Clone Sequence Records
BO14444.3prime Sequence
799 bp (797 high quality bases) assembled on 2006-05-29
> BO14444.3prime
ATGGTCTAGAAAGCTTGCGTTTTCGAAACAGCCGGGCACCTTTTCCTCGC
CATTGAATTGCAGCAAAATGAGTTCGTAGGTCACAATTGTGCCGGCCACC
GAAATGACAACGCCGCGTGTTAGCCGAAAGAATTTCATGCCAGTCAGAGC
CACATTGTCCATTTGGACCTCCTCCGAAAAGCGTTTTAGCTCATCGCACC
AATATTCCCGGGGAACCAATCGAAAGATTACCAGTGGTCGCTTGGACTCA
TCATTTATACTGGAGCTGTACAGGGACAGGATGAGGGTGCGACCAAGTAG
GTAGACCAGCGAGAACCAGAAGTACAGGGCATGCCATATAGACGGCTTGG
CCTGCATACTCTTTAGGATCTTTCCGCAGATGAAGTACAGATTGTTGCTG
AAGCAGAGCAATGTAATGGTGGATATGGCATCGTCCACCTCTTCGCACAG
CTTGCAAAGGTTGCGAAAGTTAATCCTGCACTGCATCCAATAGTCCACAG
TGGTGGGCAATCTAGCCTCCCTCATCATGTAGTCATTAAGCTGACGAAAG
CGAGCAGCCAAAGCTACGCTAACTGCCATCACAAAGATGTCGTTAAAGTT
CCAGGCGAAGGTGCTCAGCACATTGACCACCTTGCCCACAATGCCCAGGA
AGCGTGTGTAGTCCACGAAGTAGAAGACCGAGGAGAAGCTCAAGTACAGG
AAACTGTCTATGGGACGATCTGGCCATCGGGGACAGGAGTTGACATAGTA
GCCCATGGACAACATGCTCATAATGTGCTCCACCAGCGAGCAAGTGGTG
BO14444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32258-PA | 1356 | Gr64e-RA | 573..1353 | 799..19 | 3905 | 100 | Minus |
CG32258-PB | 1383 | Gr64e-RB | 600..1380 | 799..19 | 3905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RB | 1468 | CG32258-RB | 600..1380 | 799..19 | 3905 | 100 | Minus |
Gr64e-RA | 2882 | CG32258-RA | 2014..2794 | 799..19 | 3905 | 100 | Minus |
Gr64d-RA | 2882 | CG14987-RA | 2014..2794 | 799..19 | 3905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4034610..4034885 | 783..508 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 4035165..4035327 | 352..190 | 815 | 100 | Minus |
3L | 28110227 | 3L | 4034943..4035099 | 508..352 | 785 | 100 | Minus |
3L | 28110227 | 3L | 4035383..4035476 | 191..98 | 470 | 100 | Minus |
3L | 28110227 | 3L | 4035534..4035615 | 100..19 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:31:44 has no hits.
BO14444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:10 Download gff for
BO14444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32258-PA | 573..1356 | 16..799 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:03 Download gff for
BO14444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32258-PB | 600..1383 | 16..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:54:05 Download gff for
BO14444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 2014..2801 | 10..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:27 Download gff for
BO14444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64d-RA | 2014..2801 | 10..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:27 Download gff for
BO14444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4034534..4034550 | 783..799 | 100 | -> | Minus |
3L | 4034611..4034885 | 508..782 | 100 | -> | Minus |
3L | 4034944..4035098 | 353..507 | 100 | -> | Minus |
3L | 4035165..4035327 | 190..352 | 100 | -> | Minus |
3L | 4035385..4035474 | 100..189 | 100 | -> | Minus |
3L | 4035535..4035622 | 10..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:54:05 Download gff for
BO14444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4034534..4034550 | 783..799 | 100 | -> | Minus |
arm_3L | 4034611..4034885 | 508..782 | 100 | -> | Minus |
arm_3L | 4034944..4035098 | 353..507 | 100 | -> | Minus |
arm_3L | 4035165..4035327 | 190..352 | 100 | -> | Minus |
arm_3L | 4035385..4035474 | 100..189 | 100 | -> | Minus |
arm_3L | 4035535..4035622 | 10..99 | 95 | | Minus |
BO14444.5prime Sequence
947 bp (739 high quality bases) assembled on 2006-05-29
> BO14444.5prime
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCGCCTGGAACTTTAACGACA
TCTTTGTGATGGCAGTTAGCGTAGCTTTGGCTGCTCGCTTTCGTCAGCTT
AATGACTACATGATGAGGGAGGCTAGATTGCCCACCACTGTGGACTATTG
GATGCAGTGCAGGATTAACTTTCGCAACCTTTTGCAGCTGTGCGAAG
BO14444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32258-PA | 1356 | Gr64e-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
CG32258-PB | 1383 | Gr64e-RB | 114..943 | 103..932 | 4150 | 100 | Plus |
CG32258-PB | 1383 | Gr64e-RB | 1..86 | 17..102 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RA | 2882 | CG32258-RA | 1440..2372 | 15..947 | 4620 | 99.8 | Plus |
Gr64d-RA | 2882 | CG14987-RA | 1440..2372 | 15..947 | 4620 | 99.8 | Plus |
Gr64e-RB | 1468 | CG32258-RB | 114..958 | 103..947 | 4180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4034163..4034550 | 218..605 | 1940 | 100 | Plus |
3L | 28110227 | 3L | 4034610..4034885 | 605..880 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 4033765..4033852 | 15..102 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4034033..4034107 | 144..218 | 375 | 100 | Plus |
3L | 28110227 | 3L | 4034943..4035010 | 880..947 | 295 | 95.6 | Plus |
3L | 28110227 | 3L | 4033937..4033977 | 103..143 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:59:18 has no hits.
BO14444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:11 Download gff for
BO14444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32258-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:04 Download gff for
BO14444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32258-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:49 Download gff for
BO14444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1432..2372 | 10..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:10 Download gff for
BO14444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64d-RA | 1432..2372 | 10..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:10 Download gff for
BO14444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4033759..4033852 | 11..102 | 95 | -> | Plus |
3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
3L | 4034611..4034885 | 606..880 | 100 | -> | Plus |
3L | 4034944..4035010 | 881..947 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:49 Download gff for
BO14444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4033759..4033852 | 11..102 | 95 | -> | Plus |
arm_3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
arm_3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
arm_3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
arm_3L | 4034611..4034885 | 606..880 | 100 | -> | Plus |
arm_3L | 4034944..4035010 | 881..947 | 97 | | Plus |
BO14444.complete Sequence
1387 bp assembled on 2006-10-11
GenBank Submission: FJ633128
> BO14444.complete
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCGCCTGGAACTTTAACGACA
TCTTTGTGATGGCAGTTAGCGTAGCTTTGGCTGCTCGCTTTCGTCAGCTT
AATGACTACATGATGAGGGAGGCTAGATTGCCCACCACTGTGGACTATTG
GATGCAGTGCAGGATTAACTTTCGCAACCTTTGCAAGCTGTGCGAAGAGG
TGGACGATGCCATATCCACCATTACATTGCTCTGCTTCAGCAACAATCTG
TACTTCATCTGCGGAAAGATCCTAAAGAGTATGCAGGCCAAGCCGTCTAT
ATGGCATGCCCTGTACTTCTGGTTCTCGCTGGTCTACCTACTTGGTCGCA
CCCTCATCCTGTCCCTGTACAGCTCCAGTATAAATGATGAGTCCAAGCGA
CCACTGGTAATCTTTCGATTGGTTCCCCGGGAATATTGGTGCGATGAGCT
AAAACGCTTTTCGGAGGAGGTCCAAATGGACAATGTGGCTCTGACTGGCA
TGAAATTCTTTCGGCTAACACGCGGCGTTGTCATTTCGGTGGCCGGCACA
ATTGTGACCTACGAACTCATTTTGCTGCAATTCAATGGCGAGGAAAAGGT
GCCCGGCTGTTTCGAAAACGCAAGCTTTCTAGACCAT
BO14444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RA | 1356 | CG32258-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
Gr64e-RB | 1383 | CG32258-PB | 114..1380 | 103..1369 | 6335 | 100 | Plus |
Gr64e-RB | 1383 | CG32258-PB | 1..86 | 17..102 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RA | 2882 | CG32258-RA | 1440..2794 | 15..1369 | 6775 | 100 | Plus |
Gr64d-RA | 2882 | CG14987-RA | 1440..2794 | 15..1369 | 6775 | 100 | Plus |
Gr64e-RB | 1468 | CG32258-RB | 114..1380 | 103..1369 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4034163..4034550 | 218..605 | 1940 | 100 | Plus |
3L | 28110227 | 3L | 4034610..4034885 | 605..880 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 4035165..4035327 | 1036..1198 | 815 | 100 | Plus |
3L | 28110227 | 3L | 4034943..4035099 | 880..1036 | 785 | 100 | Plus |
3L | 28110227 | 3L | 4035383..4035476 | 1197..1290 | 470 | 100 | Plus |
3L | 28110227 | 3L | 4033765..4033852 | 15..102 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4035534..4035615 | 1288..1369 | 410 | 100 | Plus |
3L | 28110227 | 3L | 4034033..4034107 | 144..218 | 375 | 100 | Plus |
3L | 28110227 | 3L | 4033937..4033977 | 103..143 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:00 has no hits.
BO14444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:31 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1..1356 | 17..1372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:55 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1432..2801 | 10..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:46 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1442..2794 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:32 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1432..2801 | 10..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:58 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64d-RA | 1442..2794 | 17..1371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:58 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4034944..4035098 | 881..1035 | 100 | -> | Plus |
3L | 4035165..4035327 | 1036..1198 | 100 | -> | Plus |
3L | 4035385..4035474 | 1199..1288 | 100 | -> | Plus |
3L | 4035535..4035615 | 1289..1371 | 97 | | Plus |
3L | 4034611..4034885 | 606..880 | 100 | -> | Plus |
3L | 4033767..4033852 | 17..102 | 100 | -> | Plus |
3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:46 Download gff for
BO14444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4033767..4033852 | 17..102 | 100 | -> | Plus |
arm_3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
arm_3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
arm_3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
arm_3L | 4034611..4034885 | 606..880 | 100 | -> | Plus |
arm_3L | 4034944..4035098 | 881..1035 | 100 | -> | Plus |
arm_3L | 4035165..4035327 | 1036..1198 | 100 | -> | Plus |
arm_3L | 4035385..4035474 | 1199..1288 | 100 | -> | Plus |
arm_3L | 4035535..4035615 | 1289..1371 | 97 | | Plus |
BO14444.pep Sequence
Translation from 16 to 1387
> BO14444.pep
MARTTGDPAKRRRCMSRIKFWRRSRVGSEVVEKDTKRFKLSLIKAWLLRI
RQEDYKYSGSFQEAIKPVLIIAQIFALMPVRKVSSKFAEDLTFTWFSVRS
YYALVTILFFGVSSGYMVAFVTSVSFNFDSVETLVFYLSIFLISLSFFQL
ARKWPEIAQSWQLVEAKLPPLKLPKERRSLAQHINMITIVATTCSLVEHI
MSMLSMGYYVNSCPRWPDRPIDSFLYLSFSSVFYFVDYTRFLGIVGKVVN
VLSTFAWNFNDIFVMAVSVALAARFRQLNDYMMREARLPTTVDYWMQCRI
NFRNLCKLCEEVDDAISTITLLCFSNNLYFICGKILKSMQAKPSIWHALY
FWFSLVYLLGRTLILSLYSSSINDESKRPLVIFRLVPREYWCDELKRFSE
EVQMDNVALTGMKFFRLTRGVVISVAGTIVTYELILLQFNGEEKVPGCFE
NASFLDH
BO14444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-PA | 451 | CG32258-PA | 1..451 | 1..451 | 2335 | 100 | Plus |
Gr64e-PB | 460 | CG32258-PB | 1..460 | 1..451 | 2312 | 97.8 | Plus |
Gr64f-PA | 469 | CG32255-PA | 63..463 | 47..448 | 910 | 43.8 | Plus |
Gr5a-PA | 444 | CG15779-PA | 7..438 | 11..448 | 756 | 37 | Plus |
Gr64a-PA | 456 | CG32261-PA | 59..450 | 61..447 | 535 | 29.9 | Plus |