATATGGCATCGTCCACCTCTTCGCACAG
CTTGCAAAGGTTGCGAAAGTTAATCCTGCACTGCATCCAATAGTCCACAG
TGGTGGGCAATCTAGCCTCCCTCATCATGTAGTCATTAAGCTGACGAAAG
CGAGCAGCCAAAGCTACGCTAACTGCCATCACAAAGATGTCGTTAAAGTT
CCAGGCGAAGGTGCTCAGCACATTGACCACCTTGCCCACAATGCCCAGGA
AGCGTGTGTAGTCCACGAAGTAGAAGACCGAGGAGAAGCTCAAGTACAGG
AAACTGTCTATGGGACGATCTGGCCATCGGGGACAGGAGTTGACATAGTA
GCCCATGGACAACATGCTCATAATGTGCTCCACCAGCGAGCAAGTGGTG

BO14444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32258-PA 1356 Gr64e-RA 573..1353 799..19 3905 100 Minus
CG32258-PB 1383 Gr64e-RB 600..1380 799..19 3905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RB 1468 CG32258-RB 600..1380 799..19 3905 100 Minus
Gr64e-RA 2882 CG32258-RA 2014..2794 799..19 3905 100 Minus
Gr64d-RA 2882 CG14987-RA 2014..2794 799..19 3905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4034610..4034885 783..508 1380 100 Minus
3L 28110227 3L 4035165..4035327 352..190 815 100 Minus
3L 28110227 3L 4034943..4035099 508..352 785 100 Minus
3L 28110227 3L 4035383..4035476 191..98 470 100 Minus
3L 28110227 3L 4035534..4035615 100..19 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:31:44 has no hits.

BO14444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:10 Download gff for BO14444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32258-PA 573..1356 16..799 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:03 Download gff for BO14444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32258-PB 600..1383 16..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:54:05 Download gff for BO14444.3prime
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 2014..2801 10..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:27 Download gff for BO14444.3prime
Subject Subject Range Query Range Percent Splice Strand
Gr64d-RA 2014..2801 10..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:27 Download gff for BO14444.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4034534..4034550 783..799 100 -> Minus
3L 4034611..4034885 508..782 100 -> Minus
3L 4034944..4035098 353..507 100 -> Minus
3L 4035165..4035327 190..352 100 -> Minus
3L 4035385..4035474 100..189 100 -> Minus
3L 4035535..4035622 10..99 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:54:05 Download gff for BO14444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4034534..4034550 783..799 100 -> Minus
arm_3L 4034611..4034885 508..782 100 -> Minus
arm_3L 4034944..4035098 353..507 100 -> Minus
arm_3L 4035165..4035327 190..352 100 -> Minus
arm_3L 4035385..4035474 100..189 100 -> Minus
arm_3L 4035535..4035622 10..99 95   Minus

BO14444.5prime Sequence

947 bp (739 high quality bases) assembled on 2006-05-29

> BO14444.5prime
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCGCCTGGAACTTTAACGACA
TCTTTGTGATGGCAGTTAGCGTAGCTTTGGCTGCTCGCTTTCGTCAGCTT
AATGACTACATGATGAGGGAGGCTAGATTGCCCACCACTGTGGACTATTG
GATGCAGTGCAGGATTAACTTTCGCAACCTTTTGCAGCTGTGCGAAG

BO14444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32258-PA 1356 Gr64e-RA 1..916 17..932 4580 100 Plus
CG32258-PB 1383 Gr64e-RB 114..943 103..932 4150 100 Plus
CG32258-PB 1383 Gr64e-RB 1..86 17..102 430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RA 2882 CG32258-RA 1440..2372 15..947 4620 99.8 Plus
Gr64d-RA 2882 CG14987-RA 1440..2372 15..947 4620 99.8 Plus
Gr64e-RB 1468 CG32258-RB 114..958 103..947 4180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4034163..4034550 218..605 1940 100 Plus
3L 28110227 3L 4034610..4034885 605..880 1380 100 Plus
3L 28110227 3L 4033765..4033852 15..102 440 100 Plus
3L 28110227 3L 4034033..4034107 144..218 375 100 Plus
3L 28110227 3L 4034943..4035010 880..947 295 95.6 Plus
3L 28110227 3L 4033937..4033977 103..143 205 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:59:18 has no hits.

BO14444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:11 Download gff for BO14444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32258-PA 1..931 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:04 Download gff for BO14444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32258-PA 1..931 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:49 Download gff for BO14444.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1432..2372 10..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:10 Download gff for BO14444.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr64d-RA 1432..2372 10..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:10 Download gff for BO14444.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4033759..4033852 11..102 95 -> Plus
3L 4033937..4033977 103..143 100 -> Plus
3L 4034033..4034107 144..218 100 -> Plus
3L 4034164..4034550 219..605 100 -> Plus
3L 4034611..4034885 606..880 100 -> Plus
3L 4034944..4035010 881..947 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:49 Download gff for BO14444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4033759..4033852 11..102 95 -> Plus
arm_3L 4033937..4033977 103..143 100 -> Plus
arm_3L 4034033..4034107 144..218 100 -> Plus
arm_3L 4034164..4034550 219..605 100 -> Plus
arm_3L 4034611..4034885 606..880 100 -> Plus
arm_3L 4034944..4035010 881..947 97   Plus

BO14444.complete Sequence

1387 bp assembled on 2006-10-11

GenBank Submission: FJ633128

> BO14444.complete
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCGCCTGGAACTTTAACGACA
TCTTTGTGATGGCAGTTAGCGTAGCTTTGGCTGCTCGCTTTCGTCAGCTT
AATGACTACATGATGAGGGAGGCTAGATTGCCCACCACTGTGGACTATTG
GATGCAGTGCAGGATTAACTTTCGCAACCTTTGCAAGCTGTGCGAAGAGG
TGGACGATGCCATATCCACCATTACATTGCTCTGCTTCAGCAACAATCTG
TACTTCATCTGCGGAAAGATCCTAAAGAGTATGCAGGCCAAGCCGTCTAT
ATGGCATGCCCTGTACTTCTGGTTCTCGCTGGTCTACCTACTTGGTCGCA
CCCTCATCCTGTCCCTGTACAGCTCCAGTATAAATGATGAGTCCAAGCGA
CCACTGGTAATCTTTCGATTGGTTCCCCGGGAATATTGGTGCGATGAGCT
AAAACGCTTTTCGGAGGAGGTCCAAATGGACAATGTGGCTCTGACTGGCA
TGAAATTCTTTCGGCTAACACGCGGCGTTGTCATTTCGGTGGCCGGCACA
ATTGTGACCTACGAACTCATTTTGCTGCAATTCAATGGCGAGGAAAAGGT
GCCCGGCTGTTTCGAAAACGCAAGCTTTCTAGACCAT

BO14444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RA 1356 CG32258-PA 1..1353 17..1369 6765 100 Plus
Gr64e-RB 1383 CG32258-PB 114..1380 103..1369 6335 100 Plus
Gr64e-RB 1383 CG32258-PB 1..86 17..102 430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RA 2882 CG32258-RA 1440..2794 15..1369 6775 100 Plus
Gr64d-RA 2882 CG14987-RA 1440..2794 15..1369 6775 100 Plus
Gr64e-RB 1468 CG32258-RB 114..1380 103..1369 6335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4034163..4034550 218..605 1940 100 Plus
3L 28110227 3L 4034610..4034885 605..880 1380 100 Plus
3L 28110227 3L 4035165..4035327 1036..1198 815 100 Plus
3L 28110227 3L 4034943..4035099 880..1036 785 100 Plus
3L 28110227 3L 4035383..4035476 1197..1290 470 100 Plus
3L 28110227 3L 4033765..4033852 15..102 440 100 Plus
3L 28110227 3L 4035534..4035615 1288..1369 410 100 Plus
3L 28110227 3L 4034033..4034107 144..218 375 100 Plus
3L 28110227 3L 4033937..4033977 103..143 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:30:00 has no hits.

BO14444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:31 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1..1356 17..1372 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:55 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1432..2801 10..1378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:46 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1442..2794 17..1371 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:32 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1432..2801 10..1378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:58 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64d-RA 1442..2794 17..1371 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:58 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4034944..4035098 881..1035 100 -> Plus
3L 4035165..4035327 1036..1198 100 -> Plus
3L 4035385..4035474 1199..1288 100 -> Plus
3L 4035535..4035615 1289..1371 97   Plus
3L 4034611..4034885 606..880 100 -> Plus
3L 4033767..4033852 17..102 100 -> Plus
3L 4033937..4033977 103..143 100 -> Plus
3L 4034033..4034107 144..218 100 -> Plus
3L 4034164..4034550 219..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:46 Download gff for BO14444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4033767..4033852 17..102 100 -> Plus
arm_3L 4033937..4033977 103..143 100 -> Plus
arm_3L 4034033..4034107 144..218 100 -> Plus
arm_3L 4034164..4034550 219..605 100 -> Plus
arm_3L 4034611..4034885 606..880 100 -> Plus
arm_3L 4034944..4035098 881..1035 100 -> Plus
arm_3L 4035165..4035327 1036..1198 100 -> Plus
arm_3L 4035385..4035474 1199..1288 100 -> Plus
arm_3L 4035535..4035615 1289..1371 97   Plus

BO14444.pep Sequence

Translation from 16 to 1387

> BO14444.pep
MARTTGDPAKRRRCMSRIKFWRRSRVGSEVVEKDTKRFKLSLIKAWLLRI
RQEDYKYSGSFQEAIKPVLIIAQIFALMPVRKVSSKFAEDLTFTWFSVRS
YYALVTILFFGVSSGYMVAFVTSVSFNFDSVETLVFYLSIFLISLSFFQL
ARKWPEIAQSWQLVEAKLPPLKLPKERRSLAQHINMITIVATTCSLVEHI
MSMLSMGYYVNSCPRWPDRPIDSFLYLSFSSVFYFVDYTRFLGIVGKVVN
VLSTFAWNFNDIFVMAVSVALAARFRQLNDYMMREARLPTTVDYWMQCRI
NFRNLCKLCEEVDDAISTITLLCFSNNLYFICGKILKSMQAKPSIWHALY
FWFSLVYLLGRTLILSLYSSSINDESKRPLVIFRLVPREYWCDELKRFSE
EVQMDNVALTGMKFFRLTRGVVISVAGTIVTYELILLQFNGEEKVPGCFE
NASFLDH

BO14444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-PA 451 CG32258-PA 1..451 1..451 2335 100 Plus
Gr64e-PB 460 CG32258-PB 1..460 1..451 2312 97.8 Plus
Gr64f-PA 469 CG32255-PA 63..463 47..448 910 43.8 Plus
Gr5a-PA 444 CG15779-PA 7..438 11..448 756 37 Plus
Gr64a-PA 456 CG32261-PA 59..450 61..447 535 29.9 Plus